FC871457

Overview
NameFC871457
Unique NameFC871457
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length768
Libraries
Library NameType
AbsCFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11533 contig Csv1_Contig11533:38..805. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC871457 vs. ExPASy Swiss-Prot
Match: RK1_SPIOL (50S ribosomal protein L1, chloroplastic OS=Spinacia oleracea GN=RPL1 PE=1 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 7.245e-46
Identity = 115/225 (51.11%), Postives = 132/225 (58.67%), Query Frame = 3
Query:   93 MATCGTTPSSLMLTYAATPLHPQDXXXXXXXXXXXXXXXAAFSLCTNLSVRGGERRASKWLDLYPLRQNKNGLPGHMLAAASAVQAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXISTNPKKGKAALPLKRDRTRSKRFLEIQNLREGKKEYDLKTAISLLKQMSCTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADL 767
            MAT    P SL L YA++    Q                   SLC  L++   ER   KW+D    +Q+   +   +LAA +A                                  T PKKGKAALPLK DRTRSKRFLEIQ LRE K+EYDLKTA+SL+KQMS TKF ETAEAHFRLNIDPKYNDQQLRATVSLPKGTGK+VK+AV AQG+K DEAK A AD+
Sbjct:    1 MATAA--PPSLSLCYASSSFQYQQDPSFQTHFKPLLLNS---SLC-RLTLNQRERSCLKWVDFTSQKQSPKSVSFRVLAAVAAEAEVADMEEEEGESGGVATLPSP-----------TKPKKGKAALPLKSDRTRSKRFLEIQKLREIKQEYDLKTALSLMKQMSSTKFVETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKTVKIAVLAQGDKIDEAKAAGADI 208          
BLAST of FC871457 vs. ExPASy Swiss-Prot
Match: RK1_ARATH (50S ribosomal protein L1, chloroplastic OS=Arabidopsis thaliana GN=RPL1 PE=1 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 9.165e-41
Identity = 86/106 (81.13%), Postives = 94/106 (88.68%), Query Frame = 3
Query:  450 PKKGKAALPLKRDRTRSKRFLEIQNLREGKKEYDLKTAISLLKQMSCTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADL 767
            PKKGKAAL LKRDRTRSKRFLEIQ LRE KKEYD+ TAISLLKQ + T+F E+ EAHFRLNIDPKYNDQQLRATVSLPKGTG++V VAV AQGEK DEAK+A AD+
Sbjct:   97 PKKGKAALVLKRDRTRSKRFLEIQKLRETKKEYDVNTAISLLKQTANTRFVESVEAHFRLNIDPKYNDQQLRATVSLPKGTGQTVIVAVLAQGEKVDEAKSAGADI 202          
BLAST of FC871457 vs. ExPASy Swiss-Prot
Match: RK1_PEA (50S ribosomal protein L1, chloroplastic (Fragment) OS=Pisum sativum GN=RPL1 PE=2 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.463e-38
Identity = 82/105 (78.10%), Postives = 89/105 (84.76%), Query Frame = 3
Query:  453 KKGKAALPLKRDRTRSKRFLEIQNLREGKKEYDLKTAISLLKQMSCTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADL 767
            ++GK    LK DR RSKRFLEIQ LRE KKEYDLKTAISL+K+ + TKF ET EAHFRLNIDPKYNDQQLRATVSLPKGTGK +KVAV  QGE+FDEAKNA ADL
Sbjct:   42 RQGKLHWRLKSDRVRSKRFLEIQKLRELKKEYDLKTAISLVKETAKTKFVETVEAHFRLNIDPKYNDQQLRATVSLPKGTGKPIKVAVLTQGERFDEAKNAGADL 146          
BLAST of FC871457 vs. ExPASy Swiss-Prot
Match: RL1_MICAN (50S ribosomal protein L1 OS=Microcystis aeruginosa (strain NIES-843) GN=rplA PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.065e-20
Identity = 52/90 (57.78%), Postives = 65/90 (72.22%), Query Frame = 3
Query:  498 SKRFLEIQNLREGKKEYDLKTAISLLKQMSCTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADL 767
