EY679883

Overview
NameEY679883
Unique NameEY679883
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length873
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY679883 vs. ExPASy Swiss-Prot
Match: GLYN_FLAPR (Serine hydroxymethyltransferase 2, mitochondrial OS=Flaveria pringlei PE=2 SV=1)

HSP 1 Score: 394.43 bits (1012), Expect = 4.319e-109
Identity = 196/217 (90.32%), Postives = 206/217 (94.93%), Query Frame = 2
Query:    2 KGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKSETQGTKLKDFVATTQSANFQSKIAKLRHDVEEYAKQFPTIGFEKETMKYKN 652
            KGVKE+NKQGKEV YDYE+KINQAVFPGLQGGPHNHTITGLAVALKQATT EYKAYQEQV+SNC+KFA+TL++ GYELVSGGTENHLVLVNLKNK IDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAY FD AVKLAVKIK E QGTKLKDFVA  QS+ FQS+I+KLRHDVEEYAKQFPTIGFEKETMKYKN
Sbjct:  301 KGVKEVNKQGKEVLYDYEDKINQAVFPGLQGGPHNHTITGLAVALKQATTAEYKAYQEQVMSNCAKFAETLVKSGYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYLFDLAVKLAVKIKGEAQGTKLKDFVAAMQSSAFQSEISKLRHDVEEYAKQFPTIGFEKETMKYKN 517          
BLAST of EY679883 vs. ExPASy Swiss-Prot
Match: GLYM_SOLTU (Serine hydroxymethyltransferase, mitochondrial OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 387.111 bits (993), Expect = 6.895e-107
Identity = 195/218 (89.45%), Postives = 207/218 (94.95%), Query Frame = 2
Query:    2 KGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKSETQGTKLKDFVATTQ-SANFQSKIAKLRHDVEEYAKQFPTIGFEKETMKYKN 652
            KGVKE+NKQGKEVFYDYE+KINQAVFPGLQGGPHNHTITGLAVALKQATTPEY+AYQEQVLSN SKFAQ L E GYELVSGGT+NHLVLVN+KNK IDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGF+EEDF KVA FFDAAVK+AVK+K+ETQGTKLKDFVAT + SA  +S+IAKLRHDVEEYAKQFPTIGFEKETMKYKN
Sbjct:  301 KGVKEVNKQGKEVFYDYEDKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYRAYQEQVLSNSSKFAQALGEKGYELVSGGTDNHLVLVNMKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFLEEDFVKVADFFDAAVKIAVKVKAETQGTKLKDFVATLESSAPIKSEIAKLRHDVEEYAKQFPTIGFEKETMKYKN 518          
BLAST of EY679883 vs. ExPASy Swiss-Prot
Match: GLYM_FLAPR (Serine hydroxymethyltransferase 1, mitochondrial OS=Flaveria pringlei PE=2 SV=1)

HSP 1 Score: 386.341 bits (991), Expect = 1.176e-106
Identity = 191/217 (88.02%), Postives = 205/217 (94.47%), Query Frame = 2
Query:    2 KGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKSETQGTKLKDFVATTQSANFQSKIAKLRHDVEEYAKQFPTIGFEKETMKYKN 652
            KG+KE+NKQGKEVFYDYE+KINQAVFPGLQGGPHNHTITGLAVALKQATT EYKAYQEQV+SN +KFA+TL++ GYELVSGGTENHLVLVNLKNK IDGS+VEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFD AVKLAVKIK E +GTKLKDFV   +S+  QS+I+KLRHDVEEYAKQFPTIGFEKETMKYKN
Sbjct:  301 KGLKEVNKQGKEVFYDYEDKINQAVFPGLQGGPHNHTITGLAVALKQATTAEYKAYQEQVMSNSAKFAETLVKSGYELVSGGTENHLVLVNLKNKGIDGSKVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDLAVKLAVKIKGEAKGTKLKDFVTAMESSAIQSEISKLRHDVEEYAKQFPTIGFEKETMKYKN 517          
BLAST of EY679883 vs. ExPASy Swiss-Prot
Match: GLYM_ARATH (Serine hydroxymethyltransferase, mitochondrial OS=Arabidopsis thaliana GN=SHM1 PE=1 SV=1)

