GE213485

Overview
NameGE213485
Unique NameGE213485
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10775 contig Csv1_Contig10775:1483..1901. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of GE213485 vs. ExPASy Swiss-Prot
Match: METB_ARATH (Cystathionine gamma-synthase, chloroplastic OS=Arabidopsis thaliana GN=CGS1 PE=2 SV=3)

HSP 1 Score: 223.787 bits (569), Expect = 2.134e-58
Identity = 105/125 (84.00%), Postives = 114/125 (91.20%), Query Frame = -3
Query:   25 VQQQNSTALRMAEILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADV 399
            VQQQNSTA RMAEILEAHPKV  V+YPGL SHPEH +A +QMTGFGGVVSFE+DGD+  TIKF+D+LKIPYIAPSFGGCESIVDQPAIMSYWDL Q ERLKYGI DNLVRFSFGVEDFED+KAD+
Sbjct:  432 VQQQNSTAFRMAEILEAHPKVSHVYYPGLPSHPEHELAKRQMTGFGGVVSFEIDGDIETTIKFVDSLKIPYIAPSFGGCESIVDQPAIMSYWDLPQEERLKYGIKDNLVRFSFGVEDFEDVKADI 556          
BLAST of GE213485 vs. ExPASy Swiss-Prot
Match: METC_COXBU (Cystathionine beta-lyase OS=Coxiella burnetii GN=metC PE=1 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 1.492e-27
Identity = 58/131 (44.27%), Postives = 88/131 (67.18%), Query Frame = -3
Query:   19 VAAEVQQQNSTALRMAEILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVPA 411
            +A  +++    A+++A+ LE HPKVKRV+YPGL SHP+H IA +QM  FGG++S E+  DL  T K ++  ++  +A S GG ES+++ PAIM++  + Q+ER K GI D  +R S G+E   DL+ D+ A
Sbjct:  255 LAIRMERHCENAMQLAQWLEKHPKVKRVYYPGLPSHPQHSIAKKQMRYFGGMISVELKCDLNETKKVLERCQLFTLAESLGGVESLIEHPAIMTHASIPQAERQKLGITDGFIRLSVGIEAITDLRHDLEA 385          
BLAST of GE213485 vs. ExPASy Swiss-Prot
Match: CGL_DICDI (Cystathionine gamma-lyase OS=Dictyostelium discoideum GN=cysA PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 2.154e-26
Identity = 57/129 (44.19%), Postives = 83/129 (64.34%), Query Frame = -3
Query:   25 VAAEVQQQNSTALRMAEILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADV 411
            V  E  Q+N+ A+     LE HPKV+RV YPGL SHP+H I  +QM G+GG+V F V G +  +  F++ +K+  +A S GG ES+++ P++M++  +   ER K GI D L+R S G+ED  DL AD+
Sbjct:  254 VRMEAHQKNAFAI--CNFLEKHPKVERVIYPGLPSHPQHEICKRQMKGYGGMVVFFVKGSIDQSRSFLENIKLFALAESLGGVESLIELPSVMTHASVPAEERAKLGISDTLIRLSVGIEDINDLLADI 380          
BLAST of GE213485 vs. ExPASy Swiss-Prot
Match: METZ_PSEAE (O-succinylhomoserine sulfhydrylase OS=Pseudomonas aeruginosa GN=metZ PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 9.050e-25
Identity = 56/131 (42.75%), Postives = 85/131 (64.89%), Query Frame = -3
Query:    7 VQQQNSTALRMAEILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADVPARAAA 399
            +Q  +++AL +AE LE  P ++RV+Y GL SHP+H +A +Q +GFG VVSF+V G   A  +FIDA ++  I  + G  ++ +  PA  S+  LS  +R + GI D+L+R + G+ED +DLKAD+    AA
Sbjct:  272 MQAHSASALALAEWLERQPGIERVYYAGLPSHPQHELARRQQSGFGAVVSFDVKGGRDAAWRFIDATRMVSITTNLGDTKTTIAHPATTSHGRLSPEDRARAGIGDSLIRVAVGLEDLDDLKADMARGLAA 402          
BLAST of GE213485 vs. ExPASy Swiss-Prot
Match: METB_HELPJ (Cystathionine gamma-synthase OS=Helicobacter pylori J99 GN=metB PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.707e-23
Identity = 57/126 (45.24%), Postives = 82/126 (65.08%), Query Frame = -3
Query:   25 EVQQQNSTALRMAEILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADV 402
            E  Q+N  AL +AE LE HPKV+RV+YPGL +HP H +A  QM GF G+ SF +  D  A + F+++LK+  +  S GG ES+V  PA+M++  + +++R   GI D LVR S G+E  +DL  D+
Sbjct:  250 EAHQKN--ALCVAEFLEKHPKVERVYYPGLPTHPNHELAKAQMRGFSGMFSFTLKNDSEA-VAFVESLKLFILGESLGGVESLVGIPALMTHACIPKAQREAAGIRDGLVRLSVGIEHEQDLLEDL 372          
BLAST of GE213485 vs. ExPASy Swiss-Prot
Match: METB_HELPY (Cystathionine gamma-synthase OS=Helicobacter pylori GN=metB PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 4.966e-23
Identity = 56/126 (44.44%), Postives = 83/126 (65.87%), Query Frame = -3
Query:   25 EVQQQNSTALRMAEILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADV 402
            E  Q+N  AL +AE LE HPKV+RV+YPGL +HP + +A +QM GF G++SF +  D  A + F+++LK+  +  S GG ES+V  PA M++  + +++R   GI D LVR S G+E  +DL  D+
