GE213423

Overview
NameGE213423
Unique NameGE213423
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig585 contig Csv1_Contig585:1064..1683. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of GE213423 vs. ExPASy Swiss-Prot
Match: BAK1_ARATH (BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 OS=Arabidopsis thaliana GN=BAK1 PE=1 SV=2)

HSP 1 Score: 229.95 bits (585), Expect = 7.740e-60
Identity = 121/155 (78.06%), Postives = 129/155 (83.23%), Query Frame = -1
Query:  150 PRYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDDVMLLDWVXXXXXXXXXXXLVDSDMEGNYIEEEVEQLIQVALLCTQGSPMERPKMSEAVRMLEGDGLAERWEEWQKEEMFRQDFNH-TPHPN-NTWIV-DSTSHIQPDELSGPR 605
            P YLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDDVMLLDWV           LVD D++GNY +EEVEQLIQVALLCTQ SPMERPKMSE VRMLEGDGLAERWEEWQKEEMFRQDFN+ T HP  + WI+ DSTS I+ +  SGPR
Sbjct:  461 PEYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKEKKLEALVDVDLQGNYKDEEVEQLIQVALLCTQSSPMERPKMSEVVRMLEGDGLAERWEEWQKEEMFRQDFNYPTHHPAVSGWIIGDSTSQIENEYPSGPR 615          
BLAST of GE213423 vs. ExPASy Swiss-Prot
Match: SERK1_ARATH (Somatic embryogenesis receptor kinase 1 OS=Arabidopsis thaliana GN=SERK1 PE=1 SV=2)

HSP 1 Score: 224.557 bits (571), Expect = 3.252e-58
Identity = 109/152 (71.71%), Postives = 126/152 (82.89%), Query Frame = -1
Query:  150 PRYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDDVMLLDWVXXXXXXXXXXXLVDSDMEGNYIEEEVEQLIQVALLCTQGSPMERPKMSEAVRMLEGDGLAERWEEWQKEEMFRQDFNHTPHPNNTWIVDSTSHIQPDELSGPR 605
            P YLSTGKSSEKTDVFGYG+MLLELITGQRAFDLARLANDDDVMLLDWV           LVD D++ NY E E+EQ+IQVALLCTQGSPMERPKMSE VRMLEGDGLAE+W+EWQK E+ R++ + +P+PN+ WI+DST ++   ELSGPR
Sbjct:  474 PEYLSTGKSSEKTDVFGYGIMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKEKKLEMLVDPDLQTNYEERELEQVIQVALLCTQGSPMERPKMSEVVRMLEGDGLAEKWDEWQKVEILREEIDLSPNPNSDWILDSTYNLHAVELSGPR 625          
BLAST of GE213423 vs. ExPASy Swiss-Prot
Match: SERK2_ARATH (Somatic embryogenesis receptor kinase 2 OS=Arabidopsis thaliana GN=SERK2 PE=1 SV=1)

HSP 1 Score: 224.172 bits (570), Expect = 4.247e-58
Identity = 110/152 (72.37%), Postives = 122/152 (80.26%), Query Frame = -1
Query:  150 PRYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDDVMLLDWVXXXXXXXXXXXLVDSDMEGNYIEEEVEQLIQVALLCTQGSPMERPKMSEAVRMLEGDGLAERWEEWQKEEMFRQDFNHTPHPNNTWIVDSTSHIQPDELSGPR 605
            P YLSTGKSSEKTDVFGYG+MLLELITGQRAFDLARLANDDDVMLLDWV           LVD D++ NY E EVEQLIQVALLCTQ SPMERPKMSE VRMLEGDGLAE+W+EWQK E+ RQ+   + HP + WI+DST ++   ELSGPR
Sbjct:  477 PEYLSTGKSSEKTDVFGYGIMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKEKKLEMLVDPDLQSNYTEAEVEQLIQVALLCTQSSPMERPKMSEVVRMLEGDGLAEKWDEWQKVEVLRQEVELSSHPTSDWILDSTDNLHAMELSGPR 628          
BLAST of GE213423 vs. ExPASy Swiss-Prot
Match: SERK5_ARATH (Somatic embryogenesis receptor kinase 5 OS=Arabidopsis thaliana GN=SERK5 PE=1 SV=2)