HSP 1 Score: 372.474 bits (955), Expect = 1.758e-102
Identity = 187/218 (85.78%), Postives = 204/218 (93.58%), Query Frame = 2
Query:    2 KGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKSETQGTKLKDFVATTQSAN-FQSKIAKLRHDVEEYAKQFPTIGFEKETMKYKN 652
            KGVKEINKQGKEV YD+E+KINQAVFPGLQGGPHNHTITGLAVALKQATT EYKAYQEQVLSN +KFAQTL+E GYELVSGGT+NHLVLVNLK K IDGSRVEKVLEAVHIA+NKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVA +FD AV +A+K+KSE QGTKLKDFV+  +S++  QS+IAKLRH+VEE+AKQFPTIGFEKETMKYKN
Sbjct:  300 KGVKEINKQGKEVLYDFEDKINQAVFPGLQGGPHNHTITGLAVALKQATTSEYKAYQEQVLSNSAKFAQTLMERGYELVSGGTDNHLVLVNLKPKGIDGSRVEKVLEAVHIASNKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAEYFDKAVTIALKVKSEAQGTKLKDFVSAMESSSTIQSEIAKLRHEVEEFAKQFPTIGFEKETMKYKN 517          
BLAST of EY679883 vs. ExPASy Swiss-Prot
Match: GLYM_PEA (Serine hydroxymethyltransferase, mitochondrial OS=Pisum sativum PE=1 SV=1)

HSP 1 Score: 367.466 bits (942), Expect = 5.654e-101
Identity = 182/216 (84.26%), Postives = 202/216 (93.52%), Query Frame = 2
Query:    2 KGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKSETQGTKLKDFVATTQSANF-QSKIAKLRHDVEEYAKQFPTIGFEKETMKY 646
            KG+KE+NKQGKEVFYDYE+KINQAVFPGLQGGPHNHTITGLAVALKQATTPEY+AYQEQVLSN SKFA+ L E GY+LVSGGTENHLVLVNLKNK IDGSRVEKVLE VHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDF KVA +FDAAV LA+K+K+E++GTKLKDFV   Q++++ QS+I+KL+HDVEE+AKQFPTIGFEK TMKY
Sbjct:  301 KGLKEVNKQGKEVFYDYEDKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYRAYQEQVLSNSSKFAKALSEKGYDLVSGGTENHLVLVNLKNKGIDGSRVEKVLELVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFVKVAEYFDAAVSLALKVKAESKGTKLKDFVEALQTSSYVQSEISKLKHDVEEFAKQFPTIGFEKATMKY 516          
BLAST of EY679883 vs. ExPASy Swiss-Prot
Match: GLYC_HUMAN (Serine hydroxymethyltransferase, cytosolic OS=Homo sapiens GN=SHMT1 PE=1 SV=1)

HSP 1 Score: 226.868 bits (577), Expect = 1.193e-58
Identity = 112/209 (53.59%), Postives = 150/209 (71.77%), Query Frame = 2
Query:    2 KGVKEIN-KQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKSET-QGTKLKDFVATTQSANFQSKIAKLRHDVEEYAKQFPTIG 622
            KGVK ++ K GKE+ Y+ E  IN AVFPGLQGGPHNH I G+AVALKQA T E+K YQ QV++NC   ++ L E+GY++V+GG++NHL+LV+L++K  DG R EKVLEA  IA NKNT PGD SA+ P G+R+GTPALTSRG +E+DF KVA+F    ++L ++I+S+T     LK+F        +Q+ +  LR +VE +A  FP  G
Sbjct:  271 KGVKSVDPKTGKEILYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTLEFKVYQHQVVANCRALSEALTELGYKIVTGGSDNHLILVDLRSKGTDGGRAEKVLEACSIACNKNTCPGDRSALRPSGLRLGTPALTSRGLLEKDFQKVAHFIHRGIELTLQIQSDTGVRATLKEFKERLAGDKYQAAVQALREEVESFASLFPLPG 479          
BLAST of EY679883 vs. ExPASy Swiss-Prot
Match: GLYM_BOVIN (Serine hydroxymethyltransferase, mitochondrial OS=Bos taurus GN=SHMT2 PE=2 SV=1)

