GE213347

Overview
NameGE213347
Unique NameGE213347
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8039 contig Csv1_Contig8039:603..873. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of GE213347 vs. ExPASy Swiss-Prot
Match: 2AAB_ARATH (Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform OS=Arabidopsis thaliana GN=PP2AA2 PE=1 SV=2)

HSP 1 Score: 108.612 bits (270), Expect = 1.010e-23
Identity = 55/62 (88.71%), Postives = 60/62 (96.77%), Query Frame = -2
Query:   67 QVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVMMSS 252
            +VPNIKFNVAKVLQSLIPIVDQS+VEKTIRP LVEL+EDPDVDVRFFA QA+QSID+VMMSS
Sbjct:  526 RVPNIKFNVAKVLQSLIPIVDQSVVEKTIRPGLVELSEDPDVDVRFFANQALQSIDNVMMSS 587          
BLAST of GE213347 vs. ExPASy Swiss-Prot
Match: 2AAA_PEA (Protein phosphatase PP2A regulatory subunit A (Fragment) OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 8.549e-23
Identity = 52/62 (83.87%), Postives = 58/62 (93.55%), Query Frame = -2
Query:   67 QVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVMMSS 252
            +VPNIKFNVAKVLQSLIPIVD+S+VE TIRPCLVEL+EDPDVDVRFFA+QA+QS D V MSS
Sbjct:  334 RVPNIKFNVAKVLQSLIPIVDESVVESTIRPCLVELSEDPDVDVRFFASQALQSSDQVKMSS 395          
BLAST of GE213347 vs. ExPASy Swiss-Prot
Match: 2AAG_ARATH (Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A gamma isoform OS=Arabidopsis thaliana GN=PP2AA3 PE=1 SV=2)

HSP 1 Score: 104.76 bits (260), Expect = 1.458e-22
Identity = 50/62 (80.65%), Postives = 59/62 (95.16%), Query Frame = -2
Query:   67 QVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVMMSS 252
            +VPNIKFNVAK++QSLIPIVDQ++VE  IRPCLVEL+EDPDVDVR+FA QA+QSID+VMMSS
Sbjct:  526 RVPNIKFNVAKMMQSLIPIVDQAVVENMIRPCLVELSEDPDVDVRYFANQALQSIDNVMMSS 587          
BLAST of GE213347 vs. ExPASy Swiss-Prot
Match: 2AAA_ARATH (Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform OS=Arabidopsis thaliana GN=PP2AA1 PE=1 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.155e-19
Identity = 46/61 (75.41%), Postives = 54/61 (88.52%), Query Frame = -2
Query:   85 ERPPGQVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSID 267
            E    +VPNIKFNVAK+LQSLIPIVDQS+V+KTIR CLV+L+EDPDVDVR+FA QA+ SID
Sbjct:  521 EASKDRVPNIKFNVAKLLQSLIPIVDQSVVDKTIRQCLVDLSEDPDVDVRYFANQALNSID 581          
BLAST of GE213347 vs. ExPASy Swiss-Prot
Match: 2AAA_DICDI (Serine/threonine-protein phosphatase 2A regulatory subunit pppA OS=Dictyostelium discoideum GN=pppA PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.370e-11
Identity = 28/53 (52.83%), Postives = 44/53 (83.02%), Query Frame = -2
Query:   94 QVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQ 252
            +VPNI+FNVAK  Q++IP++D ++V+  ++P LV+L ED D DV+F+A+QA+Q
Sbjct:  530 KVPNIRFNVAKTFQTIIPLLDSTIVQSRVKPLLVKLHEDTDKDVKFYASQALQ 582          
The following BLAST results are available for this feature:
BLAST of GE213347 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
2AAB_ARATH1.010e-2388.71Serine/threonine-protein phosphatase 2A 65 kDa reg... [more]
2AAA_PEA8.549e-2383.87Protein phosphatase PP2A regulatory subunit A (Fra... [more]
2AAG_ARATH1.458e-2280.65Serine/threonine-protein phosphatase 2A 65 kDa reg... [more]
2AAA_ARATH1.155e-1975.41Serine/threonine-protein phosphatase 2A 65 kDa reg... [more]
2AAA_DICDI3.370e-1152.83Serine/threonine-protein phosphatase 2A regulatory... [more]
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Properties
Property NameValue
Genbank description210 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.