FC871457
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC871457 vs. ExPASy Swiss-Prot
Match: RK1_SPIOL (50S ribosomal protein L1, chloroplastic OS=Spinacia oleracea GN=RPL1 PE=1 SV=1) HSP 1 Score: 184.111 bits (466), Expect = 7.245e-46 Identity = 115/225 (51.11%), Postives = 132/225 (58.67%), Query Frame = 3 Query: 93 MATCGTTPSSLMLTYAATPLHPQDXXXXXXXXXXXXXXXAAFSLCTNLSVRGGERRASKWLDLYPLRQNKNGLPGHMLAAASAVQAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXISTNPKKGKAALPLKRDRTRSKRFLEIQNLREGKKEYDLKTAISLLKQMSCTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADL 767 MAT P SL L YA++ Q SLC L++ ER KW+D +Q+ + +LAA +A T PKKGKAALPLK DRTRSKRFLEIQ LRE K+EYDLKTA+SL+KQMS TKF ETAEAHFRLNIDPKYNDQQLRATVSLPKGTGK+VK+AV AQG+K DEAK A AD+ Sbjct: 1 MATAA--PPSLSLCYASSSFQYQQDPSFQTHFKPLLLNS---SLC-RLTLNQRERSCLKWVDFTSQKQSPKSVSFRVLAAVAAEAEVADMEEEEGESGGVATLPSP-----------TKPKKGKAALPLKSDRTRSKRFLEIQKLREIKQEYDLKTALSLMKQMSSTKFVETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKTVKIAVLAQGDKIDEAKAAGADI 208
BLAST of FC871457 vs. ExPASy Swiss-Prot
Match: RK1_ARATH (50S ribosomal protein L1, chloroplastic OS=Arabidopsis thaliana GN=RPL1 PE=1 SV=1) HSP 1 Score: 167.162 bits (422), Expect = 9.165e-41 Identity = 86/106 (81.13%), Postives = 94/106 (88.68%), Query Frame = 3 Query: 450 PKKGKAALPLKRDRTRSKRFLEIQNLREGKKEYDLKTAISLLKQMSCTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADL 767 PKKGKAAL LKRDRTRSKRFLEIQ LRE KKEYD+ TAISLLKQ + T+F E+ EAHFRLNIDPKYNDQQLRATVSLPKGTG++V VAV AQGEK DEAK+A AD+ Sbjct: 97 PKKGKAALVLKRDRTRSKRFLEIQKLRETKKEYDVNTAISLLKQTANTRFVESVEAHFRLNIDPKYNDQQLRATVSLPKGTGQTVIVAVLAQGEKVDEAKSAGADI 202
BLAST of FC871457 vs. ExPASy Swiss-Prot
Match: RK1_PEA (50S ribosomal protein L1, chloroplastic (Fragment) OS=Pisum sativum GN=RPL1 PE=2 SV=1) HSP 1 Score: 159.844 bits (403), Expect = 1.463e-38 Identity = 82/105 (78.10%), Postives = 89/105 (84.76%), Query Frame = 3 Query: 453 KKGKAALPLKRDRTRSKRFLEIQNLREGKKEYDLKTAISLLKQMSCTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADL 767 ++GK LK DR RSKRFLEIQ LRE KKEYDLKTAISL+K+ + TKF ET EAHFRLNIDPKYNDQQLRATVSLPKGTGK +KVAV QGE+FDEAKNA ADL Sbjct: 42 RQGKLHWRLKSDRVRSKRFLEIQKLRELKKEYDLKTAISLVKETAKTKFVETVEAHFRLNIDPKYNDQQLRATVSLPKGTGKPIKVAVLTQGERFDEAKNAGADL 146
BLAST of FC871457 vs. ExPASy Swiss-Prot
Match: RL1_MICAN (50S ribosomal protein L1 OS=Microcystis aeruginosa (strain NIES-843) GN=rplA PE=3 SV=1) HSP 1 Score: 98.9821 bits (245), Expect = 3.065e-20 Identity = 52/90 (57.78%), Postives = 65/90 (72.22%), Query Frame = 3 Query: 498 SKRFLEIQNLREGKKEYDLKTAISLLKQMSCTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADL 767 S+R + Q E K Y+ A++LLK+++ KF ETAEAH RL IDPKY DQQLR TVSLPKGTG++V+VAV +GEK EA NA AD+ Sbjct: 6 SRRLRDAQAKVENKA-YEPLEALTLLKELATAKFDETAEAHIRLGIDPKYTDQQLRTTVSLPKGTGRTVRVAVITRGEKVQEANNAGADI 94
BLAST of FC871457 vs. ExPASy Swiss-Prot
Match: RL1_CYAP8 (50S ribosomal protein L1 OS=Cyanothece sp. (strain PCC 8801) GN=rplA PE=3 SV=1) HSP 1 Score: 98.5969 bits (244), Expect = 4.003e-20 Identity = 52/90 (57.78%), Postives = 62/90 (68.89%), Query Frame = 3 Query: 498 SKRFLEIQNLREGKKEYDLKTAISLLKQMSCTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADL 767 SKRF E + + Y A+ LLK+ + KF E+AEAH RL IDPKY DQQLR TVSLPKGTG+ V+VAV A+GEK EA NA AD+ Sbjct: 6 SKRFKEALAKVDQNQTYAPLEALQLLKETATAKFNESAEAHIRLGIDPKYTDQQLRTTVSLPKGTGQEVRVAVIARGEKVQEANNAGADI 95
