FC871334

Overview
NameFC871334
Unique NameFC871334
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length500
Libraries
Library NameType
AbsCFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9377 contig Csv1_Contig9377:1482..1981. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC871334 vs. ExPASy Swiss-Prot
Match: MPPA_SOLTU (Mitochondrial-processing peptidase subunit alpha OS=Solanum tuberosum GN=MPP PE=1 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.688e-20
Identity = 46/58 (79.31%), Postives = 53/58 (91.38%), Query Frame = 2 
Query:    2 IGRQFLTYGERKPVEHFLKTVEGVTAKDIASVAQKLLSSPLTMASYGDVINVPSYDAV 175
            IGRQ LTYGER PVEHFLK ++ V+AKDIASV QKL+SSPLTMASYGDV+++PSYDAV
Sbjct:  440 IGRQLLTYGERNPVEHFLKAIDAVSAKDIASVVQKLISSPLTMASYGDVLSLPSYDAV 497
[Close]
BLAST of FC871334 vs. ExPASy Swiss-Prot
Match: MPPA2_ARATH (Probable mitochondrial-processing peptidase subunit alpha-2 OS=Arabidopsis thaliana GN=At3g16480 PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 8.670e-17
Identity = 39/58 (67.24%), Postives = 49/58 (84.48%), Query Frame = 2 
Query:    2 IGRQFLTYGERKPVEHFLKTVEGVTAKDIASVAQKLLSSPLTMASYGDVINVPSYDAV 175
            IGRQ LTYGERKPV+ FLKTV+ +T KDIA    K+++ PLTMA++GDV+NVPSYD+V
Sbjct:  437 IGRQILTYGERKPVDQFLKTVDQLTLKDIADFTSKVITKPLTMATFGDVLNVPSYDSV 494
[Close]
BLAST of FC871334 vs. ExPASy Swiss-Prot
Match: MPPA1_ARATH (Probable mitochondrial-processing peptidase subunit alpha-1 OS=Arabidopsis thaliana GN=At1g51980 PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.136e-15
Identity = 37/58 (63.79%), Postives = 46/58 (79.31%), Query Frame = 2 
Query:    2 IGRQFLTYGERKPVEHFLKTVEGVTAKDIASVAQKLLSSPLTMASYGDVINVPSYDAV 175
            IGRQ LTYGERKPV+ FLK+V+ +T KDIA    K++S PLTM S+GDV+ VPSYD +
Sbjct:  441 IGRQILTYGERKPVDQFLKSVDQLTLKDIADFTSKVISKPLTMGSFGDVLAVPSYDTI 498
The following BLAST results are available for this feature:
BLAST of FC871334 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
MPPA_SOLTU1.688e-2079.31Mitochondrial-processing peptidase subunit alpha O... [more]
MPPA2_ARATH8.670e-1767.24Probable mitochondrial-processing peptidase subuni... [more]
MPPA1_ARATH2.136e-1563.79Probable mitochondrial-processing peptidase subuni... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAK2BH07FM1 AbsCFruit1 Citrus sinensis cDNA clone KN0AAK2BH07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC871334 ID=FC871334; Name=FC871334; organism=Citrus sinensis; type=EST; length=500bp
CATAGGTAGACAATTTCTGACATATGGTGAGAGGAAACCCGTGGAGCATT
TCTTGAAGACTGTGGAAGGAGTTACAGCAAAGGATATTGCTTCCGTAGCA
CAGAAGCTTCTTTCATCTCCTCTCACAATGGCATCATATGGAGATGTCAT
CAATGTCCCAAGCTATGATGCAGTCAGCAGCAAGTTCAAGTCAAAATAAA
ATTGATTTTTTTTCCTTTTTGGTATCAAACTGGGCAGGCTCCTTACCCGT
TGTCTATATTGTTGTGCATCTGCATTCCGTTGAAGCTCTTTTCCGGTCAA
CTGCAGTTCAAAATAAGAGATTTTCATGACACTCCCATTTTTATGAATAA
TTTGGGTTTTAAGCAAGCAGCAGTTTTAAATATGATGCTGTATTGACAAA
CTTAATTGCCTCCTAGAAATATTTCTCATATTCTTTTGTAGTTTGTTCCA
GAAATTATCCAAAGGGAATCAATTCAAATAAAAAAAAAAAAAAAAAAAAA
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