FC871696

Overview
NameFC871696
Unique NameFC871696
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length807
Libraries
Library NameType
AbsCFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig614 contig Csv1_Contig614:21..827. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC871696 vs. ExPASy Swiss-Prot
Match: TTC38_PONAB (Tetratricopeptide repeat protein 38 OS=Pongo abelii GN=TTC38 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.152e-11
Identity = 37/129 (28.68%), Postives = 66/129 (51.16%), Query Frame = 3 
Query:  429 KLLKEFPRDLLSLKRTQILCFYMGRPDLCFDIIHQVLPYNQQE----DFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEEXXXXXXXXXXFMYTHNWWHVAL 803
            ++L++ P D+L+LK +    FY+G  +   D + ++ P+   +     ++ GI +F L+E      AE+ AK+ L IN  D WS H + H+ +     K+ ++FM+            +  HN+WH AL
Sbjct:  133 QILQDHPTDMLALKFSHDAYFYLGYQEQMRDSVARIYPFWTPDIPLSSYVKGIYSFGLMETNFYDQAEKLAKEALSINPTDAWSVHTVAHIHEMKAEIKDGLEFMQH-SETLWKDSDMLACHNYWHWAL 260
[Close]
BLAST of FC871696 vs. ExPASy Swiss-Prot
Match: TTC38_HUMAN (Tetratricopeptide repeat protein 38 OS=Homo sapiens GN=TTC38 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.152e-11
Identity = 37/129 (28.68%), Postives = 66/129 (51.16%), Query Frame = 3 
Query:  429 KLLKEFPRDLLSLKRTQILCFYMGRPDLCFDIIHQVLPYNQQE----DFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEEXXXXXXXXXXFMYTHNWWHVAL 803
            ++L++ P D+L+LK +    FY+G  +   D + ++ P+   +     ++ GI +F L+E      AE+ AK+ L IN  D WS H + H+ +     K+ ++FM+            +  HN+WH AL
Sbjct:  133 QILQDHPTDMLALKFSHDAYFYLGYQEQMRDSVARIYPFWTPDIPLSSYVKGIYSFGLMETNFYDQAEKLAKEALSINPTDAWSVHTVAHIHEMKAEIKDGLEFMQH-SETFWKDSDMLACHNYWHWAL 260
[Close]
BLAST of FC871696 vs. ExPASy Swiss-Prot
Match: TTC38_MOUSE (Tetratricopeptide repeat protein 38 OS=Mus musculus GN=Ttc38 PE=2 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 8.177e-11
Identity = 37/129 (28.68%), Postives = 66/129 (51.16%), Query Frame = 3 
Query:  429 KLLKEFPRDLLSLKRTQILCFYMGRPDLCFDIIHQVLPYNQQE----DFIFGILAFSLLELGQMSDAEEAAKKGLKINKHDCWSQHALCHVLQHDCCFKEAVQFMEEXXXXXXXXXXFMYTHNWWHVAL 803
            ++L++ P D+L+LK +    FY+G  +   D + +V P+   +     ++ GI +F L+E      A++ AK+ L I   D WS H + HV +     K+ ++FM++           +  HN+WH AL
Sbjct:  129 QILRDHPTDMLALKFSHDAYFYLGYQEQMRDSVARVYPFWTPDIPLNSYVKGIYSFGLMETNFYDQAQKLAKEALSIEPTDAWSVHTVAHVHEMRAEIKDGLEFMQQ-SEGHWKDSDMLACHNYWHWAL 256
The following BLAST results are available for this feature:
BLAST of FC871696 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
TTC38_PONAB2.152e-1128.68Tetratricopeptide repeat protein 38 OS=Pongo abeli... [more]
TTC38_HUMAN2.152e-1128.68Tetratricopeptide repeat protein 38 OS=Homo sapien... [more]
TTC38_MOUSE8.177e-1128.68Tetratricopeptide repeat protein 38 OS=Mus musculu... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAK1CC04FM2 AbsCFruit1 Citrus sinensis cDNA clone KN0AAK1CC04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC871696 ID=FC871696; Name=FC871696; organism=Citrus sinensis; type=EST; length=807bp
CTCAGTTGGTACTATCTCATGCCGAAGCCGCGACCGACTAGTGTTACATT
TACATAGAGCGAGGGAGAGGCAAAAACTCAGAGAGAAAAATGGAAGGAGT
GAAATTAGAGAGATGGGGTTACGAAGTTAAGACATCCTCTGATTCTTGCA
TCTCTGCCATCAACGCCTACTATCACCAGGTGCTTAGTTATGGGAGAGAG
AGGCGTGTGATATTAGAAGCGGCTGAGCATGACAAAGATTGTGTTTTGGC
TAATATTTTGGCTGCTCAGTTCCTATCATCCAGTGATTCTTTTAAAGCTT
CTTTGCATATTCGGGCAGCTAAGTCTCGTCTGGATGAAGCTACAACATAC
GAGAAGGCAGTTTTCTATGCTGTCTGTTATTTGATTTCTGATGACAGAGA
CGATGAAGTGGCCGTTGCGTCACACTCTAAGCTTCTGAAAGAGTTTCCAA
GAGATCTGCTTTCTCTGAAAAGGACCCAAATACTCTGCTTCTACATGGGC
CGCCCTGATCTGTGTTTCGATATTATTCACCAGGTTCTGCCCTATAATCA
ACAAGAAGATTTCATATTTGGCATTCTTGCGTTTTCGTTGCTAGAGCTTG
GACAGATGTCAGATGCTGAGGAAGCTGCTAAAAAGGGACTTAAAATCAAC
AAACATGACTGCTGGTCTCAACATGCTCTGTGCCATGTTCTCCAGCATGA
TTGTTGTTTTAAAGAAGCAGTACAGTTCATGGAAGAATGCTCGTCCACAT
GGAGTTCTTGTTCATCATTCATGTATACACACAATTGGTGGCACGTGGCG
CTCTGTT
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