BLAST of FC871457 vs. ExPASy Swiss-Prot
Match: RL1_ANAVT (50S ribosomal protein L1 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=rplA PE=3 SV=1) HSP 1 Score: 97.4413 bits (241), Expect = 8.918e-20 Identity = 53/90 (58.89%), Postives = 64/90 (71.11%), Query Frame = 3 Query: 498 SKRFLEIQNLREGKKEYDLKTAISLLKQMSCTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADL 767 S+R E+Q E + EY A+SLLK+ + KF E AEAH RL IDPKY DQQLR TV+LPKGTG+ V+VAV A+GEK EA NA AD+ Sbjct: 6 SRRLRELQAKVEDR-EYGPLDALSLLKETATAKFAEAAEAHIRLGIDPKYTDQQLRTTVALPKGTGQIVRVAVIARGEKVTEASNAGADV 94
BLAST of FC871457 vs. ExPASy Swiss-Prot
Match: RK1_CYAPA (50S ribosomal protein L1, cyanelle OS=Cyanophora paradoxa GN=rpl1 PE=3 SV=1) HSP 1 Score: 96.6709 bits (239), Expect = 1.521e-19 Identity = 52/93 (55.91%), Postives = 66/93 (70.97%), Query Frame = 3 Query: 489 RTRSKRFLEIQNLREGKKEYDLKTAISLLKQMSCTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADL 767 + RS+R E+ E ++ Y+ AI LLKQ+S KF ET E H RL IDPKYNDQQLRATV+LP GTG++++VAV +GEK +EA A ADL Sbjct: 2 KKRSRRMQELVGKVE-EQLYEPLEAIQLLKQISTAKFIETVEVHCRLGIDPKYNDQQLRATVTLPNGTGQTLRVAVITRGEKINEASTAGADL 93
BLAST of FC871457 vs. ExPASy Swiss-Prot
Match: RL1_SYNP6 (50S ribosomal protein L1 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=rplA PE=3 SV=1) HSP 1 Score: 96.2857 bits (238), Expect = 1.987e-19 Identity = 51/93 (54.84%), Postives = 67/93 (72.04%), Query Frame = 3 Query: 489 RTRSKRFLEIQNLREGKKEYDLKTAISLLKQMSCTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADL 767 R S+R E+Q E + Y+ A++LLK+ + KF E+AEAH RL IDPKY DQQLR TV+LPKGTG++++VAV A+GEK EAK A AD+ Sbjct: 3 RKVSRRLQELQKKVEDRA-YEPLAALNLLKETATAKFPESAEAHIRLGIDPKYTDQQLRTTVALPKGTGQTIRVAVIARGEKVAEAKAAGADI 94
BLAST of FC871457 vs. ExPASy Swiss-Prot
Match: RL1_SYNE7 (50S ribosomal protein L1 OS=Synechococcus elongatus (strain PCC 7942) GN=rplA PE=3 SV=1) HSP 1 Score: 96.2857 bits (238), Expect = 1.987e-19 Identity = 51/93 (54.84%), Postives = 67/93 (72.04%), Query Frame = 3 Query: 489 RTRSKRFLEIQNLREGKKEYDLKTAISLLKQMSCTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADL 767 R S+R E+Q E + Y+ A++LLK+ + KF E+AEAH RL IDPKY DQQLR TV+LPKGTG++++VAV A+GEK EAK A AD+ Sbjct: 3 RKVSRRLQELQKKVEDRA-YEPLAALNLLKETATAKFPESAEAHIRLGIDPKYTDQQLRTTVALPKGTGQTIRVAVIARGEKVAEAKAAGADI 94
BLAST of FC871457 vs. ExPASy Swiss-Prot
Match: RL1_THEM4 (50S ribosomal protein L1 OS=Thermosipho melanesiensis (strain BI429 / DSM 12029) GN=rplA PE=3 SV=1) HSP 1 Score: 95.9005 bits (237), Expect = 2.595e-19 Identity = 47/89 (52.81%), Postives = 64/89 (71.91%), Query Frame = 3 Query: 498 SKRFLEIQNLREGKKEYDLKTAISLLKQMSCTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARAD 764 SKR+ E++ L + KEYDL A+ L K+++ KF ET E H + NID + +DQQ+R+T+SLP GTGK V+V V A+GEK +EAK A AD Sbjct: 5 SKRYNEVRKLVDRTKEYDLNEAVDLAKKVATAKFDETVELHIKTNIDYRKSDQQIRSTISLPHGTGKEVRVLVFAKGEKAEEAKKAGAD 93 The following BLAST results are available for this feature:
BLAST of FC871457 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >FC871457 ID=FC871457; Name=FC871457; organism=Citrus sinensis; type=EST; length=768bpback to top |