FC871312

Overview
NameFC871312
Unique NameFC871312
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length718
Libraries
Library NameType
AbsCFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6596 contig Csv1_Contig6596:1..718. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC871312 vs. ExPASy Swiss-Prot
Match: ATL2J_ARATH (RING-H2 finger protein ATL2J OS=Arabidopsis thaliana GN=ATL2J PE=2 SV=2)

HSP 1 Score: 102.064 bits (253), Expect = 3.210e-21
Identity = 59/175 (33.71%), Postives = 79/175 (45.14%), Query Frame = 1
Query:  130 EFILALLAVITIPALVYAFFFAVKCPPWPXXXXXXXXXXXXXXXXXXX-ENGVVSKANEGTEMASGLKYRKEAHVKDVGTECPVCLSAFADGEVVRQLSACKHSFHASCIDMWLKSHSNCPICRXXXXXXXXXXXXXXXXR-----------------GRDDDLHQGLPDSASLV 600
            + I  ++A + +PALVYA FF   C                        +   +++    +E  SG K+ K+ H K++G EC VCL  F D + +RQLS CKH+FH  CI+ WLK H NCPICR                                   RDDD  QGLPD++SLV
Sbjct:   63 KLIFVVIAFVAVPALVYALFFNGPCSSSRRNSSSSRTSSSSDDTPHATVDTPPITETTVTSE--SGGKFHKDTHSKEIGNECSVCLMVFTDSDELRQLSECKHAFHVLCIETWLKDHPNCPICRTDVSVKQQTEAPNVPVNVNGNVNRSGGNRRVSATSRDDDWRQGLPDASSLV 235          
BLAST of FC871312 vs. ExPASy Swiss-Prot
Match: ATL5A_ARATH (RING-H2 finger protein ATL5A OS=Arabidopsis thaliana GN=ATL5A PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.467e-14
Identity = 42/84 (50.00%), Postives = 47/84 (55.95%), Query Frame = 1
Query:  280 GVVSKANEGTEM-ASGLKYRK----------EAHVKDVGTECPVCLSAFADGEVVRQLSACKHSFHASCIDMWLKSHSNCPICR 498
            G+ S A  GT    +GLK R+             VK   TEC +CL  FADGE VR L  C HSFH SCID WL SHS+CP CR
Sbjct:   64 GLSSSAAAGTVADRAGLKKRELKKFPVAEYGSGEVKIAATECAICLGEFADGERVRVLPPCNHSFHMSCIDTWLVSHSSCPNCR 147          
BLAST of FC871312 vs. ExPASy Swiss-Prot
Match: EL5_ORYSJ (E3 ubiquitin-protein ligase EL5 OS=Oryza sativa subsp. japonica GN=EL5.1 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.597e-12
Identity = 30/55 (54.55%), Postives = 35/55 (63.64%), Query Frame = 1
Query:  334 RKEAHVKDVGTECPVCLSAFADGEVVRQLSACKHSFHASCIDMWLKSHSNCPICR 498
            ++E    D G EC VCL+   DGE  R L  C H FHA C+DMWL SHS CP+CR
Sbjct:  122 KEEEEEDDDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCR 176          
BLAST of FC871312 vs. ExPASy Swiss-Prot
Match: ATL5G_ARATH (Probable RING-H2 finger protein ATL5G OS=Arabidopsis thaliana GN=ATL5G PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.557e-12
Identity = 28/46 (60.87%), Postives = 34/46 (73.91%), Query Frame = 1
Query:  361 GTECPVCLSAFADGEVVRQLSACKHSFHASCIDMWLKSHSNCPICR 498
            G++C VCLS F + E +R L  C H+FH  CID WLKSHSNCP+CR
Sbjct:  139 GSDCSVCLSEFEENESLRLLPKCNHAFHLPCIDTWLKSHSNCPLCR 184          
BLAST of FC871312 vs. ExPASy Swiss-Prot
Match: ATL2H_ARATH (RING-H2 finger protein ATL2H OS=Arabidopsis thaliana GN=ATL2H PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.557e-12
Identity = 25/49 (51.02%), Postives = 37/49 (75.51%), Query Frame = 1
Query:  352 KDVGTECPVCLSAFADGEVVRQLSACKHSFHASCIDMWLKSHSNCPICR 498
            K+ GTEC +CLS F+D + VR ++ C+H FH++CID+W + H  CP+CR
Sbjct:   97 KNHGTECAICLSEFSDEDTVRLITVCRHPFHSNCIDLWFELHKTCPVCR 145          
BLAST of FC871312 vs. ExPASy Swiss-Prot
Match: ATL1O_ARATH (RING-H2 finger protein ATL1O OS=Arabidopsis thaliana GN=ATL1O PE=2 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 4.646e-12
Identity = 27/45 (60.00%), Postives = 34/45 (75.56%), Query Frame = 1
Query:  364 TECPVCLSAFADGEVVRQLSACKHSFHASCIDMWLKSHSNCPICR 498
            T+CPVCL+ F + E +R L  C H+FH SCID WL SH+NCP+CR
Sbjct:  175 TDCPVCLNEFEEDESLRLLPKCNHAFHISCIDTWLSSHTNCPLCR 219          
BLAST of FC871312 vs. ExPASy Swiss-Prot
Match: ATL3A_ARATH (RING-H2 finger protein ATL3A OS=Arabidopsis thaliana GN=ATL3A PE=2 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 6.068e-12
