FC871685

Overview
NameFC871685
Unique NameFC871685
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length711
Libraries
Library NameType
AbsCFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12347 contig Csv1_Contig12347:80..790. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC871685 vs. ExPASy Swiss-Prot
Match: LEPA_CYAP7 (GTP-binding protein lepA OS=Cyanothece sp. (strain PCC 7424) GN=lepA PE=3 SV=1)

HSP 1 Score: 290.426 bits (742), Expect = 6.262e-78
Identity = 147/177 (83.05%), Postives = 162/177 (91.53%), Query Frame = 1
Query:  184 VPASNIRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFEN-EPFCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPGAEPSRVAREIEEVIGLDCTNAILCSAKEGIGINEILNA 711
            VP S IRNFSIIAHIDHGKSTLAD++LQMTGTV+ R+MKEQFLDN+DLERERGITIKLQAARM Y  ++ + + LNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPGAEP RVA+EIEE++GLDC+  I  SAKEGIG+NEIL +
Sbjct:    4 VPVSRIRNFSIIAHIDHGKSTLADRMLQMTGTVEDRKMKEQFLDNLDLERERGITIKLQAARMNYTAQDGQHYVLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPGAEPERVAQEIEEIVGLDCSGIIKASAKEGIGVNEILES 180          
BLAST of FC871685 vs. ExPASy Swiss-Prot
Match: LEPA_THEEB (GTP-binding protein lepA OS=Thermosynechococcus elongatus (strain BP-1) GN=lepA PE=3 SV=1)

HSP 1 Score: 289.271 bits (739), Expect = 1.395e-77
Identity = 149/177 (84.18%), Postives = 160/177 (90.40%), Query Frame = 1
Query:  184 VPASNIRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVF-ENEPFCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPGAEPSRVAREIEEVIGLDCTNAILCSAKEGIGINEILNA 711
            VP S+IRNFSIIAHIDHGKSTLAD+LLQ+TGTV  REMKEQFLDNM+LERERGITIKLQAARM Y   + E + LNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE+NLEIIPVLNKIDLPGAEP RV  EIEE+IGLDC+ A+L SAKEGIGI EIL +
Sbjct:    4 VPVSHIRNFSIIAHIDHGKSTLADRLLQLTGTVDPREMKEQFLDNMELERERGITIKLQAARMTYTSRDGETYILNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALEHNLEIIPVLNKIDLPGAEPDRVKAEIEEIIGLDCSQAVLASAKEGIGIEEILES 180          
BLAST of FC871685 vs. ExPASy Swiss-Prot
Match: LEPA_ANASP (GTP-binding protein lepA OS=Anabaena sp. (strain PCC 7120) GN=lepA PE=3 SV=1)

HSP 1 Score: 288.886 bits (738), Expect = 1.822e-77
Identity = 150/177 (84.75%), Postives = 159/177 (89.83%), Query Frame = 1
Query:  184 VPASNIRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRY-VFENEPFCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPGAEPSRVAREIEEVIGLDCTNAILCSAKEGIGINEILNA 711
            VPA  IRNF IIAHIDHGKSTLAD+LLQ TGTV +R+MKEQFLDNMDLERERGITIKLQAARM Y   + + + LNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE+NLEIIPVLNKIDLPGAEP RV  EIEE+IGLDC+ AIL SAKEGIGINEIL A
Sbjct:    4 VPAVRIRNFCIIAHIDHGKSTLADRLLQATGTVDERQMKEQFLDNMDLERERGITIKLQAARMNYQAKDGQQYVLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALEHNLEIIPVLNKIDLPGAEPDRVVGEIEEIIGLDCSGAILASAKEGIGINEILEA 180          
BLAST of FC871685 vs. ExPASy Swiss-Prot
Match: LEPA_TRIEI (GTP-binding protein lepA OS=Trichodesmium erythraeum (strain IMS101) GN=lepA PE=3 SV=1)

HSP 1 Score: 287.345 bits (734), Expect = 5.301e-77
Identity = 150/180 (83.33%), Postives = 160/180 (88.89%), Query Frame = 1
Query:  175 LLKVPASNIRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRY-VFENEPFCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPGAEPSRVAREIEEVIGLDCTNAILCSAKEGIGINEILNA 711
            + KVP S+IRNFSIIAHIDHGKSTLAD+LLQ TGTV  REMKEQFLD MDLERERGITIKLQAARM Y   + E + LNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE++LEIIPVLNKIDLPGAEP RV  EIEE+IGLDC+ AIL SAKEGIGI EIL +
Sbjct:    1 MTKVPVSHIRNFSIIAHIDHGKSTLADRLLQATGTVADREMKEQFLDTMDLERERGITIKLQAARMNYHAKDGEEYVLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALEHDLEIIPVLNKIDLPGAEPERVKEEIEEIIGLDCSGAILASAKEGIGIPEILES 180          
BLAST of FC871685 vs. ExPASy Swiss-Prot
Match: LEPA_MICAN (GTP-binding protein lepA OS=Microcystis aeruginosa (strain NIES-843) GN=lepA PE=3 SV=1)

