GO241576

Overview
NameGO241576
Unique NameGO241576
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
Cara cara navel orange fruit cDNA librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13740 contig Csv1_Contig13740:1..618. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of GO241576 vs. ExPASy Swiss-Prot
Match: TRXF_PEA (Thioredoxin F-type, chloroplastic OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 6.928e-50
Identity = 71/88 (80.68%), Postives = 80/88 (90.91%), Query Frame = 3
Query:  249 TVRSSLEIAG--ATVGEVTEVNKDTFWPIVKAAGDKTVVLDMYTQWCGPCKVIAPKFQELAQKYSDVIFLKLDCNQENKSLAKELGNK 506
            +VRSSLE AG   TVG+VTEVNKDTFWPIV AAGDKTVVLDM+T+WCGPCKVIAP ++EL+QKY DV+FLKLDCNQ+NKSLAKELG K
Sbjct:   60 SVRSSLETAGPTVTVGKVTEVNKDTFWPIVNAAGDKTVVLDMFTKWCGPCKVIAPLYEELSQKYLDVVFLKLDCNQDNKSLAKELGIK 147          

HSP 2 Score: 69.3218 bits (168), Expect = 6.928e-50
Identity = 34/41 (82.93%), Postives = 37/41 (90.24%), Query Frame = 1
Query:  490 KSLGIRVVPTFKILKDNKVVKEVTGAKLEDLVFAIDAVRSS 612
            K LGI+VVPTFKILKDNK+VKEVTGAK +DLV AID VRSS
Sbjct:  142 KELGIKVVPTFKILKDNKIVKEVTGAKFDDLVAAIDTVRSS 182          
BLAST of GO241576 vs. ExPASy Swiss-Prot
Match: TRXF2_ARATH (Thioredoxin F-type 2, chloroplastic OS=Arabidopsis thaliana GN=At5g16400 PE=2 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 5.771e-49
Identity = 67/87 (77.01%), Postives = 76/87 (87.36%), Query Frame = 3
Query:  240 GVFTVRSSLEIAGATVGEVTEVNKDTFWPIVKAAGDKTVVLDMYTQWCGPCKVIAPKFQELAQKYSDVIFLKLDCNQENKSLAKELG 500
            G   VR SLE    TVG+VTEV+KDTFWPIVKAAGDK VVLDMYTQWCGPCKVIAPK++EL++KY D++FLKLDCNQ+NK LAKELG
Sbjct:   62 GSCVVRCSLETVNVTVGQVTEVDKDTFWPIVKAAGDKIVVLDMYTQWCGPCKVIAPKYKELSEKYQDMVFLKLDCNQDNKPLAKELG 148          

HSP 2 Score: 67.3958 bits (163), Expect = 5.771e-49
Identity = 34/40 (85.00%), Postives = 36/40 (90.00%), Query Frame = 1
Query:  490 KSLGIRVVPTFKILKDNKVVKEVTGAKLEDLVFAIDAVRS 609
            K LGIRVVPTFKILKDNKVVKEVTGAK EDL+ AI+A RS
Sbjct:  145 KELGIRVVPTFKILKDNKVVKEVTGAKYEDLLAAIEAARS 184          
BLAST of GO241576 vs. ExPASy Swiss-Prot
Match: TRXF1_ARATH (Thioredoxin F-type 1, chloroplastic OS=Arabidopsis thaliana GN=At3g02730 PE=1 SV=2)

HSP 1 Score: 138.658 bits (348), Expect = 3.334e-46
Identity = 63/88 (71.59%), Postives = 74/88 (84.09%), Query Frame = 3
Query:  237 GGVFTVRSSLEIAGATVGEVTEVNKDTFWPIVKAAGDKTVVLDMYTQWCGPCKVIAPKFQELAQKYSDVIFLKLDCNQENKSLAKELG 500
            G    VR SLE    +VG+VTEV+KDTFWPIVKAAG+K VVLDMYTQWCGPCKVIAPK++ L++KY DV+FLKLDCN +N+ LAKELG
Sbjct:   51 GDSSVVRCSLETVNVSVGQVTEVDKDTFWPIVKAAGEKLVVLDMYTQWCGPCKVIAPKYKALSEKYDDVVFLKLDCNPDNRPLAKELG 138          

HSP 2 Score: 66.2402 bits (160), Expect = 3.334e-46
Identity = 33/41 (80.49%), Postives = 36/41 (87.80%), Query Frame = 1
Query:  490 KSLGIRVVPTFKILKDNKVVKEVTGAKLEDLVFAIDAVRSS 612
            K LGIRVVPTFKILKDNKVVKEVTGAK +DLV AI+  RS+
Sbjct:  135 KELGIRVVPTFKILKDNKVVKEVTGAKYDDLVAAIETARSA 175          
BLAST of GO241576 vs. ExPASy Swiss-Prot
Match: TRXF_BRANA (Thioredoxin F-type, chloroplastic OS=Brassica napus GN=TRXF PE=2 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 9.617e-46
Identity = 63/88 (71.59%), Postives = 74/88 (84.09%), Query Frame = 3
Query:  237 GGVFTVRSSLEIAGATVGEVTEVNKDTFWPIVKAAGDKTVVLDMYTQWCGPCKVIAPKFQELAQKYSDVIFLKLDCNQENKSLAKELG 500
            G    VR SL+    +VG+VTEV+KDTFWPIVKAAG+K VVLDMYTQWCGPCKVIAPK++ L++KY DV+FLKLDCN EN+ LAKELG
Sbjct:   54 GDSSVVRCSLQTVNVSVGQVTEVDKDTFWPIVKAAGEKIVVLDMYTQWCGPCKVIAPKYKALSEKYEDVVFLKLDCNPENRPLAKELG 141          