Identity = 31/57 (54.39%), Postives = 38/57 (66.67%), Query Frame = 1
Query:  328 KYRKEAHVKDVGTECPVCLSAFADGEVVRQLSACKHSFHASCIDMWLKSHSNCPICR 498
            KYRK     +  ++C VCLS F + E +R L  C H+FH  CID WLKSHSNCP+CR
Sbjct:  146 KYRKMDGFVE-SSDCSVCLSEFQENESLRLLPKCNHAFHVPCIDTWLKSHSNCPLCR 201          
BLAST of FC871312 vs. ExPASy Swiss-Prot
Match: ATL4H_ARATH (Putative RING-H2 finger protein ATL4H OS=Arabidopsis thaliana GN=ATL4H PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.924e-12
Identity = 27/46 (58.70%), Postives = 33/46 (71.74%), Query Frame = 1
Query:  361 GTECPVCLSAFADGEVVRQLSACKHSFHASCIDMWLKSHSNCPICR 498
            GT+C +CL  F + E +R L  C H+FH  CID WLKSHSNCP+CR
Sbjct:  178 GTDCSICLGEFNEDESLRLLPKCNHTFHVVCIDRWLKSHSNCPLCR 223          
BLAST of FC871312 vs. ExPASy Swiss-Prot
Match: ATL5F_ARATH (RING-H2 finger protein ATL5F OS=Arabidopsis thaliana GN=ATL5F PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.765e-11
Identity = 27/46 (58.70%), Postives = 33/46 (71.74%), Query Frame = 1
Query:  361 GTECPVCLSAFADGEVVRQLSACKHSFHASCIDMWLKSHSNCPICR 498
            GTEC VCL+ F + E +R L  C H+FH +CID WL SH NCP+CR
Sbjct:  132 GTECSVCLNEFEEDESLRLLPKCSHAFHLNCIDTWLLSHKNCPLCR 177          
BLAST of FC871312 vs. ExPASy Swiss-Prot
Match: ATL2D_ARATH (Putative RING-H2 finger protein ATL2D OS=Arabidopsis thaliana GN=ATL2D PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.765e-11
Identity = 26/46 (56.52%), Postives = 33/46 (71.74%), Query Frame = 1
Query:  361 GTECPVCLSAFADGEVVRQLSACKHSFHASCIDMWLKSHSNCPICR 498
            G EC VCLS F D E++R L  C+H+FH  CID WL+ H+ CP+CR
Sbjct:  121 GLECSVCLSKFEDVEILRLLPKCRHAFHIGCIDQWLEQHATCPLCR 166          
The following BLAST results are available for this feature:
BLAST of FC871312 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
ATL2J_ARATH3.210e-2133.71RING-H2 finger protein ATL2J OS=Arabidopsis thalia... [more]
ATL5A_ARATH8.467e-1450.00RING-H2 finger protein ATL5A OS=Arabidopsis thalia... [more]
EL5_ORYSJ1.597e-1254.55E3 ubiquitin-protein ligase EL5 OS=Oryza sativa su... [more]
ATL5G_ARATH3.557e-1260.87Probable RING-H2 finger protein ATL5G OS=Arabidops... [more]
ATL2H_ARATH3.557e-1251.02RING-H2 finger protein ATL2H OS=Arabidopsis thalia... [more]
ATL1O_ARATH4.646e-1260.00RING-H2 finger protein ATL1O OS=Arabidopsis thalia... [more]
ATL3A_ARATH6.068e-1254.39RING-H2 finger protein ATL3A OS=Arabidopsis thalia... [more]
ATL4H_ARATH7.924e-1258.70Putative RING-H2 finger protein ATL4H OS=Arabidops... [more]
ATL5F_ARATH1.765e-1158.70RING-H2 finger protein ATL5F OS=Arabidopsis thalia... [more]
ATL2D_ARATH1.765e-1156.52Putative RING-H2 finger protein ATL2D OS=Arabidops... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAK2BE11FM1 AbsCFruit1 Citrus sinensis cDNA clone KN0AAK2BE11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC871312 ID=FC871312; Name=FC871312; organism=Citrus sinensis; type=EST; length=718bp
CCCTCTCTCTCACCTCAATTAAATTCAACACCCCCCCCCCCCCCAAACAT
GGAAAACGCACCCACCATTCTCCGGGAACCGCAGCCGGATTTCCCGCCGT
CGCCCAGCAGCTTCGACCTATCCCCTCTGGAGTTCATCCTCGCCCTCTTA
GCCGTCATCACCATCCCCGCCTTGGTTTACGCTTTCTTCTTCGCCGTCAA
ATGCCCCCCGTGGCCTTTCCGCCGGCGGGAGAGGAGCTTCAGCCGCCGAA
GCTCCGGGGAAAGCGCCGGTGCGGAAAACGGCGTCGTGTCGAAAGCGAAC
GAAGGCACGGAGATGGCATCGGGGCTCAAGTATAGGAAGGAGGCCCATGT
TAAGGACGTGGGCACCGAGTGTCCCGTTTGCTTGTCTGCGTTCGCTGACG
GCGAAGTGGTTCGGCAGCTGAGCGCGTGTAAACACTCTTTCCATGCTTCT
TGCATCGACATGTGGTTGAAATCTCACTCCAATTGTCCGATCTGTCGCGC
TCCCGTTCCCGCCAAGCCCCCTAATAATAACAACGCCGCCCCGCCGCGAG
GTAGAGACGATGATCTTCACCAAGGTTTACCTGATTCCGCCAGCTTAGTC
TGATAGCATAAGTTTTTCGGATAAAGTTCAAATCACGAGAAAATCTCTTA
ATTTATAATATTTAGAAAAAAAATATGAAATGTTTAAAATTGCGAAAGTT
GAGAAATGGAAAGATTTT
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