FC871440

Overview
NameFC871440
Unique NameFC871440
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length837
Libraries
Library NameType
AbsCFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13632 contig Csv1_Contig13632:98..934. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC871440 vs. ExPASy Swiss-Prot
Match: CAF1K_ARATH (Probable CCR4-associated factor 1 homolog 11 OS=Arabidopsis thaliana GN=CAF1-11 PE=2 SV=1)

HSP 1 Score: 325.479 bits (833), Expect = 2.318e-88
Identity = 161/222 (72.52%), Postives = 184/222 (82.88%), Query Frame = 3
Query:  174 REVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDHYKVLKSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDVATDAHAPDSIELLRLQGIDFERNREEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTRRSLPSGLDEFLTVLRVFFGNNIYDVKHIMRFC-QSLYGGLDRVARTLDV 836
            R+VWA NLESEF+LI  +++ YPFISMDTEFPG++Y+ D+D       R+  P+  Y +LKSNVDAL+LIQVGLTLSD+ GNLPDLG   N ++IWEFNFRDFDV  D HAPDSIELLR  GIDFERNR EGV+S RFAELMMSSGL+CNESVSWVTFHSAYDFGYLVKILTRR LP  L EFL +LR FFG+ +YDVKHIMRFC Q LYGGLDRVAR+L+V
Sbjct:   15 RDVWAYNLESEFDLIRGIVEDYPFISMDTEFPGVIYKADLD-----VLRRGNPNYLYNLLKSNVDALSLIQVGLTLSDADGNLPDLGGQKNRRYIWEFNFRDFDVERDPHAPDSIELLRRHGIDFERNRREGVESERFAELMMSSGLICNESVSWVTFHSAYDFGYLVKILTRRQLPVALREFLGLLRAFFGDRVYDVKHIMRFCEQRLYGGLDRVARSLEV 231          
BLAST of FC871440 vs. ExPASy Swiss-Prot
Match: CAF1I_ARATH (Probable CCR4-associated factor 1 homolog 9 OS=Arabidopsis thaliana GN=CAF1-9 PE=2 SV=1)

HSP 1 Score: 320.472 bits (820), Expect = 7.456e-87
Identity = 160/222 (72.07%), Postives = 182/222 (81.98%), Query Frame = 3
Query:  174 REVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDHYKVLKSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDVATDAHAPDSIELLRLQGIDFERNREEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTRRSLPSGLDEFLTVLRVFFGNNIYDVKHIMRFCQ-SLYGGLDRVARTLDV 836
            REVWA NLESEFELIS++ID YPFISMDTEFPG++++ D+        R   P D Y +LK+NVDAL+LIQVGLTLSD +GNLPDLG   +  FIWEFNFRDFDVA DAHAPDSIELLR QGIDFERN  +GV+S RFAELMMSSGLVCNE VSWVTFHSAYDFGYL+KILTRR LP  L EF  V+RV FG  +YDVKH+M+FC+  L+GGLDRVARTL+V
Sbjct:   20 REVWAENLESEFELISEIIDDYPFISMDTEFPGVIFKSDL--------RFTNPDDLYTLLKANVDALSLIQVGLTLSDVNGNLPDLGDDLHRGFIWEFNFRDFDVARDAHAPDSIELLRRQGIDFERNCRDGVESERFAELMMSSGLVCNEEVSWVTFHSAYDFGYLMKILTRRELPGALGEFKRVMRVLFGERVYDVKHMMKFCERRLFGGLDRVARTLEV 233          
BLAST of FC871440 vs. ExPASy Swiss-Prot
Match: CAF1G_ARATH (Probable CCR4-associated factor 1 homolog 7 OS=Arabidopsis thaliana GN=CAF1-7 PE=2 SV=2)

HSP 1 Score: 244.588 bits (623), Expect = 5.200e-64
