GE213428

Overview
NameGE213428
Unique NameGE213428
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13715 contig Csv1_Contig13715:1..436. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of GE213428 vs. ExPASy Swiss-Prot
Match: VATL_KALDA (V-type proton ATPase 16 kDa proteolipid subunit OS=Kalanchoe daigremontiana PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 1.262e-27
Identity = 65/78 (83.33%), Postives = 65/78 (83.33%), Query Frame = 2
Query:  182 MSSTFSGDETAPXXXXXXXXXXXXXSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIIST 415
            MSSTFSGDETAP             SCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIIST
Sbjct:    1 MSSTFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIIST 78          
BLAST of GE213428 vs. ExPASy Swiss-Prot
Match: VATL_GOSHI (V-type proton ATPase 16 kDa proteolipid subunit OS=Gossypium hirsutum GN=CVA16-2 PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 1.262e-27
Identity = 65/78 (83.33%), Postives = 65/78 (83.33%), Query Frame = 2
Query:  182 MSSTFSGDETAPXXXXXXXXXXXXXSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIIST 415
            MSSTFSGDETAP             SCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIIST
Sbjct:    1 MSSTFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIIST 78          
BLAST of GE213428 vs. ExPASy Swiss-Prot
Match: VATL2_ARATH (V-type proton ATPase 16 kDa proteolipid subunit c2 OS=Arabidopsis thaliana GN=VHA-C2 PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 2.812e-27
Identity = 64/78 (82.05%), Postives = 65/78 (83.33%), Query Frame = 2
Query:  182 MSSTFSGDETAPXXXXXXXXXXXXXSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIIST 415
            M+STFSGDETAP             SCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIIST
Sbjct:    1 MASTFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIIST 78          
BLAST of GE213428 vs. ExPASy Swiss-Prot
Match: VATL_TOBAC (V-type proton ATPase 16 kDa proteolipid subunit OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 4.797e-27
Identity = 64/78 (82.05%), Postives = 64/78 (82.05%), Query Frame = 2
Query:  182 MSSTFSGDETAPXXXXXXXXXXXXXSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIIST 415
            M STFSGDETAP             SCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIIST
Sbjct:    1 MPSTFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIIST 78          
BLAST of GE213428 vs. ExPASy Swiss-Prot
Match: VATL_ORYSJ (V-type proton ATPase 16 kDa proteolipid subunit OS=Oryza sativa subsp. japonica GN=VATP-P1 PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 4.797e-27
Identity = 64/78 (82.05%), Postives = 64/78 (82.05%), Query Frame = 2
Query:  182 MSSTFSGDETAPXXXXXXXXXXXXXSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIIST 415
            MSS FSGDETAP             SCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIIST
Sbjct:    1 MSSVFSGDETAPFFGFLGAASALIFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIIST 78          
BLAST of GE213428 vs. ExPASy Swiss-Prot
Match: VATL_ORYSI (V-type proton ATPase 16 kDa proteolipid subunit OS=Oryza sativa subsp. indica GN=VATP-P1 PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 4.797e-27
Identity = 64/78 (82.05%), Postives = 64/78 (82.05%), Query Frame = 2
Query:  182 MSSTFSGDETAPXXXXXXXXXXXXXSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIIST 415
            MSS FSGDETAP             SCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIIST
Sbjct:    1 MSSVFSGDETAPFFGFLGAASALIFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIIST 78          
BLAST of GE213428 vs. ExPASy Swiss-Prot
Match: VATL_AVESA (V-type proton ATPase 16 kDa proteolipid subunit OS=Avena sativa GN=VATP-P1 PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 4.797e-27
Identity = 64/78 (82.05%), Postives = 64/78 (82.05%), Query Frame = 2
Query:  182 MSSTFSGDETAPXXXXXXXXXXXXXSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIIST 415
            MSS FSGDETAP             SCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIIST
Sbjct:    1 MSSVFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIIST 78          
BLAST of GE213428 vs. ExPASy Swiss-Prot
Match: VATL1_ARATH (V-type proton ATPase 16 kDa proteolipid subunit c1/c3/c5 OS=Arabidopsis thaliana GN=VHA-C1 PE=1 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 1.396e-26
Identity = 63/76 (82.89%), Postives = 63/76 (82.89%), Query Frame = 2
Query:  188 STFSGDETAPXXXXXXXXXXXXXSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIIST 415
            STFSGDETAP             SCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIIST
Sbjct:    2 STFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIIST 77          
BLAST of GE213428 vs. ExPASy Swiss-Prot
Match: VATL_MESCR (V-type proton ATPase 16 kDa proteolipid subunit OS=Mesembryanthemum crystallinum GN=VMAC1 PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 2.381e-26
Identity = 62/78 (79.49%), Postives = 64/78 (82.05%), Query Frame = 2
Query:  182 MSSTFSGDETAPXXXXXXXXXXXXXSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIIST 415
            MS+ F+GDETAP             SCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIIST
Sbjct:    1 MSTVFNGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIIST 78          
BLAST of GE213428 vs. ExPASy Swiss-Prot
Match: VATL_BETVU (V-type proton ATPase 16 kDa proteolipid subunit OS=Beta vulgaris GN=VMAC1 PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 2.381e-26
Identity = 62/78 (79.49%), Postives = 64/78 (82.05%), Query Frame = 2
Query:  182 MSSTFSGDETAPXXXXXXXXXXXXXSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIIST 415
            MS+ F+GDETAP             SCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIIST
Sbjct:    1 MSTVFNGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIIST 78          
The following BLAST results are available for this feature:
BLAST of GE213428 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
VATL_KALDA1.262e-2783.33V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL_GOSHI1.262e-2783.33V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL2_ARATH2.812e-2782.05V-type proton ATPase 16 kDa proteolipid subunit c2... [more]
VATL_TOBAC4.797e-2782.05V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL_ORYSJ4.797e-2782.05V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL_ORYSI4.797e-2782.05V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL_AVESA4.797e-2782.05V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL1_ARATH1.396e-2682.89V-type proton ATPase 16 kDa proteolipid subunit c1... [more]
VATL_MESCR2.381e-2679.49V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL_BETVU2.381e-2679.49V-type proton ATPase 16 kDa proteolipid subunit OS... [more]

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Properties
Property NameValue
Genbank description303 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.