GO241451

Overview
NameGO241451
Unique NameGO241451
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
Cara cara navel orange fruit cDNA librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4485 contig Csv1_Contig4485:49..753. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of GO241451 vs. ExPASy Swiss-Prot
Match: TRPC_ARATH (Indole-3-glycerol phosphate synthase, chloroplastic OS=Arabidopsis thaliana GN=At2g04400 PE=2 SV=2)

HSP 1 Score: 155.221 bits (391), Expect = 3.106e-37
Identity = 83/140 (59.29%), Postives = 93/140 (66.43%), Query Frame = 3
Query:    3 RTKGXXXXXXXXXXXXXXXXRXMTKICKMLGLTALVEVHDEREMDXVXGXEGXELIGINNRNLETFEVDISNPKKLXEGEXGEIIRQKNIIVVGEXGLFTPDDIAYXXXXXXXXXXXXESIVKQDDPGKGITGLFGKDIS 422
            RTKG                  + KICK L L ALVEVHDEREM  V G EG EL+GINNR+LETFEVDISN KKL EGE G  IR++++IVVGE GLFTPDDIAY            ESIVKQ+DP KGI GLFG++IS
Sbjct:  261 RTKGADAVLLIAAVLADLEITFLLKICKKLSLAALVEVHDEREMGRVLGIEGIELVGINNRSLETFEVDISNTKKLLEGEHGRQIRERDMIVVGESGLFTPDDIAYVQAAGVKAVLVGESIVKQNDPEKGIAGLFGRNIS 400          
BLAST of GO241451 vs. ExPASy Swiss-Prot
Match: TRPC_MICAN (Indole-3-glycerol phosphate synthase OS=Microcystis aeruginosa (strain NIES-843) GN=trpC PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 6.951e-21
Identity = 57/111 (51.35%), Postives = 67/111 (60.36%), Query Frame = 3
Query:   75 KICKMLGLTALVEVHDEREMDXVXGXEGXELIGINNRNLETFEVDISNPKKLXEGEXGEIIRQKNIIVVGEXGLFTPDDIAYXXXXXXXXXXXXESIVKQDDPGKGITGLF 407
            KI K LG+TALVEVH   E D V   EG ELIGINNRNLETF VD+ N ++L E   GE +R+K I++V E GL T  D+A             ES+VK  DP  GI  LF
Sbjct:  183 KIVKGLGMTALVEVHSLAEFDRVLAIEGIELIGINNRNLETFTVDLDNTRQLLEAR-GEQVREKGILIVSESGLHTATDLAKVKQAGANAVLIGESLVKLPDPALGIQKLF 292          
BLAST of GO241451 vs. ExPASy Swiss-Prot
Match: TRPC_CYAP8 (Indole-3-glycerol phosphate synthase OS=Cyanothece sp. (strain PCC 8801) GN=trpC PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.920e-19
Identity = 55/136 (40.44%), Postives = 69/136 (50.74%), Query Frame = 3
Query:    3 RTKGXXXXXXXXXXXXXXXXRXMTKICKMLGLTALVEVHDEREMDXVXGXEGXELIGINNRNLETFEVDISNPKKLXEGEXGEIIRQKNIIVVGEXGLFTPDDIAYXXXXXXXXXXXXESIVKQDDPGKGITGLFG 410
            RTKG                    KI + LG+TAL+EVH   E+D V   EG  LIGINNRNLETFEVD+    +L      + I+   I ++ E GL TPDD+ +            ES+VKQ DP + I  LFG
Sbjct:  159 RTKGADAVLLIAAILSDRDLSYFLKIIQTLGMTALIEVHSLTELDRVLAIEGVSLIGINNRNLETFEVDLKTTSQLLAARRDK-IQALGIKIISESGLHTPDDLQFVQQAGSDGVLIGESLVKQPDPTQAIANLFG 293          
BLAST of GO241451 vs. ExPASy Swiss-Prot
Match: TRPC_CYAA5 (Indole-3-glycerol phosphate synthase OS=Cyanothece sp. (strain ATCC 51142) GN=trpC PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 7.953e-17
Identity = 48/113 (42.48%), Postives = 61/113 (53.98%), Query Frame = 3