Identity = 122/222 (54.95%), Postives = 162/222 (72.97%), Query Frame = 3
Query:  174 REVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDHYKVLKSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKF-IWEFNFRDFDVATDAHAPDSIELLRLQGIDFERNREEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTRRSLPSGLDEFLTVLRVFFGNNIYDVKHIMRFCQSLYGGLDRVARTLDV 836
            REVW  NLESE  LI +V+D +PF++MDTEFPG+V RP     T   +       HY+ LK+NV+ L +IQ+GLT SD  GNLP  G+  +NK+ IW+FNFR+FD+ +D +A DSIELLR  GIDF +N E G+DS RFAEL+MSSG+V NE+V WVTFHS YDFGYL+K+LT ++LP     F  ++ V+F   +YD+KH+M+FC SL+GGL+++A  LDV
Sbjct:   13 REVWNDNLESEMALIREVVDDFPFVAMDTEFPGIVCRPVGTFKTNTEY-------HYETLKTNVNILKMIQLGLTFSDEKGNLPTCGT--DNKYCIWQFNFREFDLESDIYATDSIELLRQSGIDFVKNNEFGIDSKRFAELLMSSGIVLNENVHWVTFHSGYDFGYLLKLLTCQNLPETQTGFFEMISVYF-PRVYDIKHLMKFCNSLHGGLNKLAELLDV 224          
BLAST of FC871440 vs. ExPASy Swiss-Prot
Match: CAF1F_ARATH (Probable CCR4-associated factor 1 homolog 6 OS=Arabidopsis thaliana GN=CAF1-6 PE=2 SV=1)

HSP 1 Score: 230.335 bits (586), Expect = 1.015e-59
Identity = 113/222 (50.90%), Postives = 157/222 (70.72%), Query Frame = 3
Query:  174 REVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRP-DVDPSTRPYFRQRKPSDHYKVLKSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDVATDAHAPDSIELLRLQGIDFERNREEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTRRSLPSGLDEFLTVLRVFFGNNIYDVKHIMRFCQSLYGGLDRVARTLDV 836
            REVW  NL+ E +LI  V+D +P+++MDTEFPG+V RP     S   Y        HY+ LK+NV+ L +IQ+GLT S+  GNLP  G+  +   IW+FNFR+FD+ +D  A DSIELL+  GID  +N  +G+DS RFAEL+MSSG+V NE+V WVTFHS YDFGYL+K+LT ++LP    +F  ++ V+F   +YD+KH+M+FC SL+GGL+++A  L+V
Sbjct:   13 REVWNDNLQEEMDLIRDVVDDFPYVAMDTEFPGIVVRPVGTFKSNADY--------HYETLKTNVNILKMIQLGLTFSNEQGNLPTCGT--DKYCIWQFNFREFDLDSDIFALDSIELLKQSGIDLAKNTLDGIDSKRFAELLMSSGIVLNENVHWVTFHSGYDFGYLLKLLTCQNLPDSQTDFFKLINVYF-PTVYDIKHLMKFCNSLHGGLNKLAELLEV 223          
BLAST of FC871440 vs. ExPASy Swiss-Prot
Match: CAF1J_ARATH (Probable CCR4-associated factor 1 homolog 10 OS=Arabidopsis thaliana GN=CAF1-10 PE=2 SV=1)

HSP 1 Score: 229.95 bits (585), Expect = 1.325e-59
Identity = 117/222 (52.70%), Postives = 158/222 (71.17%), Query Frame = 3
Query:  174 REVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDHYKVLKSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKF-IWEFNFRDFDVATDAHAPDSIELLRLQGIDFERNREEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTRRSLPSGLDEFLTVLRVFFGNNIYDVKHIMRFCQSLYGGLDRVARTLDV 836
            REVW  NL  EF LI +++D++ +I+MDTEFPG+V +P    +T  Y        +Y+ LK NVD L LIQVGLT SD +GNLP  G+   +KF IW+FNFR+F++  D +A +SIELLR  GIDF++N E+G+D VRF ELMMSSG+V N+++SWVTFH  YDFGYLVK+LT + LP    +F  +L V+F   +YD+KH+M FC  L+GGL+R+A  + V
