FC871386
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC871386 vs. ExPASy Swiss-Prot
Match: IMP3_MOUSE (U3 small nucleolar ribonucleoprotein protein IMP3 OS=Mus musculus GN=Imp3 PE=2 SV=1) HSP 1 Score: 115.546 bits (288), Expect = 1.375e-25 Identity = 50/80 (62.50%), Postives = 67/80 (83.75%), Query Frame = 1 Query: 22 SMSFGCRRRLATILVRMKFAEHLKEAETYIEQGHIRVGPETATDPAFLATRNMEDFITWVDTSKIKRKVLEYNDKVDDYD 261 S S CRRRL T+L++++ A+HL+ A ++EQGH+RVGP+ TDPAFL TR+MEDF+TWVD+SKIKR VLEYN++ DD+D Sbjct: 102 SASSFCRRRLPTLLLKLRMAQHLQAAVAFVEQGHVRVGPDVVTDPAFLVTRSMEDFVTWVDSSKIKRHVLEYNEERDDFD 181
BLAST of FC871386 vs. ExPASy Swiss-Prot
Match: IMP3_HUMAN (U3 small nucleolar ribonucleoprotein protein IMP3 OS=Homo sapiens GN=IMP3 PE=1 SV=1) HSP 1 Score: 115.161 bits (287), Expect = 1.796e-25 Identity = 48/75 (64.00%), Postives = 65/75 (86.67%), Query Frame = 1 Query: 37 CRRRLATILVRMKFAEHLKEAETYIEQGHIRVGPETATDPAFLATRNMEDFITWVDTSKIKRKVLEYNDKVDDYD 261 CRRRL T+L++++ A+HL+ A ++EQGH+RVGP+ TDPAFL TR+MEDF+TWVD+SKIKR VLEYN++ DD+D Sbjct: 107 CRRRLPTVLLKLRMAQHLQAAVAFVEQGHVRVGPDVVTDPAFLVTRSMEDFVTWVDSSKIKRHVLEYNEERDDFD 181
BLAST of FC871386 vs. ExPASy Swiss-Prot
Match: IMP3_BOVIN (U3 small nucleolar ribonucleoprotein protein IMP3 OS=Bos taurus GN=IMP3 PE=2 SV=1) HSP 1 Score: 115.161 bits (287), Expect = 1.796e-25 Identity = 48/75 (64.00%), Postives = 65/75 (86.67%), Query Frame = 1 Query: 37 CRRRLATILVRMKFAEHLKEAETYIEQGHIRVGPETATDPAFLATRNMEDFITWVDTSKIKRKVLEYNDKVDDYD 261 CRRRL T+L++++ A+HL+ A ++EQGH+RVGP+ TDPAFL TR+MEDF+TWVD+SKIKR VLEYN++ DD+D Sbjct: 107 CRRRLPTVLLKLRMAQHLQAAVAFVEQGHVRVGPDVVTDPAFLVTRSMEDFVTWVDSSKIKRHVLEYNEERDDFD 181
BLAST of FC871386 vs. ExPASy Swiss-Prot
Match: IMP3_SCHPO (U3 small nucleolar ribonucleoprotein protein imp3 OS=Schizosaccharomyces pombe GN=imp3 PE=2 SV=1) HSP 1 Score: 107.071 bits (266), Expect = 4.890e-23 Identity = 46/83 (55.42%), Postives = 64/83 (77.11%), Query Frame = 1 Query: 19 ASMSFGCRRRLATILVRMKFAEHLKEAETYIEQGHIRVGPETATDPAFLATRNMEDFITWVDTSKIKRKVLEYNDKVDDYDAM 267 A++S CRRRL I+ +++ ++ + EA IEQGH+RVGP TDPA+L TR++EDF+TW DTSKIKR + +YNDK+DDYD + Sbjct: 101 ANVSAICRRRLPVIMCKLRMSQVVSEATRLIEQGHVRVGPHVITDPAYLVTRSLEDFVTWTDTSKIKRTIAKYNDKLDDYDLL 183
BLAST of FC871386 vs. ExPASy Swiss-Prot
Match: IMP3_YEAST (U3 small nucleolar ribonucleoprotein protein IMP3 OS=Saccharomyces cerevisiae GN=IMP3 PE=1 SV=1) HSP 1 Score: 102.449 bits (254), Expect = 1.204e-21 Identity = 43/75 (57.33%), Postives = 59/75 (78.67%), Query Frame = 1 Query: 37 CRRRLATILVRMKFAEHLKEAETYIEQGHIRVGPETATDPAFLATRNMEDFITWVDTSKIKRKVLEYNDKVDDYD 261 CRRRL I+ R+K AE +++A +IEQGH+RVGP DPA+L TRNMED++TWVD SKIK+ +L Y +++DD+D Sbjct: 107 CRRRLPVIMHRLKMAETIQDAVKFIEQGHVRVGPNLINDPAYLVTRNMEDYVTWVDNSKIKKTLLRYRNQIDDFD 181
BLAST of FC871386 vs. ExPASy Swiss-Prot
Match: YS4L_PNECA (Putative 40S ribosomal protein S4-like (Fragment) OS=Pneumocystis carinii GN=RBP PE=3 SV=1) HSP 1 Score: 88.9669 bits (219), Expect = 1.378e-17 Identity = 38/67 (56.72%), Postives = 50/67 (74.63%), Query Frame = 1 Query: 22 SMSFGCRRRLATILVRMKFAEHLKEAETYIEQGHIRVGPETATDPAFLATRNMEDFITWVDTSKIKR 222 ++S CRRRL ++ R+K E + + Y+E GH+RVGPE TDPAF TRNMEDF+TWVD+SKI+R Sbjct: 102 TVSAFCRRRLPVVMCRLKMCETVSTSVKYVEHGHVRVGPEVITDPAFFVTRNMEDFVTWVDSSKIRR 168
BLAST of FC871386 vs. ExPASy Swiss-Prot
Match: YS4L_CAEEL (Putative 40S ribosomal protein S4-like OS=Caenorhabditis elegans GN=C48B6.2 PE=2 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 4.433e-16 Identity = 36/77 (46.75%), Postives = 52/77 (67.53%), Query Frame = 1 Query: 40 RRRLATILVRMKFAEHLKEAETYIEQGHIRVGPETATDPAFLATRNMEDFITWVDTSKIKRKVLEYNDKVDDYDAMN 270 RRRL ++ + E +K A +EQGH+R+G + TDPAF+ TR+ ED ITW SKIK+ V++YN+ DD+D M+ Sbjct: 107 RRRLPVVMRNIGMCESVKTASDLVEQGHVRIGTKLVTDPAFMVTRSSEDMITWTKASKIKKHVMDYNNTRDDFDLMD 183 The following BLAST results are available for this feature:
BLAST of FC871386 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 7
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >FC871386 ID=FC871386; Name=FC871386; organism=Citrus sinensis; type=EST; length=508bpback to top |