            S+R  + Q   E K  Y+   A++LLK+++  KF ETAEAH RL IDPKY DQQLR TVSLPKGTG++V+VAV  +GEK  EA NA AD+
Sbjct:    6 SRRLRDAQAKVENKA-YEPLEALTLLKELATAKFDETAEAHIRLGIDPKYTDQQLRTTVSLPKGTGRTVRVAVITRGEKVQEANNAGADI 94          
BLAST of FC871457 vs. ExPASy Swiss-Prot
Match: RL1_CYAP8 (50S ribosomal protein L1 OS=Cyanothece sp. (strain PCC 8801) GN=rplA PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 4.003e-20
Identity = 52/90 (57.78%), Postives = 62/90 (68.89%), Query Frame = 3
Query:  498 SKRFLEIQNLREGKKEYDLKTAISLLKQMSCTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADL 767
            SKRF E     +  + Y    A+ LLK+ +  KF E+AEAH RL IDPKY DQQLR TVSLPKGTG+ V+VAV A+GEK  EA NA AD+
Sbjct:    6 SKRFKEALAKVDQNQTYAPLEALQLLKETATAKFNESAEAHIRLGIDPKYTDQQLRTTVSLPKGTGQEVRVAVIARGEKVQEANNAGADI 95          
BLAST of FC871457 vs. ExPASy Swiss-Prot
Match: RL1_ANAVT (50S ribosomal protein L1 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=rplA PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 8.918e-20
Identity = 53/90 (58.89%), Postives = 64/90 (71.11%), Query Frame = 3
Query:  498 SKRFLEIQNLREGKKEYDLKTAISLLKQMSCTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADL 767
            S+R  E+Q   E + EY    A+SLLK+ +  KF E AEAH RL IDPKY DQQLR TV+LPKGTG+ V+VAV A+GEK  EA NA AD+
Sbjct:    6 SRRLRELQAKVEDR-EYGPLDALSLLKETATAKFAEAAEAHIRLGIDPKYTDQQLRTTVALPKGTGQIVRVAVIARGEKVTEASNAGADV 94          
BLAST of FC871457 vs. ExPASy Swiss-Prot
Match: RK1_CYAPA (50S ribosomal protein L1, cyanelle OS=Cyanophora paradoxa GN=rpl1 PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.521e-19
Identity = 52/93 (55.91%), Postives = 66/93 (70.97%), Query Frame = 3
Query:  489 RTRSKRFLEIQNLREGKKEYDLKTAISLLKQMSCTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADL 767
            + RS+R  E+    E ++ Y+   AI LLKQ+S  KF ET E H RL IDPKYNDQQLRATV+LP GTG++++VAV  +GEK +EA  A ADL
Sbjct:    2 KKRSRRMQELVGKVE-EQLYEPLEAIQLLKQISTAKFIETVEVHCRLGIDPKYNDQQLRATVTLPNGTGQTLRVAVITRGEKINEASTAGADL 93          
BLAST of FC871457 vs. ExPASy Swiss-Prot
Match: RL1_SYNP6 (50S ribosomal protein L1 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=rplA PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.987e-19
Identity = 51/93 (54.84%), Postives = 67/93 (72.04%), Query Frame = 3
Query:  489 RTRSKRFLEIQNLREGKKEYDLKTAISLLKQMSCTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADL 767
            R  S+R  E+Q   E +  Y+   A++LLK+ +  KF E+AEAH RL IDPKY DQQLR TV+LPKGTG++++VAV A+GEK  EAK A AD+
Sbjct:    3 RKVSRRLQELQKKVEDRA-YEPLAALNLLKETATAKFPESAEAHIRLGIDPKYTDQQLRTTVALPKGTGQTIRVAVIARGEKVAEAKAAGADI 94          
BLAST of FC871457 vs. ExPASy Swiss-Prot
Match: RL1_SYNE7 (50S ribosomal protein L1 OS=Synechococcus elongatus (strain PCC 7942) GN=rplA PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.987e-19
Identity = 51/93 (54.84%), Postives = 67/93 (72.04%), Query Frame = 3
