EY715970

Overview
NameEY715970
Unique NameEY715970
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length794
Libraries
Library NameType
Sweet orange fruit, development stadium (3 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY715970 vs. ExPASy Swiss-Prot
Match: SRF8_ARATH (Protein STRUBBELIG-RECEPTOR FAMILY 8 OS=Arabidopsis thaliana GN=SRF8 PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 2.188e-28
Identity = 74/186 (39.78%), Postives = 98/186 (52.69%), Query Frame = 3 
Query:    9 PRELISIRTFIYDGNSFDNGXXXXXXXXXXXXXGRSHNNXXXXXXXXXXXXXXXXXXDKELPAGAXXXXXXXXXXXXXXXXXXXYFCIRKNRRKVSGA-RSSAGSFPVSTNNMNTEMHEQRVKSVAAVTDLTPPPAEKLVIERVARSGSLEKIKSPITATSYTVASLQTATNSFSQESLIADGHMG 563
            P+EL SI+T IYDGNSFDN                S +                    K L  G                    Y C+ K +RKV G+ R+S  S P+S      E+ EQRVKSVA+V DL   PAEK+ ++RV ++GS+ +I+SPITA+ YTV+SLQ ATNSFSQE++I +G +G
Sbjct:  230 PKELSSIQTLIYDGNSFDNVPASPQPERPGKKETPSGSKKPKIGSEEKSSDSG-----KGLSGGVVTGIVFGSLFVAGIIALVLYLCLHKKKRKVRGSTRASQRSLPLSGT---PEVQEQRVKSVASVADLKSSPAEKVTVDRVMKNGSISRIRSPITASQYTVSSLQVATNSFSQENIIGEGSLG 407

HSP 2 Score: 29.6462 bits (65), Expect = 2.188e-28
Identity = 16/44 (36.36%), Postives = 23/44 (52.27%), Query Frame = 2 
Query:  554 SHGRVYRAQFANGKIKACR*TQPATRNLMSMTSTMSVNATAPRI 685
            S GRVYRA+F NGKI A +    A  +L    + +   +   R+
Sbjct:  405 SLGRVYRAEFPNGKIMAIKKIDNAALSLQEEDNFLEAVSNMSRL 448
The following BLAST results are available for this feature:
BLAST of EY715970 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
SRF8_ARATH2.188e-2839.78Protein STRUBBELIG-RECEPTOR FAMILY 8 OS=Arabidopsi... [more]
back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-702-060-H05-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY715970 ID=EY715970; Name=EY715970; organism=Citrus sinensis; type=EST; length=794bp
CCACGCGTCCGCGGGAACTCATTTCAATCCGGACATTTATATATGACGGA
AATTCTTTTGACAATGGTCCTGCTCCACCACCTCCGCCATCTACTGCACC
TCCCTCTGGTAGATCTCACAATAATCGAAGTCATCGACAAGGCTCACATT
CACCTTCAGGCAGCCAGTCATCCAGTTCAGACAAGGAATTGCCAGCTGGA
GCTATTGTCGGCATAGTTCTGGGTGCTGTGTTTTTGGTTGCGCTGGCGCT
ACTTGCCCTTTATTTTTGCATTCGGAAGAATAGAAGAAAAGTAAGTGGTG
CAAGGAGTTCTGCAGGAAGTTTCCCTGTCAGCACGAATAACATGAATACC
GAGATGCATGAGCAGCGGGTAAAAAGTGTAGCCGCTGTCACTGATCTGAC
ACCTCCACCTGCTGAAAAGTTGGTGATTGAGAGGGTGGCAAGAAGTGGAT
CCTTAGAGAAAATAAAGTCACCTATAACTGCTACTTCATATACCGTTGCT
TCTCTCCAAACAGCTACAAATAGCTTTAGTCAAGAATCTCTTATTGCTGA
TGGTCACATGGGCGTGTTTACAGAGCACAGTTTGCTAATGGGAAGATCAA
GGCGTGTAGGTAAACACAGCCTGCTACGAGAAATCTGATGTCAATGACTA
GCACAATGTCTGTGAATGCAACTGCACCTCGTATAATGATGACCAGATCG
CTGTAAACCAACTATGAGCCTATGCAGCGCGCTACTCTATGTCTATACTA
TACGATATAAACACCTGATGTGCACACAAGCACAGGTTGCATCC
back to top