HSP 2 Score: 64.6994 bits (156), Expect = 9.617e-46
Identity = 32/41 (78.05%), Postives = 36/41 (87.80%), Query Frame = 1
Query:  490 KSLGIRVVPTFKILKDNKVVKEVTGAKLEDLVFAIDAVRSS 612
            K LGIRVVPTFKILKDN+VVKEVTGAK +DLV AI+  RS+
Sbjct:  138 KELGIRVVPTFKILKDNQVVKEVTGAKYDDLVAAIETARSA 178          
BLAST of GO241576 vs. ExPASy Swiss-Prot
Match: TRXF_SPIOL (Thioredoxin F-type, chloroplastic OS=Spinacia oleracea PE=1 SV=2)

HSP 1 Score: 140.969 bits (354), Expect = 2.306e-44
Identity = 69/102 (67.65%), Postives = 84/102 (82.35%), Query Frame = 3
Query:  213 KKSNKQLNGGVFTVRSSLEIAGAT------VGEVTEVNKDTFWPIVKAAGDKTVVLDMYTQWCGPCKVIAPKFQELAQKYSDVIFLKLDCNQENKSLAKELG 500
            +K  +++ GG   VR+S+E A  T      VG+VTEVNKDTFWPIVKAAGDK VVLDM+TQWCGPCK +APK+++LA++Y DVIFLKLDCNQENK+LAKELG
Sbjct:   54 RKDRRRMRGG--EVRASMEQALGTQEMEAIVGKVTEVNKDTFWPIVKAAGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYLDVIFLKLDCNQENKTLAKELG 153          

HSP 2 Score: 57.7658 bits (138), Expect = 2.306e-44
Identity = 30/41 (73.17%), Postives = 33/41 (80.49%), Query Frame = 1
Query:  490 KSLGIRVVPTFKILKDNKVVKEVTGAKLEDLVFAIDAVRSS 612
            K LGIRVVPTFKILK+N VV EVTGAK + L+ AI A RSS
Sbjct:  150 KELGIRVVPTFKILKENSVVGEVTGAKYDKLLEAIQAARSS 190          
BLAST of GO241576 vs. ExPASy Swiss-Prot
Match: TRXF_MESCR (Thioredoxin F-type, chloroplastic OS=Mesembryanthemum crystallinum PE=2 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 1.224e-42
Identity = 67/96 (69.79%), Postives = 78/96 (81.25%), Query Frame = 3
Query:  228 QLNGGVFTVRSSLEIA-GAT----VGEVTEVNKDTFWPIVKAAGDKTVVLDMYTQWCGPCKVIAPKFQELAQKYSDVIFLKLDCNQENKSLAKELG 500
            +++G    V++SLE A GA     VG+VTEV+KDTFWPI   AGDK VVLDMYTQWCGPCKV+APK+QELA+K  DV+FLKLDCNQENK LAKELG
Sbjct:   59 RMSGRSCCVKASLETAVGAESETLVGKVTEVDKDTFWPIANGAGDKPVVLDMYTQWCGPCKVMAPKYQELAEKLLDVVFLKLDCNQENKPLAKELG 154          

HSP 2 Score: 58.9214 bits (141), Expect = 1.224e-42
Identity = 30/41 (73.17%), Postives = 33/41 (80.49%), Query Frame = 1
Query:  490 KSLGIRVVPTFKILKDNKVVKEVTGAKLEDLVFAIDAVRSS 612
            K LGIRVVPTFKILK  K+V EVTGAK + LV AI+A RSS
Sbjct:  151 KELGIRVVPTFKILKGGKIVDEVTGAKFDKLVAAIEAARSS 191          
The following BLAST results are available for this feature:
BLAST of GO241576 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
TRXF_PEA6.928e-5080.68Thioredoxin F-type, chloroplastic OS=Pisum sativum... [more]
TRXF2_ARATH5.771e-4977.01Thioredoxin F-type 2, chloroplastic OS=Arabidopsis... [more]
TRXF1_ARATH3.334e-4671.59Thioredoxin F-type 1, chloroplastic OS=Arabidopsis... [more]
TRXF_BRANA9.617e-4671.59Thioredoxin F-type, chloroplastic OS=Brassica napu... [more]
TRXF_SPIOL2.306e-4467.65Thioredoxin F-type, chloroplastic OS=Spinacia oler... [more]
TRXF_MESCR1.224e-4269.79Thioredoxin F-type, chloroplastic OS=Mesembryanthe... [more]
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Properties
Property NameValue
Genbank description224 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 340 5, mRNA sequence.