GE213444

Overview
NameGE213444
Unique NameGE213444
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2639 contig Csv1_Contig2639:1..328. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of GE213444 vs. ExPASy Swiss-Prot
Match: RS6_ASPOF (40S ribosomal protein S6 OS=Asparagus officinalis GN=rps6 PE=2 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 2.368e-41
Identity = 79/81 (97.53%), Postives = 81/81 (100.00%), Query Frame = 1
Query:   79 MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVNGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGT 321
            MKFNIANPTTGCQKKLEIDDDQKLRAF+DKRISQEV+GDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGT
Sbjct:    1 MKFNIANPTTGCQKKLEIDDDQKLRAFYDKRISQEVSGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGT 81          
BLAST of GE213444 vs. ExPASy Swiss-Prot
Match: RS62_ARATH (40S ribosomal protein S6-2 OS=Arabidopsis thaliana GN=RPS6B PE=1 SV=3)

HSP 1 Score: 167.162 bits (422), Expect = 2.368e-41
Identity = 78/81 (96.30%), Postives = 81/81 (100.00%), Query Frame = 1
Query:   79 MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVNGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGT 321
            MKFN+ANPTTGCQKKLEIDDDQKLRAFFDKR+SQEV+GDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGT
Sbjct:    1 MKFNVANPTTGCQKKLEIDDDQKLRAFFDKRLSQEVSGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGT 81          
BLAST of GE213444 vs. ExPASy Swiss-Prot
Match: RS61_ARATH (40S ribosomal protein S6-1 OS=Arabidopsis thaliana GN=RPS6A PE=1 SV=2)