Sbjct:   13 REVWDYNLVEEFALIREIVDKFSYIAMDTEFPGVVLKP---VATFKYNNDL----NYRTLKENVDLLKLIQVGLTFSDENGNLPTCGT---DKFCIWQFNFREFNIGEDIYASESIELLRQCGIDFKKNIEKGIDVVRFGELMMSSGIVLNDAISWVTFHGGYDFGYLVKLLTCKELPLKQADFFKLLYVYF-PTVYDIKHLMTFCNGLFGGLNRLAELMGV 223          
BLAST of FC871440 vs. ExPASy Swiss-Prot
Match: CAF1B_ARATH (Probable CCR4-associated factor 1 homolog 2 OS=Arabidopsis thaliana GN=CAF1-2 PE=2 SV=1)

HSP 1 Score: 223.402 bits (568), Expect = 1.240e-57
Identity = 113/222 (50.90%), Postives = 153/222 (68.92%), Query Frame = 3
Query:  174 REVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRP-DVDPSTRPYFRQRKPSDHYKVLKSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDVATDAHAPDSIELLRLQGIDFERNREEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTRRSLPSGLDEFLTVLRVFFGNNIYDVKHIMRFCQSLYGGLDRVARTLDV 836
            REVW  NLE E  LI Q ID +P+++MDTEFPG+V +    +P+  PY    + +  Y  LK+NV+ L LIQ+GLTLSD  GNLP  G+  N + IW+FNFR+F+V +D  A DSIELLR   ID E+N E GVD+ RFAEL+M SG+V N+ + WVTFH  YDFGYL+K+L+ + LP  + +F   +  FF   +YD+K++M FC +LYGGL+++A  L V
Sbjct:   17 REVWNHNLEQEMALIEQSIDDFPYVAMDTEFPGIVCKTVTANPNPNPYSIHYEYN--YDTLKANVNMLKLIQLGLTLSDEKGNLPTCGT--NKQCIWQFNFREFNVISDMFALDSIELLRKSAIDLEKNNECGVDAKRFAELLMGSGVVLNDKIHWVTFHCGYDFGYLLKLLSGKELPEEISDFFDQMEKFF-PVVYDIKYLMGFCTNLYGGLEKIAELLGV 233          
BLAST of FC871440 vs. ExPASy Swiss-Prot
Match: CAF1_SCHPO (Poly(A) ribonuclease pop2 OS=Schizosaccharomyces pombe GN=caf1 PE=1 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 8.911e-48
Identity = 100/222 (45.05%), Postives = 144/222 (64.86%), Query Frame = 3
Query:  174 REVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRP-DVDPSTRPYFRQRKPSDHYKVLKSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDVATDAHAPDSIELLRLQGIDFERNREEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTRRSLPSGLDEFLTVLRVFFGNNIYDVKHIMRFCQSLYGGLDRVARTLDV 836
            R+VW++NL+ E  LI  +I+RYP +SMDTEFPG+V RP  V  S+  Y        HY+ L++NVD+L +IQ+GL LSD  GN P           W+FNF  F++  D +AP+SIELL   GIDF++++E G++   FAEL++ SGLV  E V+W+TFHS YDF YL+K +T+  LP+  +EF  +L ++F  N YD+K+IM+   +   GL  +A  L +
Sbjct:   23 RDVWSTNLQQEMNLIMSLIERYPVVSMDTEFPGVVARPLGVFKSSDDY--------HYQTLRANVDSLKIIQIGLALSDEEGNAPV------EACTWQFNFT-FNLQDDMYAPESIELLTKSGIDFKKHQEVGIEPADFAELLIGSGLVLQEEVTWITFHSGYDFAYLLKAMTQIPLPAEYEEFYKILCIYFPKN-YDIKYIMKSVLNNSKGLQDIADDLQI 228          
BLAST of FC871440 vs. ExPASy Swiss-Prot
Match: CNOT8_MOUSE (CCR4-NOT transcription complex subunit 8 OS=Mus musculus GN=Cnot8 PE=2 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 1.520e-47
