GE213321

Overview
NameGE213321
Unique NameGE213321
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5935 contig Csv1_Contig5935:333..642. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of GE213321 vs. ExPASy Swiss-Prot
Match: LOXC2_ORYSJ (Probable lipoxygenase 8, chloroplastic OS=Oryza sativa subsp. japonica GN=CM-LOX2 PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 6.696e-28
Identity = 56/88 (63.64%), Postives = 71/88 (80.68%), Query Frame = 2
Query:   26 ETLAGLNPYGISLVADWPLKSTLDPETYGPTESAITKELIEKEIGGSMTVEEAIKQKKLFIIDYHDALLPYVEKVRQIKDTTLYGSRT 289
            ETLAG+NPY I LV ++PLKS LDP  YGP ESAIT +L+E+++   MTVEEAI QK+LF++D+HD  LPYV K+R +K TT+YGSRT
Sbjct:  447 ETLAGINPYAIELVREFPLKSKLDPAVYGPAESAITADLLEEQMRRVMTVEEAISQKRLFMLDFHDLFLPYVHKIRSLKHTTMYGSRT 534          
BLAST of GE213321 vs. ExPASy Swiss-Prot
Match: LOX2_ARATH (Lipoxygenase 2, chloroplastic OS=Arabidopsis thaliana GN=LOX2 PE=1 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 8.746e-28
Identity = 55/88 (62.50%), Postives = 70/88 (79.55%), Query Frame = 2
Query:   26 ETLAGLNPYGISLVADWPLKSTLDPETYGPTESAITKELIEKEIGGSMTVEEAIKQKKLFIIDYHDALLPYVEKVRQIKDTTLYGSRT 289
            +TLAGLNPY I LV +WPL S LDP  YG   S IT E++E+E+ G+MTV+EA+K K+LF++DYHD LLPYV KVR++ +TTLY SRT
Sbjct:  403 QTLAGLNPYSIQLVEEWPLISKLDPAVYGDPTSLITWEIVEREVKGNMTVDEALKNKRLFVLDYHDLLLPYVNKVRELNNTTLYASRT 490          
BLAST of GE213321 vs. ExPASy Swiss-Prot
Match: LOXC1_ORYSJ (Lipoxygenase 7, chloroplastic OS=Oryza sativa subsp. japonica GN=CM-LOX1 PE=2 SV=2)