HSP 1 Score: 164.466 bits (415), Expect = 1.535e-40
Identity = 77/81 (95.06%), Postives = 80/81 (98.77%), Query Frame = 1
Query:   79 MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVNGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGT 321
            MKFN+ANPTTGCQKKLEIDDDQKLRAF+DKRISQEV+GDALGEEFKGYVFKI GGCDKQGFPMKQGVLTPGRVRLLLHRGT
Sbjct:    1 MKFNVANPTTGCQKKLEIDDDQKLRAFYDKRISQEVSGDALGEEFKGYVFKIKGGCDKQGFPMKQGVLTPGRVRLLLHRGT 81          
BLAST of GE213444 vs. ExPASy Swiss-Prot
Match: RS6_ASHGO (40S ribosomal protein S6 OS=Ashbya gossypii GN=RPS6 PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 1.947e-27
Identity = 55/82 (67.07%), Postives = 68/82 (82.93%), Query Frame = 1
Query:   79 MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVNGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTS 324
            MK NI+ P  G QK +E+DD+ ++R F+DKRI QEVNG+A+G+EFKGYVFKI GG DKQGFPMKQGVL P RV+LL+ +GTS
Sbjct:    1 MKLNISYPVNGTQKTIEVDDEHRVRVFYDKRIGQEVNGEAVGDEFKGYVFKIAGGNDKQGFPMKQGVLLPTRVKLLMAKGTS 82          
BLAST of GE213444 vs. ExPASy Swiss-Prot
Match: RS6_RAT (40S ribosomal protein S6 OS=Rattus norvegicus GN=Rps6 PE=1 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 1.262e-26
Identity = 56/82 (68.29%), Postives = 68/82 (82.93%), Query Frame = 1
Query:   79 MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVNGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTS 324
            MK NI+ P TGCQK +E+DD++KLR F++KR++ EV  DALGEE+KGYV +I GG DKQGFPMKQGVLT GRVRLLL +G S
Sbjct:    1 MKLNISFPATGCQKLIEVDDERKLRTFYEKRMATEVAADALGEEWKGYVVRISGGNDKQGFPMKQGVLTHGRVRLLLSKGHS 82          
BLAST of GE213444 vs. ExPASy Swiss-Prot
Match: RS6_MOUSE (40S ribosomal protein S6 OS=Mus musculus GN=Rps6 PE=1 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 1.262e-26
Identity = 56/82 (68.29%), Postives = 68/82 (82.93%), Query Frame = 1
Query:   79 MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVNGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTS 324
            MK NI+ P TGCQK +E+DD++KLR F++KR++ EV  DALGEE+KGYV +I GG DKQGFPMKQGVLT GRVRLLL +G S
Sbjct:    1 MKLNISFPATGCQKLIEVDDERKLRTFYEKRMATEVAADALGEEWKGYVVRISGGNDKQGFPMKQGVLTHGRVRLLLSKGHS 82          
BLAST of GE213444 vs. ExPASy Swiss-Prot
Match: RS6_MACFA (40S ribosomal protein S6 OS=Macaca fascicularis GN=RPS6 PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 1.262e-26
Identity = 56/82 (68.29%), Postives = 68/82 (82.93%), Query Frame = 1
Query:   79 MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVNGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTS 324
            MK NI+ P TGCQK +E+DD++KLR F++KR++ EV  DALGEE+KGYV +I GG DKQGFPMKQGVLT GRVRLLL +G S
Sbjct:    1 MKLNISFPATGCQKLIEVDDERKLRTFYEKRMATEVAADALGEEWKGYVVRISGGNDKQGFPMKQGVLTHGRVRLLLSKGHS 82          
BLAST of GE213444 vs. ExPASy Swiss-Prot
Match: RS6_HUMAN (40S ribosomal protein S6 OS=Homo sapiens GN=RPS6 PE=1 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 1.262e-26
Identity = 56/82 (68.29%), Postives = 68/82 (82.93%), Query Frame = 1
Query:   79 MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVNGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTS 324
            MK NI+ P TGCQK +E+DD++KLR F++KR++ EV  DALGEE+KGYV +I GG DKQGFPMKQGVLT GRVRLLL +G S
Sbjct:    1 MKLNISFPATGCQKLIEVDDERKLRTFYEKRMATEVAADALGEEWKGYVVRISGGNDKQGFPMKQGVLTHGRVRLLLSKGHS 82          
BLAST of GE213444 vs. ExPASy Swiss-Prot
Match: RS6_BOVIN (40S ribosomal protein S6 OS=Bos taurus GN=RPS6 PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 1.262e-26
Identity = 56/82 (68.29%), Postives = 68/82 (82.93%), Query Frame = 1
Query:   79 MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVNGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTS 324
            MK NI+ P TGCQK +E+DD++KLR F++KR++ EV  DALGEE+KGYV +I GG DKQGFPMKQGVLT GRVRLLL +G S
Sbjct:    1 MKLNISFPATGCQKLIEVDDERKLRTFYEKRMATEVAADALGEEWKGYVVRISGGNDKQGFPMKQGVLTHGRVRLLLSKGHS 82          
BLAST of GE213444 vs. ExPASy Swiss-Prot
Match: RS6_KLUMA (40S ribosomal protein S6 OS=Kluyveromyces marxianus GN=RPS6 PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 1.648e-26
Identity = 55/82 (67.07%), Postives = 68/82 (82.93%), Query Frame = 1
Query:   79 MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVNGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTS 324
            MK NI+ P  G QK +EIDD+ ++R F+DKRI QEV+G+A+G+EFKGYVFKI GG DKQGFPMKQGVL P RV+LL+ +GTS
Sbjct:    1 MKLNISYPINGTQKCVEIDDEHRVRVFYDKRIGQEVDGEAVGDEFKGYVFKIAGGNDKQGFPMKQGVLLPTRVKLLMAKGTS 82          
The following BLAST results are available for this feature:
BLAST of GE213444 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
RS6_ASPOF2.368e-4197.5340S ribosomal protein S6 OS=Asparagus officinalis ... [more]
RS62_ARATH2.368e-4196.3040S ribosomal protein S6-2 OS=Arabidopsis thaliana... [more]
RS61_ARATH1.535e-4095.0640S ribosomal protein S6-1 OS=Arabidopsis thaliana... [more]
RS6_ASHGO1.947e-2767.0740S ribosomal protein S6 OS=Ashbya gossypii GN=RPS... [more]
RS6_RAT1.262e-2668.2940S ribosomal protein S6 OS=Rattus norvegicus GN=R... [more]
RS6_MOUSE1.262e-2668.2940S ribosomal protein S6 OS=Mus musculus GN=Rps6 P... [more]
RS6_MACFA1.262e-2668.2940S ribosomal protein S6 OS=Macaca fascicularis GN... [more]
RS6_HUMAN1.262e-2668.2940S ribosomal protein S6 OS=Homo sapiens GN=RPS6 P... [more]
RS6_BOVIN1.262e-2668.2940S ribosomal protein S6 OS=Bos taurus GN=RPS6 PE=... [more]
RS6_KLUMA1.648e-2667.0740S ribosomal protein S6 OS=Kluyveromyces marxianu... [more]

Pages

back to top
Properties
Property NameValue
Genbank description321 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.