GE213402

Overview
NameGE213402
Unique NameGE213402
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9041 contig Csv1_Contig9041:519..1046. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of GE213402 vs. ExPASy Swiss-Prot
Match: SNRPA_XENLA (U1 small nuclear ribonucleoprotein A OS=Xenopus laevis GN=snrpa PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 9.826e-17
Identity = 44/91 (48.35%), Postives = 61/91 (67.03%), Query Frame = -3
Query:  221 PGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQ-QQLLITYAKK 490
            PG    + P +  PPN+ILF+ N+P +T  + L M F+QFPGFKEVR+V  +  IAFVE+ +E+QA  A +SLQ  KI Q   + I++AKK
Sbjct:  192 PGQMAPMQPISENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARESLQGFKITQSNSMKISFAKK 282          
BLAST of GE213402 vs. ExPASy Swiss-Prot
Match: SNRPA_PIG (U1 small nuclear ribonucleoprotein A OS=Sus scrofa GN=SNRPA PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 3.734e-16
Identity = 43/91 (47.25%), Postives = 59/91 (64.84%), Query Frame = -3
Query:  221 PGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLL-ITYAKK 490
            PG      P +  PPN+ILF+ N+P +T  + L M F+QFPGFKEVR+V  +  IAFVE+ +E+QA  A  +LQ  KI Q   + I++AKK
Sbjct:  192 PGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAKK 282          
BLAST of GE213402 vs. ExPASy Swiss-Prot
Match: SNRPA_MOUSE (U1 small nuclear ribonucleoprotein A OS=Mus musculus GN=Snrpa PE=2 SV=3)

HSP 1 Score: 84.3445 bits (207), Expect = 3.734e-16
Identity = 43/91 (47.25%), Postives = 59/91 (64.84%), Query Frame = -3
Query:  221 PGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLL-ITYAKK 490
            PG      P +  PPN+ILF+ N+P +T  + L M F+QFPGFKEVR+V  +  IAFVE+ +E+QA  A  +LQ  KI Q   + I++AKK
Sbjct:  197 PGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAKK 287          
BLAST of GE213402 vs. ExPASy Swiss-Prot
Match: SNRPA_HUMAN (U1 small nuclear ribonucleoprotein A OS=Homo sapiens GN=SNRPA PE=1 SV=3)

