GO241413

Overview
NameGO241413
Unique NameGO241413
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Libraries
Library NameType
Cara cara navel orange fruit cDNA librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of GO241413 vs. ExPASy Swiss-Prot
Match: RS5_CICAR (40S ribosomal protein S5 (Fragment) OS=Cicer arietinum GN=RPS5 PE=2 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 1.514e-47
Identity = 100/117 (85.47%), Postives = 104/117 (88.89%), Query Frame = 2 
Query:    2 MAVRIVKHAMEIIXLLXXQNPIQVIVDAVINSGPREXATRIGSAGVVRRQAVDISPLXRVNQAIYXLPPGARESAFRNIKTIAECLADELINAAKGSXNSYAIXXKDEIXRVAKAXR 352
            MAVRI+KHAMEII LL  QNPIQVIVDAV+NSGPRE ATRIGSAGVVRRQAVDISPL RVNQAIY L  GARE+AFRNIK+IAECLADELINAAKGS NSYAI  KDEI RVAKA R
Sbjct:   81 MAVRIIKHAMEIIHLLTDQNPIQVIVDAVVNSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKSIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 197
[Close]
BLAST of GO241413 vs. ExPASy Swiss-Prot
Match: RS5_NICPL (40S ribosomal protein S5 (Fragment) OS=Nicotiana plumbaginifolia GN=RPS5 PE=2 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 3.373e-47
Identity = 102/117 (87.18%), Postives = 103/117 (88.03%), Query Frame = 2 
Query:    2 MAVRIVKHAMEIIXLLXXQNPIQVIVDAVINSGPREXATRIGSAGVVRRQAVDISPLXRVNQAIYXLPPGARESAFRNIKTIAECLADELINAAKGSXNSYAIXXKDEIXRVAKAXR 352
            MAVRIVKHAMEII LL   NPIQVIVDAVINSGPRE ATRIGSAGVVRRQAVDISPL RV+QAIY L  GARESAFRNIKTIAECLADELINAAKGS NSYAI  KDEI RVAKA R
Sbjct:   38 MAVRIVKHAMEIIHLLTDLNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVSQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 154
[Close]
BLAST of GO241413 vs. ExPASy Swiss-Prot
Match: RS51_ARATH (40S ribosomal protein S5-1 OS=Arabidopsis thaliana GN=RPS5A PE=1 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 1.282e-46
Identity = 98/117 (83.76%), Postives = 103/117 (88.03%), Query Frame = 2 
Query:    2 MAVRIVKHAMEIIXLLXXQNPIQVIVDAVINSGPREXATRIGSAGVVRRQAVDISPLXRVNQAIYXLPPGARESAFRNIKTIAECLADELINAAKGSXNSYAIXXKDEIXRVAKAXR 352
            MAVRIVKHAMEII LL   NPIQVI+DA++NSGPRE ATRIGSAGVVRRQAVDISPL RVNQAI+ L  GARE+AFRNIKTIAECLADELINAAKGS NSYAI  KDEI RVAKA R
Sbjct:   91 MAVRIVKHAMEIIHLLSDLNPIQVIIDAIVNSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIFLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 207
[Close]
BLAST of GO241413 vs. ExPASy Swiss-Prot
Match: RS52_ARATH (40S ribosomal protein S5-2 OS=Arabidopsis thaliana GN=RPS5B PE=1 SV=2)

HSP 1 Score: 185.267 bits (469), Expect = 2.186e-46
Identity = 97/117 (82.91%), Postives = 103/117 (88.03%), Query Frame = 2 
Query:    2 MAVRIVKHAMEIIXLLXXQNPIQVIVDAVINSGPREXATRIGSAGVVRRQAVDISPLXRVNQAIYXLPPGARESAFRNIKTIAECLADELINAAKGSXNSYAIXXKDEIXRVAKAXR 352
            MAVRIVKHAMEII LL   NPIQVI+DA++NSGPRE ATRIGSAGVVRRQAVDISPL RVNQAI+ +  GARE+AFRNIKTIAECLADELINAAKGS NSYAI  KDEI RVAKA R
Sbjct:   91 MAVRIVKHAMEIIHLLSDLNPIQVIIDAIVNSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIFLITTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 207
[Close]
BLAST of GO241413 vs. ExPASy Swiss-Prot
Match: RS5_HUMAN (40S ribosomal protein S5 OS=Homo sapiens GN=RPS5 PE=1 SV=4)