Identity = 101/221 (45.70%), Postives = 147/221 (66.52%), Query Frame = 3
Query:  177 EVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDH-YKVLKSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDVATDAHAPDSIELLRLQGIDFERNREEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTRRSLPSGLDEFLTVLRVFFGNNIYDVKHIMRFCQSLYGGLDRVARTLDV 836
            EVWASNLE E   I +++  Y +I+MDTEFPG+V         RP    R   D+ Y++L+ NVD L +IQ+GLT ++  G  P   SG N    W+FNF+ F++  D ++ DSI+LL   G+ F+++ EEG+D++ FAEL+M+SG+V  ++V W++FHS YDFGY+VK+LT   LP    EF  +L +FF  +IYDVK++M+ C++L GGL  VA  LD+
Sbjct:   14 EVWASNLEEEMRKIREIVLSYSYIAMDTEFPGVV--------VRPIGEFRSSIDYQYQLLRCNVDLLKIIQLGLTFTNEKGEYP---SGINT---WQFNFK-FNLTEDMYSQDSIDLLANSGLQFQKHEEEGIDTLHFAELLMTSGVVLCDNVKWLSFHSGYDFGYMVKLLTDSRLPEEEHEFFHILNLFF-PSIYDVKYLMKSCKNLKGGLQEVADQLDL 218          
BLAST of FC871440 vs. ExPASy Swiss-Prot
Match: CNOT8_HUMAN (CCR4-NOT transcription complex subunit 8 OS=Homo sapiens GN=CNOT8 PE=1 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 1.520e-47
Identity = 101/221 (45.70%), Postives = 147/221 (66.52%), Query Frame = 3
Query:  177 EVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDH-YKVLKSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDVATDAHAPDSIELLRLQGIDFERNREEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTRRSLPSGLDEFLTVLRVFFGNNIYDVKHIMRFCQSLYGGLDRVARTLDV 836
            EVWASNLE E   I +++  Y +I+MDTEFPG+V         RP    R   D+ Y++L+ NVD L +IQ+GLT ++  G  P   SG N    W+FNF+ F++  D ++ DSI+LL   G+ F+++ EEG+D++ FAEL+M+SG+V  ++V W++FHS YDFGY+VK+LT   LP    EF  +L +FF  +IYDVK++M+ C++L GGL  VA  LD+
Sbjct:   14 EVWASNLEEEMRKIREIVLSYSYIAMDTEFPGVV--------VRPIGEFRSSIDYQYQLLRCNVDLLKIIQLGLTFTNEKGEYP---SGINT---WQFNFK-FNLTEDMYSQDSIDLLANSGLQFQKHEEEGIDTLHFAELLMTSGVVLCDNVKWLSFHSGYDFGYMVKLLTDSRLPEEEHEFFHILNLFF-PSIYDVKYLMKSCKNLKGGLQEVADQLDL 218          
BLAST of FC871440 vs. ExPASy Swiss-Prot
Match: CNOT7_MOUSE (CCR4-NOT transcription complex subunit 7 OS=Mus musculus GN=Cnot7 PE=1 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 1.985e-47
Identity = 102/221 (46.15%), Postives = 145/221 (65.61%), Query Frame = 3
Query:  177 EVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDH-YKVLKSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDVATDAHAPDSIELLRLQGIDFERNREEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTRRSLPSGLDEFLTVLRVFFGNNIYDVKHIMRFCQSLYGGLDRVARTLDV 836
