GE213399

Overview
NameGE213399
Unique NameGE213399
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9707 contig Csv1_Contig9707:437..773. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of GE213399 vs. ExPASy Swiss-Prot
Match: AGL5_ARATH (Agamous-like MADS-box protein AGL5 OS=Arabidopsis thaliana GN=AGL5 PE=2 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 2.386e-41
Identity = 81/100 (81.00%), Postives = 95/100 (95.00%), Query Frame = 3
Query:   21 RYKKACADSSNPGSITEANTQFCQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYL 320
            RYKKAC+D+ NP +ITEANTQ+ QQEA+KLRRQIR+IQNLNRHILGE+L +LNFKELKNLE+RLEKGI RVRSKK+EML+AEIE+M+KREI+LQNDNMYL
Sbjct:   83 RYKKACSDAVNPPTITEANTQYYQQEASKLRRQIRDIQNLNRHILGESLGSLNFKELKNLESRLEKGISRVRSKKHEMLVAEIEYMQKREIELQNDNMYL 182          
BLAST of GE213399 vs. ExPASy Swiss-Prot
Match: AGL1_ARATH (Agamous-like MADS-box protein AGL1 OS=Arabidopsis thaliana GN=AGL1 PE=1 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 3.809e-39
Identity = 76/100 (76.00%), Postives = 93/100 (93.00%), Query Frame = 3
Query:   21 RYKKACADSSNPGSITEANTQFCQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYL 320
            RYKKAC+D+ NP S+TEANTQ+ QQEA+KLRRQIR+IQN NRHI+GE+L +LNFKELKNLE RLEKGI RVRSKKNE+L+AEIE+M+KRE++LQ++NMYL
Sbjct:   83 RYKKACSDAVNPPSVTEANTQYYQQEASKLRRQIRDIQNSNRHIVGESLGSLNFKELKNLEGRLEKGISRVRSKKNELLVAEIEYMQKREMELQHNNMYL 182          
BLAST of GE213399 vs. ExPASy Swiss-Prot
Match: AG_TOBAC (Floral homeotic protein AGAMOUS OS=Nicotiana tabacum GN=AG1 PE=2 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 9.088e-33
Identity = 65/100 (65.00%), Postives = 85/100 (85.00%), Query Frame = 3
Query:   21 RYKKACADSSNPGSITEANTQFCQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYL 320
            RYKKAC+DSSN GSI+EAN Q+ QQEA+KLR QI  +QN NR++LGE+L+ L+ ++LKNLE ++EKGI ++RSKKNE+L AEIE+M+KREI L N+N YL
Sbjct:   84 RYKKACSDSSNTGSISEANAQYYQQEASKLRAQIGNLQNQNRNMLGESLAALSLRDLKNLEQKIEKGISKIRSKKNELLFAEIEYMQKREIDLHNNNQYL 183          
BLAST of GE213399 vs. ExPASy Swiss-Prot
Match: AG_SOLLC (Floral homeotic protein AGAMOUS OS=Solanum lycopersicum GN=AG1 PE=2 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 1.550e-32
Identity = 64/100 (64.00%), Postives = 83/100 (83.00%), Query Frame = 3
Query:   21 RYKKACADSSNPGSITEANTQFCQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYL 320
            RYKKAC+DSSN GS++EAN Q+ QQEA+KLR QI  + N NR+++GEAL+ +  KELKNLE R+EKGI ++RSKKNE+L AEIE+M+KRE+ L N+N YL
Sbjct:   84 RYKKACSDSSNTGSVSEANAQYYQQEASKLRAQIGNLMNQNRNMMGEALAGMKLKELKNLEQRIEKGISKIRSKKNELLFAEIEYMQKREVDLHNNNQYL 183          
BLAST of GE213399 vs. ExPASy Swiss-Prot
Match: AG_PETHY (Floral homeotic protein AGAMOUS OS=Petunia hybrida GN=AG1 PE=2 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 2.024e-32
Identity = 64/100 (64.00%), Postives = 83/100 (83.00%), Query Frame = 3
Query:   21 RYKKACADSSNPGSITEANTQFCQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYL 320
            RYKKAC+DSSN GSI EAN Q+ QQEA+KLR QI  +QN NR+ LGE+L+ LN ++L+NLE ++EKGI ++R+KKNE+L AEIE+M+KREI L N+N YL
Sbjct:   84 RYKKACSDSSNTGSIAEANAQYYQQEASKLRAQIGNLQNQNRNFLGESLAALNLRDLRNLEQKIEKGISKIRAKKNELLFAEIEYMQKREIDLHNNNQYL 183          
BLAST of GE213399 vs. ExPASy Swiss-Prot
Match: AG_PANGI (Floral homeotic protein AGAMOUS OS=Panax ginseng GN=AG2 PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 3.232e-30
Identity = 61/100 (61.00%), Postives = 80/100 (80.00%), Query Frame = 3
Query:   21 RYKKACADSSNPGSITEANTQFCQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYL 320
            RYKKAC DS N  S++EAN QF QQEA+KLR++I  IQ  NR+++GE+L +L  ++LK LE +LEKGI R+RSKKNE+L AEIE+M+K+EI L N+N YL