HSP 1 Score: 173.326 bits (438), Expect = 8.597e-43
Identity = 89/117 (76.07%), Postives = 100/117 (85.47%), Query Frame = 2 
Query:    2 MAVRIVKHAMEIIXLLXXQNPIQVIVDAVINSGPREXATRIGSAGVVRRQAVDISPLXRVNQAIYXLPPGARESAFRNIKTIAECLADELINAAKGSXNSYAIXXKDEIXRVAKAXR 352
            M VRIVKHA EII LL  +NP+QV+V+A+INSGPRE +TRIG AG VRRQAVD+SPL RVNQAI+ L  GARE+AFRNIKTIAECLADELINAAKGS NSYAI  KDE+ RVAK+ R
Sbjct:   88 MTVRIVKHAFEIIHLLTGENPLQVLVNAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDELERVAKSNR 204
[Close]
BLAST of GO241413 vs. ExPASy Swiss-Prot
Match: RS5_BOVIN (40S ribosomal protein S5 OS=Bos taurus GN=RPS5 PE=2 SV=3)

HSP 1 Score: 173.326 bits (438), Expect = 8.597e-43
Identity = 89/117 (76.07%), Postives = 100/117 (85.47%), Query Frame = 2 
Query:    2 MAVRIVKHAMEIIXLLXXQNPIQVIVDAVINSGPREXATRIGSAGVVRRQAVDISPLXRVNQAIYXLPPGARESAFRNIKTIAECLADELINAAKGSXNSYAIXXKDEIXRVAKAXR 352
            M VRIVKHA EII LL  +NP+QV+V+A+INSGPRE +TRIG AG VRRQAVD+SPL RVNQAI+ L  GARE+AFRNIKTIAECLADELINAAKGS NSYAI  KDE+ RVAK+ R
Sbjct:   88 MTVRIVKHAFEIIHLLTGENPLQVLVNAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDELERVAKSNR 204
[Close]
BLAST of GO241413 vs. ExPASy Swiss-Prot
Match: RS5_CAEEL (40S ribosomal protein S5 OS=Caenorhabditis elegans GN=rps-5 PE=1 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 1.466e-42
Identity = 88/117 (75.21%), Postives = 100/117 (85.47%), Query Frame = 2 
Query:    2 MAVRIVKHAMEIIXLLXXQNPIQVIVDAVINSGPREXATRIGSAGVVRRQAVDISPLXRVNQAIYXLPPGARESAFRNIKTIAECLADELINAAKGSXNSYAIXXKDEIXRVAKAXR 352
            M VRIVKHA EII LL  +NP+QV+V+AVINSGPRE +TRIG AG VRRQAVD++PL RVNQAI+ L  GARE+AFRN+KTIAECLADELINAAKGS NSYAI  KDE+ RVAK+ R
Sbjct:   94 MTVRIVKHAFEIIYLLTGENPVQVLVNAVINSGPREDSTRIGRAGTVRRQAVDVAPLRRVNQAIWLLCTGAREAAFRNVKTIAECLADELINAAKGSSNSYAIKKKDELERVAKSNR 210
[Close]
BLAST of GO241413 vs. ExPASy Swiss-Prot
Match: RS5_RAT (40S ribosomal protein S5 OS=Rattus norvegicus GN=Rps5 PE=2 SV=3)