HSP 1 Score: 224.172 bits (570), Expect = 7.730e-58
Identity = 114/211 (54.03%), Postives = 151/211 (71.56%), Query Frame = 2
Query:    2 KGVKEIN-KQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKSETQGTKLKDFVA-TTQSANFQSKIAKLRHDVEEYAKQFPTIGFE 628
            KGV+ ++ K G+E+ Y +E++IN AVFP LQGGPHNH I  +AVALKQA TP ++ Y  Q+L N    A  LLE GY LVSGGT+NHLVLV+L+ K +DG+R E+VLE V I ANKNT PGD SA+ PGG+R+G PALTSRGF+E+DF KV  F D  V + +++KS+T  TKL+DF +   +      ++A LR  VE++A+ FP  GF+
Sbjct:  294 KGVQAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQACTPMFREYSLQILKNAQAMANALLERGYSLVSGGTDNHLVLVDLRPKGLDGARAERVLELVSITANKNTCPGDRSAITPGGLRLGAPALTSRGFLEDDFRKVVGFIDEGVNIGLEVKSKT--TKLQDFKSFLLKDPETSHQLADLRQRVEQFARAFPMPGFD 502          
BLAST of EY679883 vs. ExPASy Swiss-Prot
Match: GLYM_CANAL (Serine hydroxymethyltransferase, mitochondrial OS=Candida albicans GN=SHM1 PE=3 SV=1)

HSP 1 Score: 223.787 bits (569), Expect = 1.010e-57
Identity = 108/208 (51.92%), Postives = 153/208 (73.56%), Query Frame = 2
Query:    2 KGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKSETQGTKLKDFVATTQS-ANFQSKIAKLRHDVEEYAKQFPTIG 622
            KG++++  +GKE+ Y+ E KIN  VFPG QGGPHNHTI+ LAVALKQ T PEY  YQ++V+SN   FA  L+  G++LVS GT+ HL+LV+L+++ IDG+RVE VLE  +IAANKNTVPGDVSA+ P G+R+GTPA+T+RGF  E+F KVA F D AV +A+++K++ QG   K+ +A+ +  A+   K+ +L  +V  +  ++P  G
Sbjct:  284 KGIRKVTTKGKEIPYELERKINFLVFPGHQGGPHNHTISALAVALKQCTEPEYVKYQQEVVSNAKHFADALVSKGFKLVSDGTDTHLILVDLRSRNIDGARVEAVLERANIAANKNTVPGDVSALFPSGLRVGTPAMTTRGFGPEEFDKVAEFIDQAVNIAIELKAQEQGKVPKELLASFKKLADESDKVKQLDKEVVSWVSKYPVPG 491          
BLAST of EY679883 vs. ExPASy Swiss-Prot
Match: GLYC_PONAB (Serine hydroxymethyltransferase, cytosolic OS=Pongo abelii GN=SHMT1 PE=2 SV=1)

HSP 1 Score: 223.787 bits (569), Expect = 1.010e-57
Identity = 111/209 (53.11%), Postives = 148/209 (70.81%), Query Frame = 2
Query:    2 KGVKEIN-KQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKSET-QGTKLKDFVATTQSANFQSKIAKLRHDVEEYAKQFPTIG 622
            KGV+ ++ K GKE+ Y+ E  IN AVFPGLQGGPHNH I G+AVALKQA T E+K YQ QV++NC   ++ L E+GY++V+GG++NHL+LV+L++K  DG R EKVLEA  IA NKNT PGD SA+ P G+R+GTPALTSRG +E+DF KVA+F    ++L ++I+S+T     LK+F        +Q  +  LR  VE +A  FP  G
Sbjct:  271 KGVQSVDPKTGKEILYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTLEFKVYQHQVVANCRALSEALTELGYKIVTGGSDNHLILVDLRSKGTDGGRAEKVLEACSIACNKNTCPGDRSALRPSGLRLGTPALTSRGLLEKDFQKVAHFIHRGIELTLQIQSDTGVRATLKEFKERLAGDKYQGAVQALREKVESFASLFPLPG 479          
BLAST of EY679883 vs. ExPASy Swiss-Prot
Match: GLYM_YEAST (Serine hydroxymethyltransferase, mitochondrial OS=Saccharomyces cerevisiae GN=SHM1 PE=1 SV=2)

