DY257309

Overview
NameDY257309
Unique NameDY257309
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1276
Libraries
Library NameType
AbsCFruitcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY257309_ssr1044 microsatellite DY257309_ssr1044:1044..1055. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig5917 contig Csv1_Contig5917:443..1718. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of DY257309 vs. ExPASy Swiss-Prot
Match: PLZ12_LUPPO (Protein PPLZ12 OS=Lupinus polyphyllus GN=PPLZ12 PE=2 SV=1)

HSP 1 Score: 259.225 bits (661), Expect = 3.724e-68
Identity = 131/155 (84.52%), Postives = 143/155 (92.26%), Query Frame = 3 
Query:   60 SIEHILMVDIIPDPAVRKAMNEINAAQRLQLASVYKGEAEKILQVKRAEAEAEAKYLGGVGVARQRQAITDGLRENILNFSHKVEGASAKEVMDLIMITQYFDTIKDLGNSSNNTTVFLPHGPGHVRDISDQIRNGLMEASAAQVDG*VIFTRYC 524
            +IEHILMVDIIPD +VR+AMNEINAAQR+QLAS+YKGEAEKILQVKRAEAEAEAKYLGGVGVARQRQAITDGLRENILNFSHKVEG SAKEVMDLIMITQYFDTIKDLGNSS NTTVF+PHGPGHVRDI +QIRNGLME++ A ++      R+C
Sbjct:   31 NIEHILMVDIIPDDSVRRAMNEINAAQRMQLASLYKGEAEKILQVKRAEAEAEAKYLGGVGVARQRQAITDGLRENILNFSHKVEGTSAKEVMDLIMITQYFDTIKDLGNSSKNTTVFIPHGPGHVRDIGEQIRNGLMESARAGIN----IERFC 181
The following BLAST results are available for this feature:
BLAST of DY257309 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
PLZ12_LUPPO3.724e-6884.52Protein PPLZ12 OS=Lupinus polyphyllus GN=PPLZ12 PE... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAK1DG06FM2 AbsCFruit Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257309 ID=DY257309; Name=DY257309; organism=Citrus sinensis; type=EST; length=1276bp
GGAAATTTTATTTGATTGCTCGGAGAATATCGATCTGATGATGTATGCCT
ATGGATAATAGCATTGAGCACATATTGATGGTAGACATTATACCTGATCC
TGCTGTGCGCAAGGCAATGAATGAGATCAATGCGGCTCAAAGGCTTCAGC
TTGCTAGTGTATACAAAGGGGAAGCTGAGAAGATTCTCCAAGTTAAAAGA
GCAGAAGCTGAAGCTGAAGCCAAGTACCTTGGTGGCGTAGGTGTGGCCAG
GCAACGGCAGGCAATAACAGATGGTTTGCGAGAGAACATTTTGAACTTCT
CTCATAAGGTAGAAGGCGCCTCAGCTAAGGAGGTTATGGATCTCATCATG
ATCACTCAGTACTTTGACACGATCAAGGACCTTGGGAACTCATCAAATAA
CACAACTGTCTTTCTACCCCATGGTCCTGGTCATGTTCGGGATATCAGCG
ATCAGATACGCAACGGGCTGATGGAGGCATCTGCTGCTCAAGTAGATGGT
TGAGTGATTTTTACCCGCTATTGTCAATACTAGTTCTTTCTACAGCATAT
GATTGCTTAAGCTACATTGAATTTACAGAGATGCTAATAATATAGGATGG
TATTCATACTTCGATGTATAGTTGTTTTTCCCTGCTGCCAAGAGCTACGA
ATAAACAGGATTATAATGTTTTTATTTGGAATCCTCAAAATGTAGCTACA
CAAAATCCCCCCAAGAATGTAACATGCAAAAACATCCCCACGAACTACCC
TATTATCCAACAATATACGAAGAAAAAAAGCACCCCCCCCTTCTTTCGAG
GAAAAAGATTTACAAAAGACTATTTTGTCATCGTCGCGCCCCACCCACAA
GCCCCCCCCAAAAAAAAAAATAAATTTCCTGTCCCCCCCCAACACCCACC
ACATATCCCCCTCCATGAACACTGATCTACCCTTCCCTGCCCCCCCCCTC
TTCAACTCAATAATTCGTGAAAACCCACCTAACACATTCTTGCATTCCCC
GTCTCCCAGACCCCTCTCCCCCCCCGGCATGACCTATCACTAACGCCCGC
CCGCCCTACCCTCTTCCCTACTTTTTCCCCAACACCCCAACGCCCCAAAC
ATAAATTAACAACACTCCCTAGACTTAGTCAAGATATGTAGCCTTACTTA
TATCTGACATACTACCCCATCTATTTTCTCTCCTCTAACAATCTCACTAT
CCTACCATGTCGTCACCACCTGCCCCCTCTCTCCACTCACACCTATACCC
CCGACATCTACACATCCCATCCGAAG
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