Query:  489 RTRSKRFLEIQNLREGKKEYDLKTAISLLKQMSCTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARADL 767
            R  S+R  E+Q   E +  Y+   A++LLK+ +  KF E+AEAH RL IDPKY DQQLR TV+LPKGTG++++VAV A+GEK  EAK A AD+
Sbjct:    3 RKVSRRLQELQKKVEDRA-YEPLAALNLLKETATAKFPESAEAHIRLGIDPKYTDQQLRTTVALPKGTGQTIRVAVIARGEKVAEAKAAGADI 94          
BLAST of FC871457 vs. ExPASy Swiss-Prot
Match: RL1_THEM4 (50S ribosomal protein L1 OS=Thermosipho melanesiensis (strain BI429 / DSM 12029) GN=rplA PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.595e-19
Identity = 47/89 (52.81%), Postives = 64/89 (71.91%), Query Frame = 3
Query:  498 SKRFLEIQNLREGKKEYDLKTAISLLKQMSCTKFTETAEAHFRLNIDPKYNDQQLRATVSLPKGTGKSVKVAVPAQGEKFDEAKNARAD 764
            SKR+ E++ L +  KEYDL  A+ L K+++  KF ET E H + NID + +DQQ+R+T+SLP GTGK V+V V A+GEK +EAK A AD
Sbjct:    5 SKRYNEVRKLVDRTKEYDLNEAVDLAKKVATAKFDETVELHIKTNIDYRKSDQQIRSTISLPHGTGKEVRVLVFAKGEKAEEAKKAGAD 93          
The following BLAST results are available for this feature:
BLAST of FC871457 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RK1_SPIOL7.245e-4651.1150S ribosomal protein L1, chloroplastic OS=Spinaci... [more]
RK1_ARATH9.165e-4181.1350S ribosomal protein L1, chloroplastic OS=Arabido... [more]
RK1_PEA1.463e-3878.1050S ribosomal protein L1, chloroplastic (Fragment)... [more]
RL1_MICAN3.065e-2057.7850S ribosomal protein L1 OS=Microcystis aeruginosa... [more]
RL1_CYAP84.003e-2057.7850S ribosomal protein L1 OS=Cyanothece sp. (strain... [more]
RL1_ANAVT8.918e-2058.8950S ribosomal protein L1 OS=Anabaena variabilis (s... [more]
RK1_CYAPA1.521e-1955.9150S ribosomal protein L1, cyanelle OS=Cyanophora p... [more]
RL1_SYNP61.987e-1954.8450S ribosomal protein L1 OS=Synechococcus sp. (str... [more]
RL1_SYNE71.987e-1954.8450S ribosomal protein L1 OS=Synechococcus elongatu... [more]
RL1_THEM42.595e-1952.8150S ribosomal protein L1 OS=Thermosipho melanesien... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAK1AD02FM2 AbsCFruit1 Citrus sinensis cDNA clone KN0AAK1AD02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC871457 ID=FC871457; Name=FC871457; organism=Citrus sinensis; type=EST; length=768bp
CTTCTTCTCATGATATATTCACTGTTTTGCAAAAATGGAGCTTGTTTACA
ATGTGCCCATGCTCATTAAAGTTCCAATACTGTATCCGCAAAATGGCAAC
ATGTGGCACTACTCCGTCGTCTCTGATGCTAACATACGCCGCCACGCCAT
TACACCCGCAAGACTTGACACCCTCGCTGTCTCTTCTTTCTTTCAAACCC
TCGAAGACTGCAGCTTTCTCACTGTGCACCAACCTCAGCGTTAGAGGAGG
GGAGAGGAGGGCGAGCAAGTGGCTTGATTTGTATCCGCTGAGACAGAACA
AAAATGGGCTTCCTGGACACATGCTGGCGGCTGCTTCTGCTGTCCAAGCT
GATACTGACTTGGCCACTGACGATGTGGAGGACGATACTCAGGGAGGTGC
TGAAGGAGCAACTGCTACTGCTACTGCTACTGCTACTATTTCAACTAATC
CTAAGAAAGGCAAGGCTGCGTTGCCTCTCAAGAGAGACAGGACTAGGTCT
AAAAGATTCCTGGAAATTCAAAATTTGAGGGAAGGCAAGAAAGAGTATGA
TTTGAAGACGGCAATATCTTTGTTGAAGCAGATGTCATGTACAAAGTTCA
CGGAAACAGCTGAAGCCCATTTTCGCCTCAACATTGATCCCAAATACAAT
GATCAACAGCTTAGAGCAACAGTGAGTTTACCCAAGGGAACTGGAAAATC
TGTTAAGGTGGCTGTTCCTGCTCAAGGTGAAAAATTCGATGAAGCAAAAA
ATGCAAGAGCAGATTTGG
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