HSP 1 Score: 287.345 bits (734), Expect = 5.301e-77
Identity = 149/177 (84.18%), Postives = 160/177 (90.40%), Query Frame = 1
Query:  184 VPASNIRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFEN-EPFCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPGAEPSRVAREIEEVIGLDCTNAILCSAKEGIGINEILNA 711
            VP S IRNFSIIAHIDHGKSTLAD+LLQ+TGTV +REMKEQFLDNMDLERERGITIKLQAARM Y  ++ + + LNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLP AEP RVA EIEEV+GLDC+ AI  SAK GIGIN+IL +
Sbjct:    4 VPVSRIRNFSIIAHIDHGKSTLADRLLQITGTVAQREMKEQFLDNMDLERERGITIKLQAARMDYTAKDGQKYVLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPSAEPERVAAEIEEVVGLDCSEAIRASAKAGIGINDILES 180          
BLAST of FC871685 vs. ExPASy Swiss-Prot
Match: LEPA_CYAP8 (GTP-binding protein lepA OS=Cyanothece sp. (strain PCC 8801) GN=lepA PE=3 SV=1)

HSP 1 Score: 287.345 bits (734), Expect = 5.301e-77
Identity = 147/177 (83.05%), Postives = 161/177 (90.96%), Query Frame = 1
Query:  184 VPASNIRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFEN-EPFCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPGAEPSRVAREIEEVIGLDCTNAILCSAKEGIGINEILNA 711
            VP S IRNFSIIAHIDHGKSTLAD+LLQ TGTVQ+R+MKEQFLDNMDLERERGITIKLQAARM Y  ++ E + LNLIDTPGHVDFSYEVSRSLAACEGALLVVD+SQGVEAQTLANVYLAL+NNLEIIP+LNKIDLPG+EP RVA EIEEV+GLDC+N I  SAK GIGI+EIL +
Sbjct:    4 VPVSRIRNFSIIAHIDHGKSTLADRLLQDTGTVQQRQMKEQFLDNMDLERERGITIKLQAARMNYTAKDGEKYVLNLIDTPGHVDFSYEVSRSLAACEGALLVVDSSQGVEAQTLANVYLALDNNLEIIPILNKIDLPGSEPERVANEIEEVVGLDCSNIIKASAKAGIGIDEILES 180          
BLAST of FC871685 vs. ExPASy Swiss-Prot
Match: LEPA_CYAP4 (GTP-binding protein lepA OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=lepA PE=3 SV=1)

HSP 1 Score: 286.574 bits (732), Expect = 9.042e-77
Identity = 148/180 (82.22%), Postives = 161/180 (89.44%), Query Frame = 1
Query:  175 LLKVPASNIRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFEN-EPFCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPGAEPSRVAREIEEVIGLDCTNAILCSAKEGIGINEILNA 711
            + + P S IRNFSIIAHIDHGKSTLAD+LLQ TGTV  R+MKEQFLDNMDLERERGITIKLQAARM Y  E+ E + LNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE+NLEIIPVLNKIDLPGAEP RV +EIEE+IGLDC+ A++ SAKEGIGI EIL +
Sbjct:    1 MTEAPVSRIRNFSIIAHIDHGKSTLADRLLQTTGTVAARDMKEQFLDNMDLERERGITIKLQAARMNYRGEDGEEYVLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALEHNLEIIPVLNKIDLPGAEPERVKQEIEEIIGLDCSGAVMASAKEGIGIAEILES 180          
BLAST of FC871685 vs. ExPASy Swiss-Prot
Match: LEPA_ANAVT (GTP-binding protein lepA OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=lepA PE=3 SV=1)

HSP 1 Score: 286.574 bits (732), Expect = 9.042e-77
Identity = 149/177 (84.18%), Postives = 159/177 (89.83%), Query Frame = 1
Query:  184 VPASNIRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRY-VFENEPFCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPGAEPSRVAREIEEVIGLDCTNAILCSAKEGIGINEILNA 711
            VPA  IRNF IIAHIDHGKSTLAD+LLQ TGTV +R+MKEQFLDNMDLERERGITIKLQAARM Y   + + + LNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE+NLEIIPVLNKIDLPGAEP RV  EIEE+IGLDC+ AIL SAKEGIGI+EIL A
Sbjct:    4 VPAVRIRNFCIIAHIDHGKSTLADRLLQATGTVDERQMKEQFLDNMDLERERGITIKLQAARMNYQAKDGQQYVLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALEHNLEIIPVLNKIDLPGAEPDRVIGEIEEIIGLDCSGAILASAKEGIGISEILEA 180          
BLAST of FC871685 vs. ExPASy Swiss-Prot
Match: LEPA_NOSP7 (GTP-binding protein lepA OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=lepA PE=3 SV=1)