HSP 1 Score: 213.001 bits (541), Expect = 9.791e-55
Identity = 110/155 (70.97%), Postives = 121/155 (78.06%), Query Frame = -1
Query:  150 PRYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDDVMLLDWVXXXXXXXXXXXLVDSDMEGNYIEEEVEQLIQVALLCTQGSPMERPKMSEAVRMLEGDGLAERWEEWQKEEMFRQDFNHT--PHPNNTWIVD-STSHIQPDELSGPR 605
            P YLSTGKSSEKTDVFGYGVMLLELITGQ+AFDLARLANDDD+MLLDWV           LVD+++EG Y+E EVEQLIQ+ALLCTQ S MERPKMSE VRMLEGDGLAERWEEWQKEEM   DFN+   PH    W++  S S I+ D  SGPR
Sbjct:  447 PEYLSTGKSSEKTDVFGYGVMLLELITGQKAFDLARLANDDDIMLLDWVKEVLKEKKLESLVDAELEGKYVETEVEQLIQMALLCTQSSAMERPKMSEVVRMLEGDGLAERWEEWQKEEMPIHDFNYQAYPHAGTDWLIPYSNSLIENDYPSGPR 601          
BLAST of GE213423 vs. ExPASy Swiss-Prot
Match: SERK4_ARATH (Somatic embryogenesis receptor kinase 4 OS=Arabidopsis thaliana GN=SERK4 PE=1 SV=2)

