GO241557

Overview
NameGO241557
Unique NameGO241557
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
Cara cara navel orange fruit cDNA librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8643 contig Csv1_Contig8643:112..691. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of GO241557 vs. ExPASy Swiss-Prot
Match: NIFU2_ARATH (NifU-like protein 2, chloroplastic OS=Arabidopsis thaliana GN=NIFU2 PE=1 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 1.962e-35
Identity = 91/166 (54.82%), Postives = 107/166 (64.46%), Query Frame = 3
Query:   81 MQGVVLNPT-YSR-PHQTLDSPSCSRPASKSTKSFFGERVS--LTRWRNPVRHSSCRLLLIRKRGAARRNVIKAVATPDSAIELPLTAENIESVLDEIRPYLISDGGNVALHEIDGNVVRLKLQGACGSCPSSVMTMKMGIERRFNGRRSPR*LQWNRXADEETGL 566
            MQ + LNP   SR P Q +D  S S       +    +R    + R  NP+R    R L  R+    R  V+KAVATPD  +E+PLT EN+ESVLDEIRPYL+SDGGNVALHEIDGN+VR+KLQGACGSCPSS MTMKMGIERR    + P  +      DEETGL
Sbjct:    1 MQLLTLNPAAISRTPPQAIDPSSSSSLLLPFPQILSSQRALGLVARPCNPLRRGLSRFLSSRQL-FRRSKVVKAVATPDPILEVPLTEENVESVLDEIRPYLMSDGGNVALHEIDGNIVRVKLQGACGSCPSSTMTMKMGIERRLM-EKIPEIVAVEALPDEETGL 164          
BLAST of GO241557 vs. ExPASy Swiss-Prot
Match: NIFU1_ORYSJ (NifU-like protein 1, chloroplastic OS=Oryza sativa subsp. japonica GN=NIFU1 PE=1 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 3.140e-25
Identity = 73/154 (47.40%), Postives = 94/154 (61.04%), Query Frame = 3
Query:  123 QTLDSPSCSRPA---SKSTKSFFGERVSLTRWRNPVRHSSCRLLLIRKRGAARRN-VIKAVA--TPDSAIELPLTAENIESVLDEIRPYLISDGGNVALHEIDGNVVRLKLQGACGSCPSSVMTMKMGIERRFNGRRSPR*LQWNRXADEETGL 566
            QT   P  +  A   S +T S    +V+   W +    SS    L+      R   V+ A+A   P +A++LPLTA N+ESVLD++RPYL +DGG+VALHEI GNVVRLKLQGACGSCPSS++T+K GIERR    + P         D+ETGL
Sbjct:    2 QTTTVPMAAAAAVAPSTTTSSSASFKVAAYAWSSCRSSSSPATRLVAAPNHQRPPLVVGAIAGLDPVTAVQLPLTAGNVESVLDQVRPYLTADGGDVALHEIAGNVVRLKLQGACGSCPSSLITIKRGIERRLM-EKIPDVAAVEPVTDKETGL 154          
BLAST of GO241557 vs. ExPASy Swiss-Prot
Match: NIFU3_ARATH (NifU-like protein 3, chloroplastic OS=Arabidopsis thaliana GN=NIFU3 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 9.454e-22
Identity = 52/82 (63.41%), Postives = 62/82 (75.61%), Query Frame = 3
Query:  318 LPLTAENIESVLDEIRPYLISDGGNVALHEIDGNVVRLKLQGACGSCPSSVMTMKMGIERRFNGRRSPR*LQWNRXADEETG 563
            +PLT EN+E VLDE+RP L++DGGNVALHEIDG VV LKLQGACGSCPSS MT+KMGIE R    + P  +   +  + ETG
Sbjct:   82 MPLTEENVERVLDEVRPSLMADGGNVALHEIDGLVVVLKLQGACGSCPSSSMTLKMGIESRLRD-KIPEIMSVEQFLESETG 162          
BLAST of GO241557 vs. ExPASy Swiss-Prot
Match: NIFU1_ARATH (NifU-like protein 1, chloroplastic OS=Arabidopsis thaliana GN=NIFU1 PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.909e-14
Identity = 38/64 (59.38%), Postives = 48/64 (75.00%), Query Frame = 3
Query:  306 SAIELPLTAENIESVLDEIRPYLISDGGNVALHEIDGNVVRLKLQGACGSCPSSVMTMKMGIER 497
            SA    LT +N++ VL+++RP+LISDGGNV +  ++  VV LKLQGAC SCPSS  TM MGIER
Sbjct:   79 SAQTFDLTPQNVDLVLEDVRPFLISDGGNVDVVSVEDGVVSLKLQGACTSCPSSSTTMTMGIER 142          
BLAST of GO241557 vs. ExPASy Swiss-Prot