Sbjct:  250 EAHQKN--ALCVAEFLEKHPKVERVYYPGLPTHPNYELAKKQMRGFSGMLSFTLKNDSEA-VAFVESLKLFILGESLGGVESLVGIPAFMTHACIPKTQREAAGIRDGLVRLSVGIEHEQDLLEDL 372          
BLAST of GE213485 vs. ExPASy Swiss-Prot
Match: METC_LACLM (Cystathionine beta-lyase OS=Lactococcus lactis subsp. cremoris (strain MG1363) GN=metC PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.106e-22
Identity = 53/129 (41.09%), Postives = 81/129 (62.79%), Query Frame = -3
Query:   25 VAAEVQQQNSTALRMAEILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADV 411
            +A  ++  ++ A ++AE LE    V +V+YPGL SHP H IA +QM+ FGG++SFE+  D  A   F++ L    +A S GG ES+++ PA+M++  + +  R + GI D L+R S GVE  EDL  D+
Sbjct:  246 LALRMEAHSANAQKIAEFLETSKAVSKVYYPGLNSHPGHEIAKKQMSAFGGMISFELT-DENAVKDFVENLSYFTLAESLGGVESLIEVPAVMTHASIPKELREEIGIKDGLIRLSVGVEAIEDLLTDI 373          
BLAST of GE213485 vs. ExPASy Swiss-Prot
Match: METC_LACLA (Cystathionine beta-lyase OS=Lactococcus lactis subsp. lactis GN=metC PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.106e-22
Identity = 53/129 (41.09%), Postives = 81/129 (62.79%), Query Frame = -3
Query:   25 VAAEVQQQNSTALRMAEILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADV 411
            +A  ++  ++ A ++AE LE    V +V+YPGL SHP H IA +QM+ FGG++SFE+  D  A   F++ L    +A S GG ES+++ PA+M++  + +  R + GI D L+R S GVE  EDL  D+
Sbjct:  246 LALRMEAHSANAQKIAEFLETSKAVSKVYYPGLNSHPGHEIAKKQMSAFGGMISFELT-DENAVKDFVENLSYFTLAESLGGVESLIEVPAVMTHASIPKELREEIGIKDGLIRLSVGVEAIEDLLTDI 373          
BLAST of GE213485 vs. ExPASy Swiss-Prot
Match: CGL_PIG (Cystathionine gamma-lyase OS=Sus scrofa GN=CTH PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.106e-22
Identity = 51/125 (40.80%), Postives = 81/125 (64.80%), Query Frame = -3
Query:   25 VQQQNSTALRMAEILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADV 399
            +++     + +A+ LE+HP V++V YPGL SHP+H +A +Q TG  G++SF + G L     F+ +LK+  +A S GG ES+ + PAIM++  + +S+R   GI D L+R S G+ED +DL  D+
Sbjct:  266 MEKHFENGMAVAQFLESHPLVEKVIYPGLPSHPQHELAKRQCTGCPGMISFYIKGSLHHAETFLKSLKLFTLAESLGGYESLAELPAIMTHSSVPKSDREVLGIRDTLIRLSVGLEDKQDLMDDL 390          
BLAST of GE213485 vs. ExPASy Swiss-Prot
Match: METC_LACLC (Cystathionine beta-lyase OS=Lactococcus lactis subsp. cremoris GN=metC PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 3.219e-22
Identity = 53/129 (41.09%), Postives = 82/129 (63.57%), Query Frame = -3
Query:   25 VAAEVQQQNSTALRMAEILEAHPKVKRVHYPGLKSHPEHHIATQQMTGFGGVVSFEVDGDLTATIKFIDALKIPYIAPSFGGCESIVDQPAIMSYWDLSQSERLKYGIMDNLVRFSFGVEDFEDLKADV 411
            +A  ++  ++ A ++AE LEA   V +V+YPGL +H  H IA +QMT FGG++SFE+  D  A   F++ L+   +A S GG ES+++ PA+M++  + +  R + GI D L+R S GVE  EDL  D+
Sbjct:  246 LAPRMEAHSANAQKIAEFLEASQAVSKVYYPGLVNHEGHEIAKKQMTAFGGMISFELT-DENAVKNFVENLRYFTLAESLGGVESLIEVPAVMTHASIPKELREEIGIKDGLIRLSVGVEALEDLLTDL 373          
The following BLAST results are available for this feature:
BLAST of GE213485 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
METB_ARATH2.134e-5884.00Cystathionine gamma-synthase, chloroplastic OS=Ara... [more]
METC_COXBU1.492e-2744.27Cystathionine beta-lyase OS=Coxiella burnetii GN=m... [more]
CGL_DICDI2.154e-2644.19Cystathionine gamma-lyase OS=Dictyostelium discoid... [more]
METZ_PSEAE9.050e-2542.75O-succinylhomoserine sulfhydrylase OS=Pseudomonas ... [more]
METB_HELPJ1.707e-2345.24Cystathionine gamma-synthase OS=Helicobacter pylor... [more]
METB_HELPY4.966e-2344.44Cystathionine gamma-synthase OS=Helicobacter pylor... [more]
METC_LACLM1.106e-2241.09Cystathionine beta-lyase OS=Lactococcus lactis sub... [more]
METC_LACLA1.106e-2241.09Cystathionine beta-lyase OS=Lactococcus lactis sub... [more]
CGL_PIG1.106e-2240.80Cystathionine gamma-lyase OS=Sus scrofa GN=CTH PE=... [more]
METC_LACLC3.219e-2241.09Cystathionine beta-lyase OS=Lactococcus lactis sub... [more]

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Properties
Property NameValue
Genbank description368 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.