FC871386

Overview
NameFC871386
Unique NameFC871386
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length508
Libraries
Library NameType
AbsCFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10252 contig Csv1_Contig10252:348..855. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC871386 vs. ExPASy Swiss-Prot
Match: IMP3_MOUSE (U3 small nucleolar ribonucleoprotein protein IMP3 OS=Mus musculus GN=Imp3 PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 1.375e-25
Identity = 50/80 (62.50%), Postives = 67/80 (83.75%), Query Frame = 1
Query:   22 SMSFGCRRRLATILVRMKFAEHLKEAETYIEQGHIRVGPETATDPAFLATRNMEDFITWVDTSKIKRKVLEYNDKVDDYD 261
            S S  CRRRL T+L++++ A+HL+ A  ++EQGH+RVGP+  TDPAFL TR+MEDF+TWVD+SKIKR VLEYN++ DD+D
Sbjct:  102 SASSFCRRRLPTLLLKLRMAQHLQAAVAFVEQGHVRVGPDVVTDPAFLVTRSMEDFVTWVDSSKIKRHVLEYNEERDDFD 181          
BLAST of FC871386 vs. ExPASy Swiss-Prot
Match: IMP3_HUMAN (U3 small nucleolar ribonucleoprotein protein IMP3 OS=Homo sapiens GN=IMP3 PE=1 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 1.796e-25
Identity = 48/75 (64.00%), Postives = 65/75 (86.67%), Query Frame = 1
Query:   37 CRRRLATILVRMKFAEHLKEAETYIEQGHIRVGPETATDPAFLATRNMEDFITWVDTSKIKRKVLEYNDKVDDYD 261
            CRRRL T+L++++ A+HL+ A  ++EQGH+RVGP+  TDPAFL TR+MEDF+TWVD+SKIKR VLEYN++ DD+D
Sbjct:  107 CRRRLPTVLLKLRMAQHLQAAVAFVEQGHVRVGPDVVTDPAFLVTRSMEDFVTWVDSSKIKRHVLEYNEERDDFD 181          
BLAST of FC871386 vs. ExPASy Swiss-Prot
Match: IMP3_BOVIN (U3 small nucleolar ribonucleoprotein protein IMP3 OS=Bos taurus GN=IMP3 PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 1.796e-25
Identity = 48/75 (64.00%), Postives = 65/75 (86.67%), Query Frame = 1
Query:   37 CRRRLATILVRMKFAEHLKEAETYIEQGHIRVGPETATDPAFLATRNMEDFITWVDTSKIKRKVLEYNDKVDDYD 261
            CRRRL T+L++++ A+HL+ A  ++EQGH+RVGP+  TDPAFL TR+MEDF+TWVD+SKIKR VLEYN++ DD+D
Sbjct:  107 CRRRLPTVLLKLRMAQHLQAAVAFVEQGHVRVGPDVVTDPAFLVTRSMEDFVTWVDSSKIKRHVLEYNEERDDFD 181          
BLAST of FC871386 vs. ExPASy Swiss-Prot
Match: IMP3_SCHPO (U3 small nucleolar ribonucleoprotein protein imp3 OS=Schizosaccharomyces pombe GN=imp3 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 4.890e-23
Identity = 46/83 (55.42%), Postives = 64/83 (77.11%), Query Frame = 1
Query:   19 ASMSFGCRRRLATILVRMKFAEHLKEAETYIEQGHIRVGPETATDPAFLATRNMEDFITWVDTSKIKRKVLEYNDKVDDYDAM 267
            A++S  CRRRL  I+ +++ ++ + EA   IEQGH+RVGP   TDPA+L TR++EDF+TW DTSKIKR + +YNDK+DDYD +
Sbjct:  101 ANVSAICRRRLPVIMCKLRMSQVVSEATRLIEQGHVRVGPHVITDPAYLVTRSLEDFVTWTDTSKIKRTIAKYNDKLDDYDLL 183          
BLAST of FC871386 vs. ExPASy Swiss-Prot
Match: IMP3_YEAST (U3 small nucleolar ribonucleoprotein protein IMP3 OS=Saccharomyces cerevisiae GN=IMP3 PE=1 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.204e-21
Identity = 43/75 (57.33%), Postives = 59/75 (78.67%), Query Frame = 1
Query:   37 CRRRLATILVRMKFAEHLKEAETYIEQGHIRVGPETATDPAFLATRNMEDFITWVDTSKIKRKVLEYNDKVDDYD 261
