FC871458

Overview
NameFC871458
Unique NameFC871458
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length515
Libraries
Library NameType
AbsCFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6878 contig Csv1_Contig6878:1..515. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC871458 vs. ExPASy Swiss-Prot
Match: Y1515_ARATH (Uncharacterized TPR repeat-containing protein At1g05150 OS=Arabidopsis thaliana GN=At1g05150 PE=1 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 9.508e-30
Identity = 54/73 (73.97%), Postives = 66/73 (90.41%), Query Frame = 3 
Query:   66 QSRHGRHVCSVCRYPIIGSRFKEMKSHFSLCSQCYSEGKVPPTFKQDEYKFKEYGSESEAMKDKCICFTSQSH 284
            ++RHG  VCSVCRYP+IGSRFKE+K+ FSLC+QCY EGKVPP+FKQ+EYKF+EY SE+EAMK KC+CF+ QSH
Sbjct:  730 RNRHGNQVCSVCRYPVIGSRFKEVKARFSLCNQCYGEGKVPPSFKQEEYKFREYESEAEAMKAKCVCFSMQSH 802
[Close]
BLAST of FC871458 vs. ExPASy Swiss-Prot
Match: Y2245_ARATH (Uncharacterized TPR repeat-containing protein At2g32450 OS=Arabidopsis thaliana GN=At2g32450 PE=1 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 4.719e-29
Identity = 59/81 (72.84%), Postives = 69/81 (85.19%), Query Frame = 3 
Query:   54 FKLH---QSRHGRHVCSVCRYPIIGSRFKEMKSHFSLCSQCYSEGKVPPTFK-QDEYKFKEYGSESEAMKDKCICFTSQSH 284
            FKL    ++RHG  VCSVCRYPIIGSRFKE+K+ FSLC+QCYSEGK+PPTFK Q+EYKF+EY SE EAMK KC+CF+ QSH
Sbjct:  716 FKLETRDRNRHGNQVCSVCRYPIIGSRFKEVKTGFSLCNQCYSEGKIPPTFKQQEEYKFREYASEVEAMKAKCVCFSMQSH 796
The following BLAST results are available for this feature:
BLAST of FC871458 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
Y1515_ARATH9.508e-3073.97Uncharacterized TPR repeat-containing protein At1g... [more]
Y2245_ARATH4.719e-2972.84Uncharacterized TPR repeat-containing protein At2g... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAK1AD03FM2 AbsCFruit1 Citrus sinensis cDNA clone KN0AAK1AD03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC871458 ID=FC871458; Name=FC871458; organism=Citrus sinensis; type=EST; length=515bp
CAAGGAGCAGAAACTGAGCAAACATGACGTCCATGGCGATTCCTATCCCC
AGCTTCAAGCTTCATCAGAGTAGACATGGACGTCATGTTTGCTCAGTTTG
TCGCTACCCAATTATTGGCTCTCGCTTCAAGGAGATGAAATCACATTTTA
GTTTATGTAGTCAATGCTACAGTGAGGGAAAGGTGCCACCCACCTTTAAG
CAGGATGAATACAAATTTAAGGAGTATGGAAGTGAGTCTGAGGCAATGAA
AGATAAGTGCATCTGCTTTACTTCGCAATCGCATAATGCTTCATAGCTAG
TTGGCTGCCACTTCTGTCCTTGGGTTGATCTTGTATTATTCCTTCCATGT
GATTTTAGTTGTTCAGTGTGAAATATAGTGCTCATGTATGTGTTTAGTGG
GTATGCATGCCCTTGTATAATAAATTGTTTCAACTGGTGGCTCTGACAAT
CTTCTTTCATGACAGCTATTGTAGAAATTCTTCTCTTTGTAAAAAAAAAA
AAAAAAAAAAAAAAA
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