DY257306

Overview
NameDY257306
Unique NameDY257306
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1360
Libraries
Library NameType
AbsCFruitcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6576 contig Csv1_Contig6576:1..1360. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of DY257306 vs. ExPASy Swiss-Prot
Match: PUB19_ARATH (U-box domain-containing protein 19 OS=Arabidopsis thaliana GN=PUB19 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.382e-14
Identity = 45/121 (37.19%), Postives = 70/121 (57.85%), Query Frame = 3 
Query:   18 DSLAVLVNLAEDIQGTSTILKTSALPVIIGLL-QTLTSRAGKEYCVSILLSLCSNAREEVTASLAKDPSLMNSLYSLKTDGTSHARTKARSLIKILHTFFETCSSGVEGSAAPHERPFHVW 377
            DS+A+L  +AE   G  ++L+   L + + +L  +  S A K++CV++LL+LC N   +V  SLAK+PS+M SLY+  ++G      KA +LIK++H F E   +G        ER  H W
Sbjct:  567 DSMAILAKMAEYPDGMISVLRRGGLKLAVKILGSSEVSPATKQHCVALLLNLCHNGGSDVVGSLAKNPSIMGSLYTASSNGELGGGKKASALIKMIHEFQER-KTGPGEPVLERERFVHAW 686
The following BLAST results are available for this feature:
BLAST of DY257306 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
PUB19_ARATH3.382e-1437.19U-box domain-containing protein 19 OS=Arabidopsis ... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAK1DG02FM2 AbsCFruit Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257306 ID=DY257306; Name=DY257306; organism=Citrus sinensis; type=EST; length=1360bp
GACCTGACCTAGTACCAGATTCGCTAGCTGTTCTTGTAAATTTAGCTGAG
GATATTCAAGGAACGTCGACAATTCTGAAGACTTCAGCATTGCCTGTAAT
TATTGGGCTATTGCAAACGTTAACTTCACGAGCTGGGAAAGAGTATTGTG
TCTCAATATTACTCTCTTTATGCAGCAATGCTCGTGAAGAGGTGACTGCA
AGTTTGGCGAAGGACCCTTCACTCATGAATTCACTATATTCTCTCAAAAC
AGATGGCACATCCCACGCAAGAACAAAGGCGCGTTCCCTCATCAAAATTC
TTCATACATTCTTCGAAACTTGCTCCTCTGGAGTCGAGGGTTCGGCAGCT
CCTCATGAACGACCGTTTCATGTCTGGTAAATTGTTTTATAATGATTCTA
TCACTATCCATGTAACTACAGACATACAATATAGAGAACAGAATCACATG
GTACTCTCGATTGCTTTCTCCTTCTGCCATTTCTATTACTTCACTTTTTG
TAAGAGCTAATTACTTTTCCGTCTGCATAGACTCGATCCCAATACATAAC
AACATATGTGTTTTTGGCACAACAAAAAACAATAAACCAAAACACCCACC
TCTCCCCCACACAGCTGGTATTCTAAGAAAGCCTTGCCTCCACATTTTTC
TGCACCACACACCTCCACCCTCTAACCACACAACACCACCTCCTCTGCCA
CTCCCTTCTTTTCCCCTTATCAACGGCCACATTCTCACTGGCCCTACACT
GCCTTAACTCCCGCGCTGGGCACACACCCAAAACACACTGCATAAACCAC
TGTACGAAACCATACACAATTTCATTAAAGTCAAAGAATCTCAACCCACC
CCGCCCCACACCCCTTACAATCTTCCCCCATTCTCCTTTCCTTTACTCCA
CATTTTATTATTTTCTGCCTGATGCCGATCTCCCAATTCATATTCTTATT
CTCTGCCATTAACGCTAAAACACCCTCAGATCTCATCCACCATCCCCAAC
CCACTCCTACCCCCCTACTCCCTTCCCTACCGCCACTTTTTCTCACTTCC
TCCCCCCCACCCCTACAGCTTCTCTCCCCACACCCACATCACTGCCCACT
CCACTCACACCGCTCCACCCTCCTCACACACCCACTACCCCGCTCCCCCC
CTTCTCCACACCTACCTACCCACCACCACCCAACTTCTCTCTACACAACC
TTAAACATATACGATAACTAGAACATCCTACGACAACCACCAGTACTCAC
CGCCTCATGAACGCAACGCCGACACACCACACCTCCCGCCACCGCTTCAC
ACAACGCCACACCCCTACTATACCCCAGCCCTCAATTACCATGACTACTT
ATATTGAATT
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