GO241573

Overview
NameGO241573
Unique NameGO241573
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
Cara cara navel orange fruit cDNA librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
GO241573_ssr8 microsatellite GO241573_ssr8:8..22. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2579 contig Csv1_Contig2579:409..810. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of GO241573 vs. ExPASy Swiss-Prot
Match: MT3_CARPA (Metallothionein-like protein type 3 OS=Carica papaya PE=3 SV=1)

HSP 1 Score: 63.1586 bits (152), Expect = 1.090e-19
Identity = 25/31 (80.65%), Postives = 29/31 (93.55%), Query Frame = 2
Query:   86 MSDTCGNCDCADRSQCVKKGSSYAADFVETD 178
            MSDTCGNCDCAD++QCVKKGSSY AD +ET+
Sbjct:    1 MSDTCGNCDCADKTQCVKKGSSYTADIIETE 31          

HSP 2 Score: 53.9138 bits (128), Expect = 1.090e-19
Identity = 20/28 (71.43%), Postives = 23/28 (82.14%), Query Frame = 1
Query:  208 VVMDVQAAEAEGNCKCGPTCACVNCTCG 291
            VVMD  AAE +G CKCGP+C+C NCTCG
Sbjct:   37 VVMDAPAAENDGKCKCGPSCSCTNCTCG 64          
BLAST of GO241573 vs. ExPASy Swiss-Prot
Match: MT3_ACTDE (Metallothionein-like protein type 3 OS=Actinidia deliciosa GN=pKIWI503 PE=2 SV=1)

HSP 1 Score: 53.5286 bits (127), Expect = 5.196e-15
Identity = 25/34 (73.53%), Postives = 26/34 (76.47%), Query Frame = 2
Query:   86 MSDTCGNCDCADRSQCVKKGSSYAADFVETDLRY 187
            MSD CGNCDCAD SQCVKKG+S   D VETD  Y
Sbjct:    1 MSDKCGNCDCADSSQCVKKGNS--IDIVETDKSY 32          

HSP 2 Score: 47.7506 bits (112), Expect = 5.196e-15
Identity = 19/27 (70.37%), Postives = 21/27 (77.78%), Query Frame = 1
Query:  208 VVMDVQAAEAEGNCKCGPTCACVNCTC 288
            VVM V AAE+ G CKCG +C CVNCTC
Sbjct:   36 VVMGVPAAESGGKCKCGTSCPCVNCTC 62          
BLAST of GO241573 vs. ExPASy Swiss-Prot
Match: MT3_MUSAC (Metallothionein-like protein type 3 OS=Musa acuminata PE=3 SV=1)

HSP 1 Score: 55.8398 bits (133), Expect = 8.781e-15
Identity = 22/31 (70.97%), Postives = 25/31 (80.65%), Query Frame = 2
Query:   95 TCGNCDCADRSQCVKKGSSYAADFVETDLRY 187
            TCGNCDC D+SQCVKKG+SY  D VET+  Y
Sbjct:    3 TCGNCDCVDKSQCVKKGNSYGIDIVETEKSY 33          

HSP 2 Score: 44.669 bits (104), Expect = 8.781e-15
Identity = 18/35 (51.43%), Postives = 24/35 (68.57%), Query Frame = 1
Query:  190 SFVSTVVVMDVQAAEAEGNCKCGPTCACVNCTCGS 294
            S+V  V+V   +AAE +G CKCG  CAC +C CG+
Sbjct:   32 SYVDEVIVA-AEAAEHDGKCKCGAACACTDCKCGN 65          
BLAST of GO241573 vs. ExPASy Swiss-Prot
Match: MT3_PRUAV (Metallothionein-like protein 1 OS=Prunus avium GN=MT1 PE=3 SV=1)

HSP 1 Score: 50.447 bits (119), Expect = 3.446e-13
Identity = 19/27 (70.37%), Postives = 22/27 (81.48%), Query Frame = 1
Query:  208 VVMDVQAAEAEGNCKCGPTCACVNCTC 288
            V+MD  AAE  GNCKCGP+CACV+C C
Sbjct:   38 VIMDAPAAENGGNCKCGPSCACVDCKC 64          