            CRRRL  I+ R+K AE +++A  +IEQGH+RVGP    DPA+L TRNMED++TWVD SKIK+ +L Y +++DD+D
Sbjct:  107 CRRRLPVIMHRLKMAETIQDAVKFIEQGHVRVGPNLINDPAYLVTRNMEDYVTWVDNSKIKKTLLRYRNQIDDFD 181          
BLAST of FC871386 vs. ExPASy Swiss-Prot
Match: YS4L_PNECA (Putative 40S ribosomal protein S4-like (Fragment) OS=Pneumocystis carinii GN=RBP PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.378e-17
Identity = 38/67 (56.72%), Postives = 50/67 (74.63%), Query Frame = 1
Query:   22 SMSFGCRRRLATILVRMKFAEHLKEAETYIEQGHIRVGPETATDPAFLATRNMEDFITWVDTSKIKR 222
            ++S  CRRRL  ++ R+K  E +  +  Y+E GH+RVGPE  TDPAF  TRNMEDF+TWVD+SKI+R
Sbjct:  102 TVSAFCRRRLPVVMCRLKMCETVSTSVKYVEHGHVRVGPEVITDPAFFVTRNMEDFVTWVDSSKIRR 168          
BLAST of FC871386 vs. ExPASy Swiss-Prot
Match: YS4L_CAEEL (Putative 40S ribosomal protein S4-like OS=Caenorhabditis elegans GN=C48B6.2 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 4.433e-16
Identity = 36/77 (46.75%), Postives = 52/77 (67.53%), Query Frame = 1
Query:   40 RRRLATILVRMKFAEHLKEAETYIEQGHIRVGPETATDPAFLATRNMEDFITWVDTSKIKRKVLEYNDKVDDYDAMN 270
            RRRL  ++  +   E +K A   +EQGH+R+G +  TDPAF+ TR+ ED ITW   SKIK+ V++YN+  DD+D M+
Sbjct:  107 RRRLPVVMRNIGMCESVKTASDLVEQGHVRIGTKLVTDPAFMVTRSSEDMITWTKASKIKKHVMDYNNTRDDFDLMD 183          
The following BLAST results are available for this feature:
BLAST of FC871386 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
IMP3_MOUSE1.375e-2562.50U3 small nucleolar ribonucleoprotein protein IMP3 ... [more]
IMP3_HUMAN1.796e-2564.00U3 small nucleolar ribonucleoprotein protein IMP3 ... [more]
IMP3_BOVIN1.796e-2564.00U3 small nucleolar ribonucleoprotein protein IMP3 ... [more]
IMP3_SCHPO4.890e-2355.42U3 small nucleolar ribonucleoprotein protein imp3 ... [more]
IMP3_YEAST1.204e-2157.33U3 small nucleolar ribonucleoprotein protein IMP3 ... [more]
YS4L_PNECA1.378e-1756.72Putative 40S ribosomal protein S4-like (Fragment) ... [more]
YS4L_CAEEL4.433e-1646.75Putative 40S ribosomal protein S4-like OS=Caenorha... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAK2CE10FM1 AbsCFruit1 Citrus sinensis cDNA clone KN0AAK2CE10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC871386 ID=FC871386; Name=FC871386; organism=Citrus sinensis; type=EST; length=508bp
CTTTTTCTTCCCTTTTGAGCGAGCATGTCTTTTGGTTGCAGACGCAGGCT
TGCCACCATTTTGGTGCGGATGAAGTTTGCTGAGCACCTGAAAGAAGCTG
AGACATATATTGAACAGGGACACATTCGAGTCGGACCGGAGACAGCTACA
GACCCTGCATTCCTCGCGACCAGGAATATGGAAGACTTTATTACATGGGT
AGATACATCCAAGATAAAGAGAAAGGTCTTGGAATACAATGATAAGGTGG
ATGATTATGATGCAATGAACTGAAGACCCATTAAGATCTGTGTTTTCTTT
TGTTTCTGAACATTTTTGTTTGAATTTCATGTTGTAGGATGATCATATGG
GCAATTAAAAGTTATCTTCTTGTCAATTCTCTGTTGCCAGAGATAGTGAG
CATCCGAGTAGCATTCCCAAGAAAAGTTTGTATTCTGCTTGTACATAAAA
CACGATTGGACCATCACCAGCGAAGCTCGTGACATGATCATTGACTTCAC
TCATATGG
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