Match: NIFU_ANASL (Nitrogen fixation protein nifU (Fragment) OS=Anabaena sp. (strain L31) GN=nifU PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.238e-13
Identity = 35/62 (56.45%), Postives = 49/62 (79.03%), Query Frame = 3
Query:  339 IESVLDE-IRPYLISDGGNVALHEIDGNVVRLKLQGACGSCPSSVMTMKMGIERRFNGRRSP 521
            I+ VLDE +RP LI+DGG+V L+++DG++V++ LQGACGSCPSS  T+K+ IE R   R +P
Sbjct:   44 IQKVLDEEVRPVLIADGGDVELYDVDGDIVKVVLQGACGSCPSSTATLKIAIESRLRDRINP 105          
BLAST of GO241557 vs. ExPASy Swiss-Prot
Match: NIFU_ANASP (Nitrogen fixation protein nifU OS=Anabaena sp. (strain PCC 7120) GN=nifU PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.111e-13
Identity = 40/84 (47.62%), Postives = 56/84 (66.67%), Query Frame = 3
Query:  285 KAVATPDSAIELPLTAEN----IESVLDE-IRPYLISDGGNVALHEIDGNVVRLKLQGACGSCPSSVMTMKMGIERRFNGRRSP 521
            K    P+S  + PLT       I+ VLDE +RP LI+DGG+V L+++DG++V++ LQGACGSC SS  T+K+ IE R   R +P
Sbjct:  210 KPTNIPNSGQKRPLTNVQKIALIQKVLDEEVRPVLIADGGDVELYDVDGDIVKVVLQGACGSCSSSTATLKIAIESRLRDRINP 293          
BLAST of GO241557 vs. ExPASy Swiss-Prot
Match: NIFU_ANAAZ (Nitrogen fixation protein nifU OS=Anabaena azollae GN=nifU PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.111e-13
Identity = 40/84 (47.62%), Postives = 56/84 (66.67%), Query Frame = 3
Query:  285 KAVATPDSAIELPLTAEN----IESVLDE-IRPYLISDGGNVALHEIDGNVVRLKLQGACGSCPSSVMTMKMGIERRFNGRRSP 521
            K    P+S  + PLT       I+ VLDE +RP LI+DGG+V L+++DG++V++ LQGACGSC SS  T+K+ IE R   R +P
Sbjct:  210 KPTNIPNSGQKRPLTNVQKIALIQKVLDEEVRPVLIADGGDVELYDVDGDIVKVVLQGACGSCSSSTATLKIAIESRLRDRINP 293          
BLAST of GO241557 vs. ExPASy Swiss-Prot
Match: YUTI_BACSU (Putative nitrogen fixation protein yutI OS=Bacillus subtilis GN=yutI PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.787e-12
Identity = 30/55 (54.55%), Postives = 44/55 (80.00%), Query Frame = 3
Query:  333 ENIESVLDEIRPYLISDGGNVALHEIDGNVVRLKLQGACGSCPSSVMTMKMGIER 497
            E ++ VLD++RP+L+ DGG+  L ++D  +V+L+L GACGSCPSS +T+K GIER
Sbjct:   41 EQVQEVLDKLRPFLLRDGGDCELVDVDEGIVKLRLLGACGSCPSSTITLKAGIER 95          
The following BLAST results are available for this feature:
BLAST of GO241557 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
NIFU2_ARATH1.962e-3554.82NifU-like protein 2, chloroplastic OS=Arabidopsis ... [more]
NIFU1_ORYSJ3.140e-2547.40NifU-like protein 1, chloroplastic OS=Oryza sativa... [more]
NIFU3_ARATH9.454e-2263.41NifU-like protein 3, chloroplastic OS=Arabidopsis ... [more]
NIFU1_ARATH1.909e-1459.38NifU-like protein 1, chloroplastic OS=Arabidopsis ... [more]
NIFU_ANASL1.238e-1356.45Nitrogen fixation protein nifU (Fragment) OS=Anaba... [more]
NIFU_ANASP2.111e-1347.62Nitrogen fixation protein nifU OS=Anabaena sp. (st... [more]
NIFU_ANAAZ2.111e-1347.62Nitrogen fixation protein nifU OS=Anabaena azollae... [more]
YUTI_BACSU1.787e-1254.55Putative nitrogen fixation protein yutI OS=Bacillu... [more]
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Properties
Property NameValue
Genbank description205 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 321 5, mRNA sequence.