Query:   69 MTKICKMLGLTALVEVHDEREMDXVXGXEGXELIGINNRNLETFEVDISNPKKLXEGEXGEIIRQKNIIVVGEXGLFTPDDIAYXXXXXXXXXXXXESIVKQDDPGKGITGLF 407
            + KI   LG+T LVEVH   E+D V   EG  L+GINNRNLETFEV +     L      E I+++ I +V E G+ TP  +              ES+VKQDDP + I  LF
Sbjct:  181 LIKIIHGLGMTPLVEVHSLAELDRVLAIEGVSLVGINNRNLETFEVSLETTTNLITARQDE-IKERGIYIVSESGIHTPQHLQQVTEAGANAVLIGESLVKQDDPTQAIANLF 292          
BLAST of GO241451 vs. ExPASy Swiss-Prot
Match: TRPC_TRIEI (Indole-3-glycerol phosphate synthase OS=Trichodesmium erythraeum (strain IMS101) GN=trpC PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.039e-16
Identity = 49/116 (42.24%), Postives = 68/116 (58.62%), Query Frame = 3
Query:   75 KICKMLGLTALVEVHDEREMDXVXGXEGXELIGINNRNLETFEVDISNPKKLXEGEXGEIIRQKNIIVVGEXGLFTPDDIAYXXXXXXXXXXXXESIVKQDDPGKGITGLFGKDIS 422
            KI   LG+TALVEVH  +E+D V G EG +LIGINNRNLE F VD+    +L E    E + +  I+VV E G+ + +DI +            ES+VK+ +PG  +  LF ++ S
Sbjct:  183 KIVNSLGMTALVEVHTLKELDRVLGIEGVKLIGINNRNLEDFSVDLQTTFQLMEARKKE-LEKLGILVVSESGIHSYEDINFMINAGVNAVLVGESLVKKTNPGTALLQLFNENKS 297          
BLAST of GO241451 vs. ExPASy Swiss-Prot
Match: TRPC_SYNY3 (Indole-3-glycerol phosphate synthase OS=Synechocystis sp. (strain PCC 6803) GN=trpC PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.364e-15
Identity = 46/117 (39.32%), Postives = 65/117 (55.56%), Query Frame = 3
Query:   63 RXMTKICKMLGLTALVEVHDEREMDXVXGXEGXELIGINNRNLETFEVDISNPKKLXEGEXGEIIRQKNIIVVGEXGLFTPDDIAYXXXXXXXXXXXXESIVKQDDPGKGITGLFGK 413
            R   KI + LG+ ALVEVH   EMD V   +G +LIG+NNRNL+TF VD+   + L   +  E + Q +I +V E G++   D+              ES+VKQ DP + I  L+G+
Sbjct:  179 RYFLKIIEGLGMAALVEVHTLEEMDRVLALDGVQLIGVNNRNLQTFTVDLQTTEDLF-AQRREQLTQGDITLVSESGIYELADLQRLQQAGARAVLVGESLVKQPDPQQAIAALYGE 294          
BLAST of GO241451 vs. ExPASy Swiss-Prot
Match: TRPC_PROMT (Indole-3-glycerol phosphate synthase OS=Prochlorococcus marinus (strain NATL2A) GN=trpC PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.825e-14
Identity = 43/116 (37.07%), Postives = 65/116 (56.03%), Query Frame = 3
Query:   63 RXMTKICKMLGLTALVEVHDEREMDXVXGXEGXELIGINNRNLETFEVDISNPKKLXEGEXGEIIRQKNIIVVGEXGLFTPDDIAYXXXXXXXXXXXXESIVKQDDPGKGITGLFG 410
            + ++K+ + LGLT LVEVHD  E++ V       LIGINNRNL++F+ D+   KKL E    + I++ +I +V E GLF  +D+              ES++ Q+D   G+  L G
Sbjct:  179 KYLSKVAEHLGLTILVEVHDSEELERVLNINVFNLIGINNRNLKSFKTDLEVTKKLAENYANQ-IKENSITLVSESGLFNREDLDLVKSYGADAVLVGESLMSQEDILGGVKKLIG 293          
BLAST of GO241451 vs. ExPASy Swiss-Prot
Match: TRPC_PROM1 (Indole-3-glycerol phosphate synthase OS=Prochlorococcus marinus (strain NATL1A) GN=trpC PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.833e-13
Identity = 42/116 (36.21%), Postives = 65/116 (56.03%), Query Frame = 3
Query:   63 RXMTKICKMLGLTALVEVHDEREMDXVXGXEGXELIGINNRNLETFEVDISNPKKLXEGEXGEIIRQKNIIVVGEXGLFTPDDIAYXXXXXXXXXXXXESIVKQDDPGKGITGLFG 410