            EVWA NL+ E + I QVI +Y +++MDTEFPG+V         RP    R  +D+ Y++L+ NVD L +IQ+GLT  +  G  P   S       W+FNF+ F++  D +A DSIELL   GI F+++ EEG+++  FAEL+M+SG+V  E V W++FHS YDFGYL+KILT  +LP    +F  +LR+FF   IYDVK++M+ C++L GGL  VA  L++
Sbjct:   14 EVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVV--------ARPIGEFRSNADYQYQLLRCNVDLLKIIQLGLTFMNEQGEYPPGTS------TWQFNFK-FNLTEDMYAQDSIELLTTSGIQFKKHEEEGIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEEELDFFEILRLFF-PVIYDVKYLMKSCKNLKGGLQEVAEQLEL 218          
The following BLAST results are available for this feature:
BLAST of FC871440 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
CAF1K_ARATH2.318e-8872.52Probable CCR4-associated factor 1 homolog 11 OS=Ar... [more]
CAF1I_ARATH7.456e-8772.07Probable CCR4-associated factor 1 homolog 9 OS=Ara... [more]
CAF1G_ARATH5.200e-6454.95Probable CCR4-associated factor 1 homolog 7 OS=Ara... [more]
CAF1F_ARATH1.015e-5950.90Probable CCR4-associated factor 1 homolog 6 OS=Ara... [more]
CAF1J_ARATH1.325e-5952.70Probable CCR4-associated factor 1 homolog 10 OS=Ar... [more]
CAF1B_ARATH1.240e-5750.90Probable CCR4-associated factor 1 homolog 2 OS=Ara... [more]
CAF1_SCHPO8.911e-4845.05Poly(A) ribonuclease pop2 OS=Schizosaccharomyces p... [more]
CNOT8_MOUSE1.520e-4745.70CCR4-NOT transcription complex subunit 8 OS=Mus mu... [more]
CNOT8_HUMAN1.520e-4745.70CCR4-NOT transcription complex subunit 8 OS=Homo s... [more]
CNOT7_MOUSE1.985e-4746.15CCR4-NOT transcription complex subunit 7 OS=Mus mu... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAK1AC04FM2 AbsCFruit1 Citrus sinensis cDNA clone KN0AAK1AC04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC871440 ID=FC871440; Name=FC871440; organism=Citrus sinensis; type=EST; length=837bp
CAACTCTCAAGCAACAGCAGTTACCAGCAACAGTAAAGACTTTCAAATCT
CACTTGCGAAGCGTCGAGCTGCAAGCTATTAGCTGACGATCATCACTCAT
CATGGGAGCTGGAGATTTTTCTACGGATTTAGATTCAAGCTCAAATTCCA
GCTCATCGAATTCGATTATAATACGCGAAGTCTGGGCGTCTAATTTGGAA
TCCGAATTCGAACTCATCAGCCAAGTCATCGATCGGTACCCTTTTATTTC
CATGGACACCGAATTCCCCGGTCTTGTCTACCGACCCGATGTGGACCCCT
CCACCAGGCCTTACTTCCGTCAACGCAAGCCGTCCGATCACTACAAGGTT
TTGAAATCCAACGTCGACGCCTTGAACTTGATCCAGGTGGGCCTCACTCT
CTCTGACTCCTCCGGTAACTTGCCGGATTTGGGCTCCGGGGGCAACAATA
AATTCATCTGGGAGTTCAACTTCCGGGACTTCGATGTCGCGACTGACGCC
CACGCGCCGGATTCGATAGAGCTTCTGAGACTGCAGGGGATTGACTTTGA
GCGCAACAGGGAGGAAGGCGTTGACTCGGTTCGGTTCGCCGAGTTGATGA
TGTCGTCGGGACTCGTCTGTAACGAGTCGGTGAGTTGGGTCACGTTCCAC
AGCGCGTACGATTTCGGGTACCTGGTTAAGATCCTCACGCGCCGGAGCTT
GCCCAGTGGCCTAGACGAGTTTTTGACGGTCCTCAGGGTGTTTTTCGGTA
ACAACATTTATGACGTCAAACACATTATGCGGTTCTGTCAGAGCTTGTAC
GGTGGGCTGGACCGAGTGGCTCGGACGTTGGATGTGA
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