FC871445

Overview
NameFC871445
Unique NameFC871445
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length579
Libraries
Library NameType
AbsCFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2749 contig Csv1_Contig2749:134..712. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC871445 vs. ExPASy Swiss-Prot
Match: TPIS_PETHY (Triosephosphate isomerase, cytosolic OS=Petunia hybrida GN=TPIP1 PE=2 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 4.132e-41
Identity = 82/93 (88.17%), Postives = 87/93 (93.55%), Query Frame = 1
Query:   55 VVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVASSTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKSATVKKN 333
            VV+AYEPVWAIGTGKVA+PAQAQEVHAELRKWL  NVS EVA+STRIIYGGSVNGANCKEL  QPDVDGFLVGGASLKPEFIDIIK+A VK+N
Sbjct:  161 VVVAYEPVWAIGTGKVASPAQAQEVHAELRKWLAANVSPEVAASTRIIYGGSVNGANCKELGGQPDVDGFLVGGASLKPEFIDIIKAAEVKRN 253          
BLAST of FC871445 vs. ExPASy Swiss-Prot
Match: TPIS_COPJA (Triosephosphate isomerase, cytosolic OS=Coptis japonica PE=2 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 1.329e-39
Identity = 77/93 (82.80%), Postives = 86/93 (92.47%), Query Frame = 1
Query:   55 VVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVASSTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKSATVKKN 333
            +V+AYEPVWAIGTGKVA+PAQAQEVH ELRKW+K+NV A+VA S RIIYGGSVNGAN KELA QPD+DGFLVGGASLKPEF+DIIKSATVK +
Sbjct:  161 IVVAYEPVWAIGTGKVASPAQAQEVHFELRKWIKENVGADVAGSVRIIYGGSVNGANSKELAGQPDIDGFLVGGASLKPEFVDIIKSATVKSS 253          
BLAST of FC871445 vs. ExPASy Swiss-Prot
Match: TPIS_SECCE (Triosephosphate isomerase, cytosolic OS=Secale cereale PE=2 SV=3)

HSP 1 Score: 161.77 bits (408), Expect = 2.268e-39
Identity = 80/91 (87.91%), Postives = 84/91 (92.31%), Query Frame = 1
Query:   55 VVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVASSTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKSATVK 327
            VV+AYEPVWAIGTGKVA+PAQAQEVHA LR WLK NVS EVA STRIIYGGSV GA+CKELAAQPDVDGFLVGGASLKPEFIDII +ATVK
Sbjct:  161 VVVAYEPVWAIGTGKVASPAQAQEVHANLRDWLKTNVSPEVAESTRIIYGGSVTGASCKELAAQPDVDGFLVGGASLKPEFIDIINAATVK 251          
BLAST of FC871445 vs. ExPASy Swiss-Prot
Match: TPIS_MAIZE (Triosephosphate isomerase, cytosolic OS=Zea mays PE=3 SV=3)

HSP 1 Score: 161.384 bits (407), Expect = 2.961e-39
Identity = 80/91 (87.91%), Postives = 82/91 (90.11%), Query Frame = 1
Query:   55 VVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVASSTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKSATVK 327
            VV+AYEPVWAIGTGKVATPAQAQEVHA LR WLK N S EVA STRIIYGGSV  ANCKELAAQPDVDGFLVGGASLKPEFIDII +ATVK
Sbjct:  161 VVVAYEPVWAIGTGKVATPAQAQEVHASLRDWLKTNASPEVAESTRIIYGGSVTAANCKELAAQPDVDGFLVGGASLKPEFIDIINAATVK 251          
BLAST of FC871445 vs. ExPASy Swiss-Prot
Match: TPIS_ORYSJ (Triosephosphate isomerase, cytosolic OS=Oryza sativa subsp. japonica GN=TPI PE=1 SV=3)