HSP 1 Score: 120.168 bits (300), Expect = 3.323e-27
Identity = 55/88 (62.50%), Postives = 70/88 (79.55%), Query Frame = 2
Query:   26 ETLAGLNPYGISLVADWPLKSTLDPETYGPTESAITKELIEKEIGGSMTVEEAIKQKKLFIIDYHDALLPYVEKVRQIKDTTLYGSRT 289
            ETLAG+NPY I LV ++PLKS LDP  YGP ESAIT +L+E+++   MTVEEAI QK+LF++D+HD  LPYV K+R +  TT+YGSRT
Sbjct:  430 ETLAGINPYAIELVREFPLKSKLDPAVYGPAESAITADLLEEQMRRVMTVEEAISQKRLFMLDFHDLFLPYVHKIRSLDHTTMYGSRT 517          
BLAST of GE213321 vs. ExPASy Swiss-Prot
Match: LOX23_HORVU (Lipoxygenase 2.3, chloroplastic OS=Hordeum vulgare GN=LOX2.3 PE=1 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 3.674e-26
Identity = 52/88 (59.09%), Postives = 71/88 (80.68%), Query Frame = 2
Query:   26 ETLAGLNPYGISLVADWPLKSTLDPETYGPTESAITKELIEKEIGGSMTVEEAIKQKKLFIIDYHDALLPYVEKVRQIKDTTLYGSRT 289
            +TLAGLNP  I  + ++P+ S LDP  YGP ESA++KE++EK + G MTVEEA+++K+LF++DYHD  LPYV +VR++ DTTLYGSRT
Sbjct:  405 QTLAGLNPICIRRLTEFPIVSKLDPAVYGPAESALSKEILEKMMNGRMTVEEAMEKKRLFLLDYHDVFLPYVHRVRELPDTTLYGSRT 492          
BLAST of GE213321 vs. ExPASy Swiss-Prot
Match: LOX21_HORVU (Lipoxygenase 2.1, chloroplastic OS=Hordeum vulgare GN=LOX2.1 PE=1 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 2.382e-25
Identity = 51/87 (58.62%), Postives = 69/87 (79.31%), Query Frame = 2
Query:   26 ETLAGLNPYGISLVADWPLKSTLDPETYGPTESAITKELIEKEIGGSMTVEEAIKQKKLFIIDYHDALLPYVEKVRQIKDTTLYGSR 286
            +T+AG+NP  I LV ++P+KS LD  TYGP +S ITKE++E++I   MT +EA++ KKLF++DYHD LLPYV KVR++  TTLYGSR
Sbjct:  434 QTIAGMNPMSIQLVTEFPIKSNLDEATYGPADSLITKEVVEEQIRRVMTADEAVQNKKLFMLDYHDLLLPYVHKVRKLDGTTLYGSR 520          
BLAST of GE213321 vs. ExPASy Swiss-Prot
Match: LOX22_HORVU (Lipoxygenase 2.2, chloroplastic OS=Hordeum vulgare GN=LOX2.2 PE=1 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 4.063e-25
Identity = 57/99 (57.58%), Postives = 71/99 (71.72%), Query Frame = 2
Query:    2 LAWSRPR*---ETLAGLNPYGISLVADWPLKSTLDPETYGPTESAITKELIEKEIGGSMTVEEAIKQKKLFIIDYHDALLPYVEKVRQIKDTTLYGSRT 289
            LAW R      +TLAG+NP  I LV + P+ S LD   YGP +S ITKELIEK+I   MT EEA+ QKKLF++DYHD LLPYV +VR++ + T+YGSRT
Sbjct:  422 LAWFRDEEFARQTLAGMNPLSIQLVTELPIVSKLDELKYGPADSLITKELIEKQINRIMTAEEAVAQKKLFMLDYHDLLLPYVHRVRKLDNKTMYGSRT 520          
BLAST of GE213321 vs. ExPASy Swiss-Prot
Match: LOX6_ARATH (Lipoxygenase 6, choloroplastic OS=Arabidopsis thaliana GN=LOX6 PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 7.421e-19
Identity = 43/91 (47.25%), Postives = 65/91 (71.43%), Query Frame = 2
Query:   26 ETLAGLNPYGISLVADWPLKSTLDPETYGPTESAITKELIEKEIGG-SMTVEEAIKQKKLFIIDYHDALLPYVEKVRQIKD--TTLYGSRT 289
            + LAG+NP  I L+ + P++S LDP  YGP ES +T+E+I +E+     T+E+A+++K+LF++DYHD LLP+VEK+  IK+     Y SRT
Sbjct:  422 QALAGVNPVNIELLKELPIRSNLDPALYGPQESVLTEEIIAREVEHYGTTIEKALEEKRLFLVDYHDILLPFVEKINSIKEDPRKTYASRT 512          
BLAST of GE213321 vs. ExPASy Swiss-Prot
Match: LOX4_SOYBN (Lipoxygenase-4 OS=Glycine max GN=LOX1.5 PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.447e-16
Identity = 42/88 (47.73%), Postives = 59/88 (67.05%), Query Frame = 2
Query:   26 ETLAGLNPYGISLVADWPLKSTLDPETYGPTESAITKELIEKEIGGSMTVEEAIKQKKLFIIDYHDALLPYVEKVRQIKDTTLYGSRT 289
            ET+AGLNP  I ++ ++PL S LD + YG     I KE +E  +GG +TVE+AI+ KKLFI+D+HD L+PY+ K+     T  Y +RT
Sbjct:  362 ETIAGLNPNVIKIIEEFPLSSKLDTQAYGDHTCIIAKEHLEPNLGG-LTVEQAIQNKKLFILDHHDYLIPYLRKI-NANTTKTYATRT 447          
BLAST of GE213321 vs. ExPASy Swiss-Prot
Match: LOXX_SOYBN (Seed lipoxygenase OS=Glycine max GN=LOX1.4 PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 5.880e-16
Identity = 40/88 (45.45%), Postives = 58/88 (65.91%), Query Frame = 2
Query:   26 ETLAGLNPYGISLVADWPLKSTLDPETYGPTESAITKELIEKEIGGSMTVEEAIKQKKLFIIDYHDALLPYVEKVRQIKDTTLYGSRT 289
            E +AG+NP  I  + ++P KSTLDP  YG   S ITKE +E  +GG +TVEEA+  ++LFI+DY DA +PY+ ++  +     Y +RT
Sbjct:  373 EVIAGVNPNVIRRLQEFPPKSTLDPTLYGDQTSTITKEQLEINMGG-VTVEEALSTQRLFILDYQDAFIPYLTRINSLPTAKAYATRT 459          
BLAST of GE213321 vs. ExPASy Swiss-Prot
Match: LOX1_ARATH (Lipoxygenase 1 OS=Arabidopsis thaliana GN=LOX1 PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.003e-15
Identity = 44/88 (50.00%), Postives = 60/88 (68.18%), Query Frame = 2
Query:   26 ETLAGLNPYGISLVADWPLKSTLDPETYGPTESAITKELIEKEIGGSMTVEEAIKQKKLFIIDYHDALLPYVEKVRQIKDTTLYGSRT 289
            E LAGLNP  I L+ ++P KS LD E+YG   S ITK  IE  + G +TVEEA+++++LFI+D+HD L+PY+ +V     T  Y SRT
Sbjct:  369 EMLAGLNPVVIQLLKEFPPKSKLDSESYGNQNSTITKSHIEHNLDG-LTVEEALEKERLFILDHHDTLMPYLGRV-NTTTTKTYASRT 454          
The following BLAST results are available for this feature:
BLAST of GE213321 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
LOXC2_ORYSJ6.696e-2863.64Probable lipoxygenase 8, chloroplastic OS=Oryza sa... [more]
LOX2_ARATH8.746e-2862.50Lipoxygenase 2, chloroplastic OS=Arabidopsis thali... [more]
LOXC1_ORYSJ3.323e-2762.50Lipoxygenase 7, chloroplastic OS=Oryza sativa subs... [more]
LOX23_HORVU3.674e-2659.09Lipoxygenase 2.3, chloroplastic OS=Hordeum vulgare... [more]
LOX21_HORVU2.382e-2558.62Lipoxygenase 2.1, chloroplastic OS=Hordeum vulgare... [more]
LOX22_HORVU4.063e-2557.58Lipoxygenase 2.2, chloroplastic OS=Hordeum vulgare... [more]
LOX6_ARATH7.421e-1947.25Lipoxygenase 6, choloroplastic OS=Arabidopsis thal... [more]
LOX4_SOYBN3.447e-1647.73Lipoxygenase-4 OS=Glycine max GN=LOX1.5 PE=1 SV=1[more]
LOXX_SOYBN5.880e-1645.45Seed lipoxygenase OS=Glycine max GN=LOX1.4 PE=1 SV... [more]
LOX1_ARATH1.003e-1550.00Lipoxygenase 1 OS=Arabidopsis thaliana GN=LOX1 PE=... [more]

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Properties
Property NameValue
Genbank description178 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.