            + ++K+ + LGLT LVEVHD  E++ V       LIGINNRNL++F+ D+   KKL +    + I++ +I +V E GLF  +D+              ES++ Q+D   G+  L G
Sbjct:  179 KYLSKVAEHLGLTILVEVHDSEELERVLNINVFNLIGINNRNLKSFKTDLEVTKKLAKNYANQ-IKENSITLVSESGLFNREDLDLVKSYGADAVLVGESLMSQEDILGGVKKLVG 293          
BLAST of GO241451 vs. ExPASy Swiss-Prot
Match: TRPC_SYNR3 (Indole-3-glycerol phosphate synthase OS=Synechococcus sp. (strain RCC307) GN=trpC PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.085e-13
Identity = 38/104 (36.54%), Postives = 60/104 (57.69%), Query Frame = 3
Query:   69 MTKICKMLGLTALVEVHDEREMDXVXGXEGXELIGINNRNLETFEVDISNPKKLXEGEXGEIIRQKNIIVVGEXGLFTPDDIAYXXXXXXXXXXXXESIVKQDD 380
            + K+ + LGL  L+EVHD  E++   G EG +LIGINNR+L +F+ D++  + L     GE +RQ   ++V E GLF+ DD+              E++++Q D
Sbjct:  181 LLKVARSLGLQVLLEVHDAAELERALGFEGVQLIGINNRDLTSFDTDLATTETL-TATYGEQLRQSGALLVSESGLFSRDDLDRVQSAGADAVLVGEALMRQSD 283          
BLAST of GO241451 vs. ExPASy Swiss-Prot
Match: TRPC_SYNSC (Indole-3-glycerol phosphate synthase OS=Synechococcus sp. (strain CC9605) GN=trpC PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.335e-13
Identity = 41/114 (35.96%), Postives = 63/114 (55.26%), Query Frame = 3
Query:   63 RXMTKICKMLGLTALVEVHDEREMDXVXGXEGXELIGINNRNLETFEVDISNPKKLXEGEXGEIIRQKNIIVVGEXGLFTPDDIAYXXXXXXXXXXXXESIVKQDDPGKGITGL 404
            R + K    LGLT LVEVHD  EMD V    G  LIGINNR+L +FE D++  ++L   +  + ++Q+ +++V E GLF+  D+              E++++Q D   G+  L
Sbjct:  179 RYLNKAAAALGLTVLVEVHDATEMDRVLSIGGFPLIGINNRDLTSFETDLATTERLLV-DFNDRLKQQGVLLVSESGLFSRADLDRVQAAGAGAVLVGEALMRQQDVEAGLVQL 291          
The following BLAST results are available for this feature:
BLAST of GO241451 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
TRPC_ARATH3.106e-3759.29Indole-3-glycerol phosphate synthase, chloroplasti... [more]
TRPC_MICAN6.951e-2151.35Indole-3-glycerol phosphate synthase OS=Microcysti... [more]
TRPC_CYAP82.920e-1940.44Indole-3-glycerol phosphate synthase OS=Cyanothece... [more]
TRPC_CYAA57.953e-1742.48Indole-3-glycerol phosphate synthase OS=Cyanothece... [more]
TRPC_TRIEI1.039e-1642.24Indole-3-glycerol phosphate synthase OS=Trichodesm... [more]
TRPC_SYNY34.364e-1539.32Indole-3-glycerol phosphate synthase OS=Synechocys... [more]
TRPC_PROMT4.825e-1437.07Indole-3-glycerol phosphate synthase OS=Prochloroc... [more]
TRPC_PROM11.833e-1336.21Indole-3-glycerol phosphate synthase OS=Prochloroc... [more]
TRPC_SYNR34.085e-1336.54Indole-3-glycerol phosphate synthase OS=Synechococ... [more]
TRPC_SYNSC5.335e-1335.96Indole-3-glycerol phosphate synthase OS=Synechococ... [more]

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Properties
Property NameValue
Genbank description99 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 183 5, mRNA sequence.