HSP 1 Score: 160.999 bits (406), Expect = 3.868e-39
Identity = 81/91 (89.01%), Postives = 83/91 (91.21%), Query Frame = 1
Query:   55 VVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVASSTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKSATVK 327
            VV+AYEPVWAIGTGKVATP QAQEVH  LRKWL  NVSAEVA STRIIYGGSV GANCKELAA+PDVDGFLVGGASLKPEFIDII SATVK
Sbjct:  161 VVVAYEPVWAIGTGKVATPDQAQEVHDGLRKWLAANVSAEVAESTRIIYGGSVTGANCKELAAKPDVDGFLVGGASLKPEFIDIINSATVK 251          
BLAST of FC871445 vs. ExPASy Swiss-Prot
Match: TPIS_LACSA (Triosephosphate isomerase, cytosolic (Fragment) OS=Lactuca sativa PE=2 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 5.052e-39
Identity = 79/93 (84.95%), Postives = 86/93 (92.47%), Query Frame = 1
Query:   55 VVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVASSTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKSATVKKN 333
            VVLAYEPVWAIGTGKVA+PAQAQEVHA LRKW  DNVSAEV++STRIIYGGSV+G+NCKEL  Q DVDGFLVGGASLKPEFIDIIK+A VKK+
Sbjct:  102 VVLAYEPVWAIGTGKVASPAQAQEVHAGLRKWFCDNVSAEVSASTRIIYGGSVSGSNCKELGGQTDVDGFLVGGASLKPEFIDIIKAAEVKKS 194          
BLAST of FC871445 vs. ExPASy Swiss-Prot
Match: TPIS_ARATH (Triosephosphate isomerase, cytosolic OS=Arabidopsis thaliana GN=CTIMC PE=1 SV=2)

HSP 1 Score: 160.229 bits (404), Expect = 6.597e-39
Identity = 78/93 (83.87%), Postives = 85/93 (91.40%), Query Frame = 1
Query:   55 VVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVASSTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKSATVKKN 333
            VV+AYEPVWAIGTGKVA+PAQAQEVH ELRKWL  NVSA+VA++TRIIYGGSVNG NCKEL  Q DVDGFLVGGASLKPEFIDIIK+A VKK+
Sbjct:  161 VVIAYEPVWAIGTGKVASPAQAQEVHDELRKWLAKNVSADVAATTRIIYGGSVNGGNCKELGGQADVDGFLVGGASLKPEFIDIIKAAEVKKS 253          
BLAST of FC871445 vs. ExPASy Swiss-Prot
Match: TPIS_HORVU (Triosephosphate isomerase, cytosolic OS=Hordeum vulgare PE=1 SV=3)

HSP 1 Score: 156.762 bits (395), Expect = 7.294e-38
Identity = 78/90 (86.67%), Postives = 81/90 (90.00%), Query Frame = 1
Query:   58 VLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVASSTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKSATVK 327
            V+AYEPVWAIGTGKVATPAQAQEVHA LR WLK NVS EVA STRIIYGGSV GA+CKELAAQ DVDGFLVGGASLKPEFIDII +A VK
Sbjct:  162 VVAYEPVWAIGTGKVATPAQAQEVHANLRDWLKTNVSPEVAESTRIIYGGSVTGASCKELAAQADVDGFLVGGASLKPEFIDIINAAAVK 251          
BLAST of FC871445 vs. ExPASy Swiss-Prot
Match: TPIS_MACMU (Triosephosphate isomerase OS=Macaca mulatta GN=TPI1 PE=3 SV=2)

HSP 1 Score: 150.214 bits (378), Expect = 6.827e-36
Identity = 77/101 (76.24%), Postives = 82/101 (81.19%), Query Frame = 1
Query:   13 VFFTNLYDQSKCHPVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVASSTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 315
            V   N+ D SK   VVLAYEPVWAIGTGK ATP QAQEVH +LR WLK NVS  VA STRIIYGGSV GA CKELA+QPDVDGFLVGGASLKPEF+DII +
Sbjct:  150 VIADNVKDWSK---VVLAYEPVWAIGTGKTATPQQAQEVHEKLRGWLKSNVSEAVAQSTRIIYGGSVTGATCKELASQPDVDGFLVGGASLKPEFVDIINA 247          
BLAST of FC871445 vs. ExPASy Swiss-Prot
Match: TPIS_MACFA (Triosephosphate isomerase OS=Macaca fascicularis GN=TPI1 PE=2 SV=3)