HSP 1 Score: 221.476 bits (563), Expect = 5.011e-57
Identity = 106/210 (50.48%), Postives = 154/210 (73.33%), Query Frame = 2
Query:    2 KGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKSETQGTKL---KDFVATTQSANFQSKIAKLRHDVEEYAKQFPTIG 622
            KG+K + K+GKE+ Y+ E+KIN +VFPG QGGPHNHTI  +AVALKQA +PE+K YQ++++ N   FAQ L +MGY+LVSGGT+NHL++++L   ++DG+RVE +L A++IAANKNT+PGD SA+ P G+R+GTPA+T+RGF  E+F++VA + D+AVKLA  +K+    TKL          +  N  S++A L  ++ ++  Q+P  G
Sbjct:  279 KGIKSVTKKGKEIPYELEKKINFSVFPGHQGGPHNHTIGAMAVALKQAMSPEFKEYQQKIVDNSKWFAQELTKMGYKLVSGGTDNHLIVIDLSGTQVDGARVETILSALNIAANKNTIPGDKSALFPSGLRIGTPAMTTRGFGREEFSQVAKYIDSAVKLAENLKTLEPTTKLDARSRLNEFKKLCNESSEVAALSGEISKWVGQYPVPG 488          
The following BLAST results are available for this feature:
BLAST of EY679883 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYN_FLAPR4.319e-10990.32Serine hydroxymethyltransferase 2, mitochondrial O... [more]
GLYM_SOLTU6.895e-10789.45Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYM_FLAPR1.176e-10688.02Serine hydroxymethyltransferase 1, mitochondrial O... [more]
GLYM_ARATH1.758e-10285.78Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYM_PEA5.654e-10184.26Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYC_HUMAN1.193e-5853.59Serine hydroxymethyltransferase, cytosolic OS=Homo... [more]
GLYM_BOVIN7.730e-5854.03Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYM_CANAL1.010e-5751.92Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYC_PONAB1.010e-5753.11Serine hydroxymethyltransferase, cytosolic OS=Pong... [more]
GLYM_YEAST5.011e-5750.48Serine hydroxymethyltransferase, mitochondrial OS=... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-650-005-A11-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY679883 ID=EY679883; Name=EY679883; organism=Citrus sinensis; type=EST; length=873bp
GAAGGGAGTGAAAGAGATTAACAAACAAGGGAAGGAGGTGTTTTATGATT
ATGAAGAAAAAATAAATCAAGCTGTCTTTCCTGGACTCCAAGGTGGCCCA
CACAACCACACAATTACTGGTTTAGCAGTTGCCTTGAAACAGGCCACTAC
TCCAGAGTATAAAGCCTATCAAGAGCAAGTTCTGAGCAATTGCTCGAAAT
TTGCACAGACTCTGCTCGAGATGGGCTATGAACTTGTTTCTGGTGGAACT
GAGAACCATCTAGTGTTGGTGAATTTGAAAAACAAGAGAATTGATGGTTC
CAGAGTTGAAAAAGTGTTGGAAGCTGTTCATATTGCAGCCAACAAAAACA
CTGTTCCTGGGGATGTGTCAGCCATGGTTCCAGGTGGCATCAGGATGGGA
ACTCCGGCTCTTACTTCTAGGGGATTTGTTGAGGAGGATTTTGCCAAGGT
AGCATATTTCTTTGATGCTGCTGTGAAGTTGGCTGTGAAGATCAAGTCTG
AAACTCAAGGAACAAAGTTGAAAGATTTCGTGGCCACAACACAGTCCGCT
AACTTCCAATCCAAGATTGCGAAACTTCGCCATGATGTTGAGGAGTATGC
AAAGCAGTTCCCCACAATTGGGTTTGAAAAGGAAACCATGAAGTACAAAA
ACTGAAAAAAAAACCCCACTGTACTAAAGCACCAAAAACCCGCCCGGATG
ACCTTTTTTTAACCCAAGCCGACAAAGGGATAAATGGTACTTTAGGATTA
TGAACCTTGGAATAACTTTCCAACCCTGGGATTTGGGCCCTTTTTTGAAA
ACCCATAACCACCAAACCTTGGTTTTTAAATCCAATTAATGGTTAAAAAG
AGAACCCTGGGTTTTTACGGGAG
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