FC871681

Overview
NameFC871681
Unique NameFC871681
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length421
Libraries
Library NameType
AbsCFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5271 contig Csv1_Contig5271:507..927. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC871681 vs. ExPASy Swiss-Prot
Match: LEA5_CITSI (Late embryogenesis abundant protein Lea5 OS=Citrus sinensis GN=LEA5 PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 2.708e-29
Identity = 61/62 (98.39%), Postives = 61/62 (98.39%), Query Frame = 2 
Query:    2 TISRTGIMEKNDLTPAVREDSGASSAWAPDPITGYYRPENRAVEIDPAELREMLLNHKVRAH 187
            TISRTGIMEKNDL PAVREDSGASSAWAPDPITGYYRPENRAVEIDPAELREMLLNHKVRAH
Sbjct:   36 TISRTGIMEKNDLRPAVREDSGASSAWAPDPITGYYRPENRAVEIDPAELREMLLNHKVRAH 97
[Close]
BLAST of FC871681 vs. ExPASy Swiss-Prot
Match: LEA5D_GOSHI (Late embryogenesis abundant protein Lea5-D OS=Gossypium hirsutum GN=LEA5-D PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.158e-14
Identity = 38/66 (57.58%), Postives = 46/66 (69.70%), Query Frame = 2 
Query:    2 TISRTGIMEKNDLTPAVREDSGA-----SSAWAPDPITGYYRPENRAVEIDPAELREMLLNHKVRA 184
            +  R G M K +   A++E S +     SSAWAPDP+TGYYRPEN   EID AELREMLLNH+VR+
Sbjct:   39 SFGRPGAMGKVERRDAMKESSSSETRAYSSAWAPDPVTGYYRPENCGAEIDAAELREMLLNHRVRS 104
[Close]
BLAST of FC871681 vs. ExPASy Swiss-Prot
Match: LEA5A_GOSHI (Late embryogenesis abundant protein Lea5-A OS=Gossypium hirsutum GN=LEA5-A PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.640e-13
Identity = 36/66 (54.55%), Postives = 46/66 (69.70%), Query Frame = 2 
Query:    2 TISRTGIMEKNDLTPAVREDSGA-----SSAWAPDPITGYYRPENRAVEIDPAELREMLLNHKVRA 184
            +  R G M K +   A++E S +     SSAWAPDP+TGYYRPEN   EID A+LREM+LNH+VR+
Sbjct:   39 SFGRPGAMGKVERRYAMKESSSSETRAYSSAWAPDPVTGYYRPENCGAEIDAADLREMMLNHRVRS 104
The following BLAST results are available for this feature:
BLAST of FC871681 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
LEA5_CITSI2.708e-2998.39Late embryogenesis abundant protein Lea5 OS=Citrus... [more]
LEA5D_GOSHI7.158e-1457.58Late embryogenesis abundant protein Lea5-D OS=Goss... [more]
LEA5A_GOSHI4.640e-1354.55Late embryogenesis abundant protein Lea5-A OS=Goss... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAK1CA06FM2 AbsCFruit1 Citrus sinensis cDNA clone KN0AAK1CA06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC871681 ID=FC871681; Name=FC871681; organism=Citrus sinensis; type=EST; length=421bp
AACCATATCTCGGACTGGTATCATGGAGAAAAATGATTTGACGCCTGCGG
TGAGAGAGGATTCTGGGGCCTCTTCTGCCTGGGCCCCAGATCCCATCACT
GGGTACTACAGGCCGGAGAATCGGGCGGTCGAGATTGATCCAGCAGAGCT
TCGAGAGATGCTGTTGAACCACAAAGTCAGGGCACACTAGGGAGTGGTCG
CGCATAGCAGCAGATCCTTTGCTGTTAGCGGTGCTTTAACTTTTAAGTGA
TGTTGTTACAGTAGCAATTTTGACTCACTCTAAAGTCTTTGCTGTTGTTT
TGATATCAACTGTTATTTACAACTTTTAATAGTGCATTTCCATGATTTTG
TCTCTATTAACTTGTCAATAAAAGTAAAGAATGCCTGTATTGCAAAAAAA
AAAAAAAAAAAAAAAAAAAAA
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