HSP 1 Score: 286.189 bits (731), Expect = 1.181e-76
Identity = 148/177 (83.62%), Postives = 159/177 (89.83%), Query Frame = 1
Query:  184 VPASNIRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFEN-EPFCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPGAEPSRVAREIEEVIGLDCTNAILCSAKEGIGINEILNA 711
            VPA  IRNF IIAHIDHGKSTLAD+LLQ TGTV+ R+MKEQFLDNMDLERERGITIKLQAARM Y  ++ + + LNLIDTPGHVDFSYEVSRSL ACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPGAEP RV  EIEE+IGLDC+ AIL SAKEG+GI+EIL A
Sbjct:    4 VPAVRIRNFCIIAHIDHGKSTLADRLLQATGTVEDRKMKEQFLDNMDLERERGITIKLQAARMNYTAKDGQQYVLNLIDTPGHVDFSYEVSRSLVACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPGAEPERVIGEIEEIIGLDCSGAILASAKEGLGIDEILEA 180          
BLAST of FC871685 vs. ExPASy Swiss-Prot
Match: LEPA_SYNP2 (GTP-binding protein lepA OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=lepA PE=3 SV=1)

HSP 1 Score: 285.034 bits (728), Expect = 2.631e-76
Identity = 146/177 (82.49%), Postives = 161/177 (90.96%), Query Frame = 1
Query:  184 VPASNIRNFSIIAHIDHGKSTLADKLLQMTGTVQKREMKEQFLDNMDLERERGITIKLQAARMRYVFEN-EPFCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPGAEPSRVAREIEEVIGLDCTNAILCSAKEGIGINEILNA 711
            VP S IRNFSIIAHIDHGKSTLAD++LQ T TV +R+MKEQFLDNM+LERERGITIKLQAARMRYV ++ E + LNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLAL+NNLEIIPVLNKIDLPGAEP RV  EIEEV+GLDCT+ I  SAK+G+GIN+IL +
Sbjct:    4 VPVSRIRNFSIIAHIDHGKSTLADRMLQDTQTVAQRDMKEQFLDNMELERERGITIKLQAARMRYVAKDGEEYILNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALDNNLEIIPVLNKIDLPGAEPDRVTEEIEEVVGLDCTDIIRASAKQGLGINDILES 180          
The following BLAST results are available for this feature:
BLAST of FC871685 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
LEPA_CYAP76.262e-7883.05GTP-binding protein lepA OS=Cyanothece sp. (strain... [more]
LEPA_THEEB1.395e-7784.18GTP-binding protein lepA OS=Thermosynechococcus el... [more]
LEPA_ANASP1.822e-7784.75GTP-binding protein lepA OS=Anabaena sp. (strain P... [more]
LEPA_TRIEI5.301e-7783.33GTP-binding protein lepA OS=Trichodesmium erythrae... [more]
LEPA_MICAN5.301e-7784.18GTP-binding protein lepA OS=Microcystis aeruginosa... [more]
LEPA_CYAP85.301e-7783.05GTP-binding protein lepA OS=Cyanothece sp. (strain... [more]
LEPA_CYAP49.042e-7782.22GTP-binding protein lepA OS=Cyanothece sp. (strain... [more]
LEPA_ANAVT9.042e-7784.18GTP-binding protein lepA OS=Anabaena variabilis (s... [more]
LEPA_NOSP71.181e-7683.62GTP-binding protein lepA OS=Nostoc punctiforme (st... [more]
LEPA_SYNP22.631e-7682.49GTP-binding protein lepA OS=Synechococcus sp. (str... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAK1CA10FM2 AbsCFruit1 Citrus sinensis cDNA clone KN0AAK1CA10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC871685 ID=FC871685; Name=FC871685; organism=Citrus sinensis; type=EST; length=711bp
ACGTTTGCAACACTAAAGAAGCCTCACATCTCATCACTCTCACATTTCCT
TTCTAAATCTCACCGGCGCTGCAATTATTCTCTCTCTATCTCTAAACATA
GCTGTATCTTTCGAGTCTCTTGCCAGAGCCAGGCTACAGATGCCGAGTTG
GCCACTCGAGCTGGACAGGACCGTCTCTTAAAGGTTCCTGCATCAAACAT
AAGGAACTTCAGCATAATAGCTCATATTGATCATGGGAAGTCGACTTTAG
CCGACAAATTGTTGCAAATGACTGGCACTGTACAGAAGCGAGAAATGAAG
GAGCAGTTTCTCGATAACATGGATTTGGAGAGAGAACGAGGCATCACTAT
CAAACTACAGGCAGCTCGAATGCGTTATGTATTCGAAAATGAACCGTTTT
GCTTGAATCTTATTGACACGCCAGGGCATGTGGACTTCTCGTATGAGGTT
TCTCGTTCTCTTGCTGCATGTGAGGGTGCTCTCCTTGTTGTAGATGCTTC
TCAGGGAGTGGAAGCCCAAACACTGGCTAATGTCTATTTGGCTTTGGAAA
ACAATCTTGAAATTATCCCAGTGTTGAACAAAATAGATCTTCCTGGTGCT
GAACCGAGTCGTGTTGCTCGGGAAATTGAAGAGGTTATTGGGCTAGATTG
TACCAATGCAATTCTCTGCTCTGCAAAGGAGGGCATTGGTATAAATGAAA
TTCTGAATGCA
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