GE213437

Overview
NameGE213437
Unique NameGE213437
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11325 contig Csv1_Contig11325:337..802. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of GE213437 vs. ExPASy Swiss-Prot
Match: IN37_SPIOL (37 kDa inner envelope membrane protein, chloroplastic OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 233.417 bits (594), Expect = 3.649e-61
Identity = 112/137 (81.75%), Postives = 123/137 (89.78%), Query Frame = -2 
Query:   22 KCSLSATSRPASQPRFIQHKKEAFWFYRFLSIVYDHVINPGHWTEDMRDDALEPADLSNRNMLVVDVXXXXXXXXXGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIVEGDAEDLPFPTDYADRYVSARSIEY 432
            KC+LSA+ RPASQPRFIQ+K+EAFWFYRFLSIVYD++INPGHWTEDMRD ALEPADL+NRNMLVVDV         GI+KHVD KNVTILDQSPHQLAKAK K+PLKEC+I+EGDAEDLPFPTDYADRYVSA SIEY
Sbjct:   58 KCTLSASERPASQPRFIQNKQEAFWFYRFLSIVYDNIINPGHWTEDMRDVALEPADLNNRNMLVVDVGGGTGFTTLGIIKHVDPKNVTILDQSPHQLAKAKAKKPLKECRIIEGDAEDLPFPTDYADRYVSAGSIEY 194
The following BLAST results are available for this feature:
BLAST of GE213437 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
IN37_SPIOL3.649e-6181.7537 kDa inner envelope membrane protein, chloroplas... [more]
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Properties
Property NameValue
Genbank description313 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.