HSP 1 Score: 213.001 bits (541), Expect = 9.791e-55
Identity = 110/155 (70.97%), Postives = 121/155 (78.06%), Query Frame = -1
Query:  150 PRYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDDVMLLDWVXXXXXXXXXXXLVDSDMEGNYIEEEVEQLIQVALLCTQGSPMERPKMSEAVRMLEGDGLAERWEEWQKEEMFRQDFNHT--PHPNNTWIVD-STSHIQPDELSGPR 605
            P YLSTGKSSEKTDVFGYGVMLLELITGQ+AFDLARLANDDD+MLLDWV           LVD+++EG Y+E EVEQLIQ+ALLCTQ S MERPKMSE VRMLEGDGLAERWEEWQKEEM   DFN+   PH    W++  S S I+ D  SGPR
Sbjct:  466 PEYLSTGKSSEKTDVFGYGVMLLELITGQKAFDLARLANDDDIMLLDWVKEVLKEKKLESLVDAELEGKYVETEVEQLIQMALLCTQSSAMERPKMSEVVRMLEGDGLAERWEEWQKEEMPIHDFNYQAYPHAGTDWLIPYSNSLIENDYPSGPR 620          
BLAST of GE213423 vs. ExPASy Swiss-Prot
Match: Y5129_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At5g10290 OS=Arabidopsis thaliana GN=At5g10290 PE=1 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 1.466e-42
Identity = 89/152 (58.55%), Postives = 106/152 (69.74%), Query Frame = -1
Query:  150 PRYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDDVMLLDWVXXXXXXXXXXXLVDSDMEGNYIEEEVEQLIQVALLCTQGSPMERPKMSEAVRMLEGDGLAERWEEWQKEEMFRQDFNHTPHPNNTWIVDSTSHIQPDELSGPR 605
            P YLSTGKSSE+TDVFGYG+MLLEL+TGQRA D +RL  +DDV+LLD V           +VD +++G YI+EEVE +IQVALLCTQGSP +RP MSE VRMLEG+GLAERWEEWQ  E+ R+           W  DS  +    ELSG R
Sbjct:  462 PEYLSTGKSSERTDVFGYGIMLLELVTGQRAIDFSRLEEEDDVLLLDHVKKLEREKRLGAIVDKNLDGEYIKEEVEMMIQVALLCTQGSPEDRPVMSEVVRMLEGEGLAERWEEWQNVEVTRRHEFERLQRRFDWGEDSMHNQDAIELSGGR 613          
BLAST of GE213423 vs. ExPASy Swiss-Prot
Match: Y2239_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At2g23950 OS=Arabidopsis thaliana GN=At2g23950 PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 8.637e-27
Identity = 66/135 (48.89%), Postives = 83/135 (61.48%), Query Frame = -1
Query:  201 PRYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDDVMLLDWVXXXXXXXXXXXLVDSDMEGNYIEEEVEQLIQVALLCTQGSPMERPKMSEAVRMLEGDGLAERWEEWQKEEMFRQDFNHTPHPNNTW 605
            P YLSTG+SSEKTDVFG+G++LLELITG RA +  +  +    ML +WV           LVD ++   Y   EV +++QVALLCTQ  P  RPKMSE V+MLEGDGLAERW           D +H  H N ++
Sbjct:  467 PEYLSTGQSSEKTDVFGFGILLLELITGMRALEFGKSVSQKGAML-EWVRKLHKEMKVEELVDRELGTTYDRIEVGEMLQVALLCTQFLPAHRPKMSEVVQMLEGDGLAERWAA-------SHDHSHFYHANMSY 593          
BLAST of GE213423 vs. ExPASy Swiss-Prot
Match: Y5457_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At5g45780 OS=Arabidopsis thaliana GN=At5g45780 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 3.515e-20
Identity = 59/153 (38.56%), Postives = 90/153 (58.82%), Query Frame = -1
Query:  150 PRYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDDVMLLDWVXXXXXXXXXXXLVDSDMEGNYIEEEVEQLIQVALLCTQGSPMERPKMSEAVRMLEGDGLAERWEEWQKEEMFRQDFNHT-PHPNNTWIVDSTSHIQPDELSGPR 605
            P YLSTG+SSEKTDVFG+GV++LELITG +  D          M+L WV           +VD D++G + +  +E+++++ALLCTQ  P  RP+MS+ +++LE  GL E+ E   +        N++  H   ++I+++       ELSGPR
Sbjct:  471 PEYLSTGQSSEKTDVFGFGVLILELITGHKMIDQGN-GQVRKGMILSWVRTLKAEKRFAEMVDRDLKGEFDDLVLEEVVELALLCTQPHPNLRPRMSQVLKVLE--GLVEQCEGGYEARAPSVSRNYSNGHEEQSFIIEAI------ELSGPR 614          
BLAST of GE213423 vs. ExPASy Swiss-Prot
Match: Y1534_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g53420 OS=Arabidopsis thaliana GN=At1g53420 PE=2 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 1.430e-13
Identity = 41/110 (37.27%), Postives = 60/110 (54.55%), Query Frame = -1
Query:  276 PRYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDDVMLLDWVXXXXXXXXXXXLVDSDMEGNYIEEEVEQLIQVALLCTQGSPMERPKMSEAVRMLEGDGLAE 605
            P Y   G  ++K DV+ +G++ LE++ G R+  + R  N+    L+DWV           LVD  +   Y  EE   +IQ+A++CT   P ERP MSE V+MLEG  + E
Sbjct:  795 PEYAMRGHLTDKADVYSFGIVALEIVHG-RSNKIERSKNNT-FYLIDWVEVLREKNNLLELVDPRLGSEYNREEAMTMIQIAIMCTSSEPCERPSMSEVVKMLEGKKMVE 902          
BLAST of GE213423 vs. ExPASy Swiss-Prot
Match: Y1765_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g07650 OS=Arabidopsis thaliana GN=At1g07650 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 5.435e-13
Identity = 39/110 (35.45%), Postives = 59/110 (53.64%), Query Frame = -1
Query:  291 LAWSRPRYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDDVMLLDWVXXXXXXXXXXXLVDSDMEGNYIEEEVEQLIQVALLCTQGSPMERPKMSEAVRMLEG 620
            + +  P Y   G  +EK DV+ +GV+ LE+++G+   +      +D V LLDW            LVD  +  +Y EEE   ++ VAL+CT  SP  RP MS+ V ++EG
Sbjct:  845 IGYMAPEYAMRGYLTEKADVYSFGVVALEIVSGKSNTNFR--PTEDFVYLLDWAYVLQERGSLLELVDPTLASDYSEEEAMLMLNVALMCTNASPTLRPTMSQVVSLIEG 952          
The following BLAST results are available for this feature:
BLAST of GE213423 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
BAK1_ARATH7.740e-6078.06BRASSINOSTEROID INSENSITIVE 1-associated receptor ... [more]
SERK1_ARATH3.252e-5871.71Somatic embryogenesis receptor kinase 1 OS=Arabido... [more]
SERK2_ARATH4.247e-5872.37Somatic embryogenesis receptor kinase 2 OS=Arabido... [more]
SERK5_ARATH9.791e-5570.97Somatic embryogenesis receptor kinase 5 OS=Arabido... [more]
SERK4_ARATH9.791e-5570.97Somatic embryogenesis receptor kinase 4 OS=Arabido... [more]
Y5129_ARATH1.466e-4258.55Probable LRR receptor-like serine/threonine-protei... [more]
Y2239_ARATH8.637e-2748.89Probable LRR receptor-like serine/threonine-protei... [more]
Y5457_ARATH3.515e-2038.56Probable LRR receptor-like serine/threonine-protei... [more]
Y1534_ARATH1.430e-1337.27Probable LRR receptor-like serine/threonine-protei... [more]
Y1765_ARATH5.435e-1335.45Probable LRR receptor-like serine/threonine-protei... [more]

Pages

back to top
Properties
Property NameValue
Genbank description297 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.