GE213278

Overview
NameGE213278
Unique NameGE213278
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13698 contig Csv1_Contig13698:1..286. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of GE213278 vs. ExPASy Swiss-Prot
Match: MEP1_SOYBN (Metalloendoproteinase 1 OS=Glycine max PE=1 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 9.030e-17
Identity = 40/75 (53.33%), Postives = 54/75 (72.00%), Query Frame = -3 
Query:   39 YFHYFGYIPDLPSNFTDDFDDMLESAVKTYQKNFNLEPTGQLDSQTMQHILRPRCGNPDIVNGTTTMNSGKPTSY 263
            YFH+ GYIP+ P +F D+FDD L SA+KTYQKN+NL  TG+ D  T++ I+ PRCG PDI+     +N+ K TS+
Sbjct:   60 YFHHLGYIPNAP-HFDDNFDDTLVSAIKTYQKNYNLNVTGKFDINTLKQIMTPRCGVPDII-----INTNKTTSF 128
The following BLAST results are available for this feature:
BLAST of GE213278 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
MEP1_SOYBN9.030e-1753.33Metalloendoproteinase 1 OS=Glycine max PE=1 SV=2[more]
back to top
Properties
Property NameValue
Genbank description130 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.