HSP 2 Score: 44.669 bits (104), Expect = 3.446e-13
Identity = 19/33 (57.58%), Postives = 22/33 (66.67%), Query Frame = 2
Query:   86 MSDTCGNCDCADRSQCVKKGSSYAADFVETDLR 184
            MS  C NCDC+D SQC KKG S+    VET+ R
Sbjct:    1 MSSKCSNCDCSDSSQCTKKGYSFDLVIVETENR 33          
BLAST of GO241573 vs. ExPASy Swiss-Prot
Match: MT3A_ORYSJ (Metallothionein-like protein 3A OS=Oryza sativa subsp. japonica GN=MT3A PE=2 SV=1)

HSP 1 Score: 54.299 bits (129), Expect = 7.561e-13
Identity = 22/31 (70.97%), Postives = 25/31 (80.65%), Query Frame = 2
Query:   86 MSDTCGNCDCADRSQCVKKGSSYAADFVETD 178
            MSD CGNCDCAD+SQCVKKG+SY    VE +
Sbjct:    1 MSDKCGNCDCADKSQCVKKGTSYGVVIVEAE 31          

HSP 2 Score: 39.6614 bits (91), Expect = 7.561e-13
Identity = 13/25 (52.00%), Postives = 17/25 (68.00%), Query Frame = 1
Query:  217 DVQAAEAEGNCKCGPTCACVNCTCG 291
            +V A E  G CKCG +C+C +C CG
Sbjct:   37 EVAAGEENGGCKCGTSCSCTDCKCG 61          
BLAST of GO241573 vs. ExPASy Swiss-Prot
Match: MT3A_ORYSI (Metallothionein-like protein 3A OS=Oryza sativa subsp. indica GN=MT3A PE=3 SV=1)

HSP 1 Score: 54.299 bits (129), Expect = 7.561e-13
Identity = 22/31 (70.97%), Postives = 25/31 (80.65%), Query Frame = 2
Query:   86 MSDTCGNCDCADRSQCVKKGSSYAADFVETD 178
            MSD CGNCDCAD+SQCVKKG+SY    VE +
Sbjct:    1 MSDKCGNCDCADKSQCVKKGTSYGVVIVEAE 31          

HSP 2 Score: 39.6614 bits (91), Expect = 7.561e-13
Identity = 13/25 (52.00%), Postives = 17/25 (68.00%), Query Frame = 1
Query:  217 DVQAAEAEGNCKCGPTCACVNCTCG 291
            +V A E  G CKCG +C+C +C CG
Sbjct:   37 EVAAGEENGGCKCGTSCSCTDCKCG 61          
BLAST of GO241573 vs. ExPASy Swiss-Prot
Match: MT3_MALDO (Metallothionein-like protein type 3 OS=Malus domestica GN=MT2 PE=3 SV=1)

HSP 1 Score: 48.1358 bits (113), Expect = 7.561e-13
Identity = 21/33 (63.64%), Postives = 24/33 (72.73%), Query Frame = 2
Query:   86 MSDTCGNCDCADRSQCVKKGSSYAADFVETDLR 184
            MS  C NCDCAD +QCVKKG+SY    VET+ R
Sbjct:    1 MSGKCDNCDCADSTQCVKKGNSYDLVIVETENR 33          

HSP 2 Score: 45.8246 bits (107), Expect = 7.561e-13
Identity = 17/28 (60.71%), Postives = 21/28 (75.00%), Query Frame = 1
Query:  208 VVMDVQAAEAEGNCKCGPTCACVNCTCG 291
            V +D  AAE +G CKCG  C+CV+CTCG
Sbjct:   38 VFVDAPAAEHDGKCKCGTGCSCVSCTCG 65          
The following BLAST results are available for this feature:
BLAST of GO241573 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
MT3_CARPA1.090e-1980.65Metallothionein-like protein type 3 OS=Carica papa... [more]
MT3_ACTDE5.196e-1573.53Metallothionein-like protein type 3 OS=Actinidia d... [more]
MT3_MUSAC8.781e-1570.97Metallothionein-like protein type 3 OS=Musa acumin... [more]
MT3_PRUAV3.446e-1370.37Metallothionein-like protein 1 OS=Prunus avium GN=... [more]
MT3A_ORYSJ7.561e-1370.97Metallothionein-like protein 3A OS=Oryza sativa su... [more]
MT3A_ORYSI7.561e-1370.97Metallothionein-like protein 3A OS=Oryza sativa su... [more]
MT3_MALDO7.561e-1363.64Metallothionein-like protein type 3 OS=Malus domes... [more]
back to top
Properties
Property NameValue
Genbank description221 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 337 5, mRNA sequence.