HSP 1 Score: 171.4 bits (433), Expect = 3.267e-42
Identity = 88/117 (75.21%), Postives = 99/117 (84.62%), Query Frame = 2 
Query:    2 MAVRIVKHAMEIIXLLXXQNPIQVIVDAVINSGPREXATRIGSAGVVRRQAVDISPLXRVNQAIYXLPPGARESAFRNIKTIAECLADELINAAKGSXNSYAIXXKDEIXRVAKAXR 352
            M VRIVKHA EII LL  +NP+QV+V+A+INSGPRE +TRIG AG VRRQAVD+SPL RVNQAI+ L  GARE+AFRNIKTIAECLADELINA KGS NSYAI  KDE+ RVAK+ R
Sbjct:   88 MTVRIVKHAFEIIHLLTGENPLQVLVNAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADELINARKGSSNSYAIKKKDELERVAKSNR 204
[Close]
BLAST of GO241413 vs. ExPASy Swiss-Prot
Match: RS5_MOUSE (40S ribosomal protein S5 OS=Mus musculus GN=Rps5 PE=2 SV=3)

HSP 1 Score: 171.4 bits (433), Expect = 3.267e-42
Identity = 88/117 (75.21%), Postives = 99/117 (84.62%), Query Frame = 2 
Query:    2 MAVRIVKHAMEIIXLLXXQNPIQVIVDAVINSGPREXATRIGSAGVVRRQAVDISPLXRVNQAIYXLPPGARESAFRNIKTIAECLADELINAAKGSXNSYAIXXKDEIXRVAKAXR 352
            M VRIVKHA EII LL  +NP+QV+V+A+INSGPRE +TRIG AG VRRQAVD+SPL RVNQAI+ L  GARE+AFRNIK IAECLADELINAAKGS NSYAI  KDE+ RVAK+ R
Sbjct:   88 MTVRIVKHAFEIIHLLTGENPLQVLVNAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKNIAECLADELINAAKGSSNSYAIKKKDELERVAKSNR 204
[Close]
BLAST of GO241413 vs. ExPASy Swiss-Prot
Match: RS5A_DROME (40S ribosomal protein S5a OS=Drosophila melanogaster GN=RpS5a PE=1 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 4.267e-42
Identity = 87/117 (74.36%), Postives = 99/117 (84.62%), Query Frame = 2 
Query:    2 MAVRIVKHAMEIIXLLXXQNPIQVIVDAVINSGPREXATRIGSAGVVRRQAVDISPLXRVNQAIYXLPPGARESAFRNIKTIAECLADELINAAKGSXNSYAIXXKDEIXRVAKAXR 352
            MA RIVKH+ EII LL  +NP+Q++V A+INSGPRE +TRIG AG VRRQAVD+SPL RVNQAI+ L  GARE+AFRNIKTIAECLADELINAAKGS NSYAI  KDE+ RVAK+ R
Sbjct:  112 MACRIVKHSFEIIHLLTGENPLQILVSAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDELERVAKSNR 228
The following BLAST results are available for this feature:
BLAST of GO241413 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
RS5_CICAR1.514e-4785.4740S ribosomal protein S5 (Fragment) OS=Cicer ariet... [more]
RS5_NICPL3.373e-4787.1840S ribosomal protein S5 (Fragment) OS=Nicotiana p... [more]
RS51_ARATH1.282e-4683.7640S ribosomal protein S5-1 OS=Arabidopsis thaliana... [more]
RS52_ARATH2.186e-4682.9140S ribosomal protein S5-2 OS=Arabidopsis thaliana... [more]
RS5_HUMAN8.597e-4376.0740S ribosomal protein S5 OS=Homo sapiens GN=RPS5 P... [more]
RS5_BOVIN8.597e-4376.0740S ribosomal protein S5 OS=Bos taurus GN=RPS5 PE=... [more]
RS5_CAEEL1.466e-4275.2140S ribosomal protein S5 OS=Caenorhabditis elegans... [more]
RS5_RAT3.267e-4275.2140S ribosomal protein S5 OS=Rattus norvegicus GN=R... [more]
RS5_MOUSE3.267e-4275.2140S ribosomal protein S5 OS=Mus musculus GN=Rps5 P... [more]
RS5A_DROME4.267e-4274.3640S ribosomal protein S5a OS=Drosophila melanogast... [more]

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Properties
Property NameValue
Genbank description61 Cara cara navel orange fruit cDNA library Citrus sinensis cDNA clone 145 5, mRNA sequence.