HSP 1 Score: 150.214 bits (378), Expect = 6.827e-36
Identity = 77/101 (76.24%), Postives = 82/101 (81.19%), Query Frame = 1
Query:   13 VFFTNLYDQSKCHPVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVASSTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 315
            V   N+ D SK   VVLAYEPVWAIGTGK ATP QAQEVH +LR WLK NVS  VA STRIIYGGSV GA CKELA+QPDVDGFLVGGASLKPEF+DII +
Sbjct:  150 VIADNVKDWSK---VVLAYEPVWAIGTGKTATPQQAQEVHEKLRGWLKSNVSEAVAQSTRIIYGGSVTGATCKELASQPDVDGFLVGGASLKPEFVDIINA 247          
The following BLAST results are available for this feature:
BLAST of FC871445 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_PETHY4.132e-4188.17Triosephosphate isomerase, cytosolic OS=Petunia hy... [more]
TPIS_COPJA1.329e-3982.80Triosephosphate isomerase, cytosolic OS=Coptis jap... [more]
TPIS_SECCE2.268e-3987.91Triosephosphate isomerase, cytosolic OS=Secale cer... [more]
TPIS_MAIZE2.961e-3987.91Triosephosphate isomerase, cytosolic OS=Zea mays P... [more]
TPIS_ORYSJ3.868e-3989.01Triosephosphate isomerase, cytosolic OS=Oryza sati... [more]
TPIS_LACSA5.052e-3984.95Triosephosphate isomerase, cytosolic (Fragment) OS... [more]
TPIS_ARATH6.597e-3983.87Triosephosphate isomerase, cytosolic OS=Arabidopsi... [more]
TPIS_HORVU7.294e-3886.67Triosephosphate isomerase, cytosolic OS=Hordeum vu... [more]
TPIS_MACMU6.827e-3676.24Triosephosphate isomerase OS=Macaca mulatta GN=TPI... [more]
TPIS_MACFA6.827e-3676.24Triosephosphate isomerase OS=Macaca fascicularis G... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAK1AC12FM2 AbsCFruit1 Citrus sinensis cDNA clone KN0AAK1AC12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC871445 ID=FC871445; Name=FC871445; organism=Citrus sinensis; type=EST; length=579bp
CATTCTTGGATAGTGTTCTTTACTAATTTATATGATCAATCCAAGTGTCA
TCCTGTTGTGTTGGCTTATGAGCCAGTTTGGGCCATTGGTACCGGGAAGG
TTGCAACCCCTGCTCAGGCTCAGGAAGTCCATGCTGAACTGAGGAAATGG
CTTAAAGACAATGTCAGTGCTGAAGTTGCATCATCAACTAGAATCATCTA
CGGAGGTTCTGTAAATGGAGCAAATTGCAAAGAATTGGCAGCACAACCTG
ATGTGGATGGATTTTTGGTTGGTGGAGCTTCTCTAAAGCCGGAGTTCATC
GATATTATCAAGTCTGCCACAGTGAAGAAGAATTGAAGTTAAAGACCAAG
CTACTCGGCTTGCTGATGCCTGCAGTTTTCTCTGTTATGCGTTCTGGAAA
CTAGCGTTGTAATTTTTGTGGTCTGTTAAGTGTTACCAACGCCTTTCCAG
TATAATAAGTTAAATCTTCAGAATTCTTAAGAATCTCTTTCCTATTTCAG
TGGGGATTTGAAACTTATCATTGTGGATTTAATAAATGGTTGCTTTTCCC
TTCTTGCAAAATAAAAAAAAAAAAAAAAA
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