HSP 1 Score: 84.3445 bits (207), Expect = 3.734e-16
Identity = 43/91 (47.25%), Postives = 59/91 (64.84%), Query Frame = -3
Query:  221 PGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLL-ITYAKK 490
            PG      P +  PPN+ILF+ N+P +T  + L M F+QFPGFKEVR+V  +  IAFVE+ +E+QA  A  +LQ  KI Q   + I++AKK
Sbjct:  192 PGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAKK 282          
BLAST of GE213402 vs. ExPASy Swiss-Prot
Match: SNRPA_BOVIN (U1 small nuclear ribonucleoprotein A OS=Bos taurus GN=SNRPA PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 3.734e-16
Identity = 43/91 (47.25%), Postives = 59/91 (64.84%), Query Frame = -3
Query:  221 PGGAKSVIPEAPAPPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLL-ITYAKK 490
            PG      P +  PPN+ILF+ N+P +T  + L M F+QFPGFKEVR+V  +  IAFVE+ +E+QA  A  +LQ  KI Q   + I++AKK
Sbjct:  192 PGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAKK 282          
BLAST of GE213402 vs. ExPASy Swiss-Prot
Match: SNRPA_DROME (U1 small nuclear ribonucleoprotein A OS=Drosophila melanogaster GN=snf PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.853e-15
Identity = 44/93 (47.31%), Postives = 59/93 (63.44%), Query Frame = -3
Query:  221 PGGAKSVIPEAPA--PPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLL-ITYAKK 490
            P  A++  P A    PPN ILF+ N+P +T  M L M F+QFPGFKEVR+V  +  IAFVE+  E+Q+  A ++LQ  KI     + IT+AKK
Sbjct:  124 PSSAENSNPNAQTEQPPNQILFLTNLPEETNEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFTTELQSNAAKEALQGFKITPTHAMKITFAKK 216          
BLAST of GE213402 vs. ExPASy Swiss-Prot
Match: RU2B_MOUSE (U2 small nuclear ribonucleoprotein B'' OS=Mus musculus GN=Snrpb2 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 4.128e-15
Identity = 44/90 (48.89%), Postives = 57/90 (63.33%), Query Frame = -3
Query:  221 GAKSVIPEAPA-PPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLL-ITYAKK 484
            G  +  P+ P  PPN ILF+ N+P +T  M L M F+QFPGFKEVR+V  +  IAFVE+ ++ QA  A  +LQ  KI     + ITYAKK
Sbjct:  136 GTAAPNPQVPDYPPNYILFLNNLPEETNEMMLSMLFNQFPGFKEVRLVPGRHDIAFVEFENDGQAGAARDALQGFKITPSHAMKITYAKK 225          
BLAST of GE213402 vs. ExPASy Swiss-Prot
Match: RU2B_HUMAN (U2 small nuclear ribonucleoprotein B'' OS=Homo sapiens GN=SNRPB2 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 5.392e-15
Identity = 43/84 (51.19%), Postives = 55/84 (65.48%), Query Frame = -3
Query:  221 PEAPA-PPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLL-ITYAKK 466
            P+ P  PPN ILF+ N+P +T  M L M F+QFPGFKEVR+V  +  IAFVE+ ++ QA  A  +LQ  KI     + ITYAKK
Sbjct:  142 PQVPDYPPNYILFLNNLPEETNEMMLSMLFNQFPGFKEVRLVPGRHDIAFVEFENDGQAGAARDALQGFKITPSHAMKITYAKK 225          
BLAST of GE213402 vs. ExPASy Swiss-Prot
Match: RU2B_DICDI (U2 small nuclear ribonucleoprotein B'' OS=Dictyostelium discoideum GN=snrpb2 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 4.564e-14
Identity = 36/72 (50.00%), Postives = 50/72 (69.44%), Query Frame = -3
Query:  236 PPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLI 451
            PPN  LFV+N+P     M L M FSQF GFKEV MVE+K GIAF+E+ DE+++  AM +LQ  K+  ++ ++
Sbjct:  164 PPNKTLFVENLPDKCDSMMLSMLFSQFQGFKEVHMVESKKGIAFIEFEDEIKSGFAMTNLQHFKVTPEKPMV 235          
BLAST of GE213402 vs. ExPASy Swiss-Prot
Match: RU1A_SCHPO (U1 small nuclear ribonucleoprotein usp102 OS=Schizosaccharomyces pombe GN=usp102 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.017e-13
Identity = 36/86 (41.86%), Postives = 50/86 (58.14%), Query Frame = -3
Query:  221 KSVIPEAPAPPNNILFVQNVPHDTTPMALQMFFSQFPGFKEVRMVEAKPGIAFVEYGDEMQATVAMQSLQSLKIGQQQLLITYAKK 478
            KS I E   PPN +L +QN+P +     L   F  F GF+EVRMV  + GIAFVEY  + +ATVA      + +   Q+ +T+A+K
Sbjct:  162 KSTINEDLLPPNKVLLLQNIPQEVNADVLTQIFEAFSGFQEVRMVPGRRGIAFVEYDSDREATVAKNGTTGMSLSGNQIKVTFARK 247          
The following BLAST results are available for this feature:
BLAST of GE213402 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
SNRPA_XENLA9.826e-1748.35U1 small nuclear ribonucleoprotein A OS=Xenopus la... [more]
SNRPA_PIG3.734e-1647.25U1 small nuclear ribonucleoprotein A OS=Sus scrofa... [more]
SNRPA_MOUSE3.734e-1647.25U1 small nuclear ribonucleoprotein A OS=Mus muscul... [more]
SNRPA_HUMAN3.734e-1647.25U1 small nuclear ribonucleoprotein A OS=Homo sapie... [more]
SNRPA_BOVIN3.734e-1647.25U1 small nuclear ribonucleoprotein A OS=Bos taurus... [more]
SNRPA_DROME1.853e-1547.31U1 small nuclear ribonucleoprotein A OS=Drosophila... [more]
RU2B_MOUSE4.128e-1548.89U2 small nuclear ribonucleoprotein B'' OS=Mus musc... [more]
RU2B_HUMAN5.392e-1551.19U2 small nuclear ribonucleoprotein B'' OS=Homo sap... [more]
RU2B_DICDI4.564e-1450.00U2 small nuclear ribonucleoprotein B'' OS=Dictyost... [more]
RU1A_SCHPO1.017e-1341.86U1 small nuclear ribonucleoprotein usp102 OS=Schiz... [more]
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Properties
Property NameValue
Genbank description272 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.