Sbjct:   84 RYKKACTDSPNTSSVSEANAQFYQQEASKLRQEISSIQKNNRNMMGESLGSLTVRDLKGLETKLEKGISRIRSKKNELLFAEIEYMQKKEIDLHNNNQYL 183          
BLAST of GE213399 vs. ExPASy Swiss-Prot
Match: MAD58_ORYSJ (MADS-box transcription factor 58 OS=Oryza sativa subsp. japonica GN=MADS58 PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 1.358e-28
Identity = 56/100 (56.00%), Postives = 81/100 (81.00%), Query Frame = 3
Query:   21 RYKKACADSSNPGSITEANTQFCQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYL 320
            RYKKA +D+SN  ++ E N Q  QQEA KL++QI  +QN NR ++G+ ++T+N +ELK LE RL+KG+G++R++KNE+L AEIE+M++RE +LQNDNMYL
Sbjct:  110 RYKKANSDTSNASTVAEINAQHYQQEAAKLKQQITNLQNSNRTLVGDNITTMNHRELKQLEGRLDKGLGKIRARKNELLCAEIEYMQRRETELQNDNMYL 209          
BLAST of GE213399 vs. ExPASy Swiss-Prot
Match: AG_BRANA (Floral homeotic protein AGAMOUS OS=Brassica napus GN=AG1 PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 3.951e-28
Identity = 56/100 (56.00%), Postives = 78/100 (78.00%), Query Frame = 3
Query:   21 RYKKACADSSNPGSITEANTQFCQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYL 320
            RYKKA +D+SN GS+ E N Q+ QQE+ KLR+QI  IQN NR ++GE + +++ KEL+NLE RL++ + R+RSKKNE+L AEI++M+KRE+ L NDN  L
Sbjct:   84 RYKKAISDNSNTGSVAEINAQYYQQESAKLRQQIISIQNSNRQLMGETIGSMSPKELRNLEGRLDRSVNRIRSKKNELLFAEIDYMQKREVDLHNDNQLL 183          
BLAST of GE213399 vs. ExPASy Swiss-Prot
Match: AGL11_ARATH (Agamous-like MADS-box protein AGL11 OS=Arabidopsis thaliana GN=AGL11 PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 3.951e-28
Identity = 58/100 (58.00%), Postives = 81/100 (81.00%), Query Frame = 3
Query:   21 RYKKACADSSNPGSITEANTQFCQQEATKLRRQIREIQNLNRHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYL 320
            RYKKAC+DS+N  ++ E N  + QQE+ KLR+QI+ IQN NR+++G++LS+L+ KELK +E RLEK I R+RSKK+E+LL EIE  +KREI+L N+N+YL
Sbjct:   68 RYKKACSDSTNTSTVQEINAAYYQQESAKLRQQIQTIQNSNRNLMGDSLSSLSVKELKQVENRLEKAISRIRSKKHELLLVEIENAQKREIELDNENIYL 167          
BLAST of GE213399 vs. ExPASy Swiss-Prot
Match: MADS3_ORYSJ (MADS-box transcription factor 3 OS=Oryza sativa subsp. japonica GN=MADS3 PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 5.160e-28
Identity = 56/101 (55.45%), Postives = 84/101 (83.17%), Query Frame = 3
Query:   21 RYKKACADSSNPGSITEANTQFCQQEATKLRRQIREIQNLN-RHILGEALSTLNFKELKNLEARLEKGIGRVRSKKNEMLLAEIEFMEKREIQLQNDNMYL 320
            RYKKA +D+SN G++ E N Q  QQE++KLR+QI  +QN N R I+G++++T++ ++LK +E RLEKGI ++R++KNE+L AE+E+M+KRE++LQNDNMYL
Sbjct:   68 RYKKANSDTSNSGTVAEVNAQHYQQESSKLRQQISSLQNANSRTIVGDSINTMSLRDLKQVENRLEKGIAKIRARKNELLYAEVEYMQKREVELQNDNMYL 168          
The following BLAST results are available for this feature:
BLAST of GE213399 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
AGL5_ARATH2.386e-4181.00Agamous-like MADS-box protein AGL5 OS=Arabidopsis ... [more]
AGL1_ARATH3.809e-3976.00Agamous-like MADS-box protein AGL1 OS=Arabidopsis ... [more]
AG_TOBAC9.088e-3365.00Floral homeotic protein AGAMOUS OS=Nicotiana tabac... [more]
AG_SOLLC1.550e-3264.00Floral homeotic protein AGAMOUS OS=Solanum lycoper... [more]
AG_PETHY2.024e-3264.00Floral homeotic protein AGAMOUS OS=Petunia hybrida... [more]
AG_PANGI3.232e-3061.00Floral homeotic protein AGAMOUS OS=Panax ginseng G... [more]
MAD58_ORYSJ1.358e-2856.00MADS-box transcription factor 58 OS=Oryza sativa s... [more]
AG_BRANA3.951e-2856.00Floral homeotic protein AGAMOUS OS=Brassica napus ... [more]
AGL11_ARATH3.951e-2858.00Agamous-like MADS-box protein AGL11 OS=Arabidopsis... [more]
MADS3_ORYSJ5.160e-2855.45MADS-box transcription factor 3 OS=Oryza sativa su... [more]

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Properties
Property NameValue
Genbank description269 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.