DY257471

Overview
NameDY257471
Unique NameDY257471
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length649
Libraries
Library NameType
AbsCFruitcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6612 contig Csv1_Contig6612:1..649. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY257471 vs. ExPASy Swiss-Prot
Match: RLA2_PARAR (60S acidic ribosomal protein P2 OS=Parthenium argentatum PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.124e-14
Identity = 37/53 (69.81%), Postives = 47/53 (88.68%), Query Frame = 3
Query:   42 GGNTSPSADDIKEILGSVGADCEDNRLELLLSEVKGKDIIELIASGREKLDSM 200
            GGNTSP+ +D+K IL SVGAD +D+++ELLLS+VKGKDI ELIASGRE+L S+
Sbjct:   13 GGNTSPTDEDLKSILASVGADADDDKIELLLSQVKGKDITELIASGRERLASV 65          
BLAST of DY257471 vs. ExPASy Swiss-Prot
Match: RLA2B_MAIZE (60S acidic ribosomal protein P2B OS=Zea mays GN=RPP2B PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.560e-13
Identity = 41/100 (41.00%), Postives = 54/100 (54.00%), Query Frame = 3
Query:   42 GGNTSPSADDIKEILGSVGADCEDNRLELLLSEVKGKDIIELIASGREKLDSMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDDMGFSLF 341
            GGNTSP+ADD+K IL SVGA+ ++ +LE LL+E+K KDI E+IA+GRE+L S+                                      D+DMGFSLF
Sbjct:   13 GGNTSPTADDVKSILESVGAEADEEKLEFLLTELKDKDITEVIAAGRERLSSVPSGGGAIDMGAPAAVAGGGAAPAEEAKKEEKVEEKEESDEDMGFSLF 112          
BLAST of DY257471 vs. ExPASy Swiss-Prot
Match: RLA24_ARATH (60S acidic ribosomal protein P2-4 OS=Arabidopsis thaliana GN=RPP2D PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 5.956e-13
Identity = 36/53 (67.92%), Postives = 44/53 (83.02%), Query Frame = 3
Query:   42 GGNTSPSADDIKEILGSVGADCEDNRLELLLSEVKGKDIIELIASGREKLDSM 200
            GGN +PSAD+IK+I+G+VGAD +   +ELLL EV GKDI ELIASGREKL S+
Sbjct:   13 GGNANPSADNIKDIIGAVGADVDGESIELLLKEVSGKDIAELIASGREKLASV 65          
BLAST of DY257471 vs. ExPASy Swiss-Prot
Match: RLA21_ARATH (60S acidic ribosomal protein P2-1 OS=Arabidopsis thaliana GN=RPP2A PE=2 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 1.733e-12
Identity = 35/52 (67.31%), Postives = 44/52 (84.62%), Query Frame = 3
Query:   45 GNTSPSADDIKEILGSVGADCEDNRLELLLSEVKGKDIIELIASGREKLDSM 200
            G  SP+  DIK+ILGSVGA+ ED+++ELLL EVKGKD+ ELIA+GREKL S+
Sbjct:   14 GKASPTTGDIKDILGSVGAETEDSQIELLLKEVKGKDLAELIAAGREKLASV 65          
BLAST of DY257471 vs. ExPASy Swiss-Prot
Match: RLA22_ARATH (60S acidic ribosomal protein P2-2 OS=Arabidopsis thaliana GN=RPP2B PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.860e-12
Identity = 35/52 (67.31%), Postives = 44/52 (84.62%), Query Frame = 3
Query:   45 GNTSPSADDIKEILGSVGADCEDNRLELLLSEVKGKDIIELIASGREKLDSM 200
            G  SP++ DIK ILGSVGA+ ED+++ELLL EVKGKD+ ELIA+GREKL S+
Sbjct:   14 GKASPTSADIKTILGSVGAETEDSQIELLLKEVKGKDLAELIAAGREKLASV 65          
BLAST of DY257471 vs. ExPASy Swiss-Prot
Match: RLA2_BRAFL (60S acidic ribosomal protein P2 OS=Branchiostoma floridae PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 8.600e-12
Identity = 34/53 (64.15%), Postives = 42/53 (79.25%), Query Frame = 3
Query:   42 GGNTSPSADDIKEILGSVGADCEDNRLELLLSEVKGKDIIELIASGREKLDSM 200
            GGN +PSA DIK+ILGSVG D ED RL  ++ E+KGKDI E++A+GR KL SM
Sbjct:   13 GGNANPSAGDIKKILGSVGIDAEDERLNKVIGELKGKDIEEVMAAGRGKLSSM 65          
BLAST of DY257471 vs. ExPASy Swiss-Prot
Match: RLA2_ALTAL (60S acidic ribosomal protein P2 OS=Alternaria alternata GN=ALTA5 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.268e-11
Identity = 40/100 (40.00%), Postives = 51/100 (51.00%), Query Frame = 3
Query:   42 GGNTSPSADDIKEILGSVGADCEDNRLELLLSEVKGKDIIELIASGREKLDSMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDDMGFSLF 341
            GGNTSPSA D+K +L SVG + + +RL+ L+SE++GKDI ELIASG EKL S+                                      D+DMGF LF
Sbjct:   13 GGNTSPSAADVKAVLESVGIEADSDRLDKLISELEGKDINELIASGSEKLASVPSGGAGGAAASGGAAAAGGSAQAEAAPEAAKEEEKEESDEDMGFGLF 112          
The following BLAST results are available for this feature:
BLAST of DY257471 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
RLA2_PARAR4.124e-1469.8160S acidic ribosomal protein P2 OS=Parthenium arge... [more]
RLA2B_MAIZE4.560e-1341.0060S acidic ribosomal protein P2B OS=Zea mays GN=RP... [more]
RLA24_ARATH5.956e-1367.9260S acidic ribosomal protein P2-4 OS=Arabidopsis t... [more]
RLA21_ARATH1.733e-1267.3160S acidic ribosomal protein P2-1 OS=Arabidopsis t... [more]
RLA22_ARATH3.860e-1267.3160S acidic ribosomal protein P2-2 OS=Arabidopsis t... [more]
RLA2_BRAFL8.600e-1264.1560S acidic ribosomal protein P2 OS=Branchiostoma f... [more]
RLA2_ALTAL3.268e-1140.0060S acidic ribosomal protein P2 OS=Alternaria alte... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAK2CH07FM1 AbsCFruit Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257471 ID=DY257471; Name=DY257471; organism=Citrus sinensis; type=EST; length=649bp
AAAAAATGAGGGTTGTGGCAGCCTATCTGCTGGCTGTTGTGGGAGGAAAT
ACCAGCCCTTCCGCCGATGATATTAAAGAAATCCTTGGCTCTGTTGGAGC
TGATTGTGAGGACAATAGGCTTGAGCTCCTTCTATCAGAAGTAAAAGGCA
AAGACATAATTGAGCTTATTGCATCTGGACGGGAGAAATTGGACTCAATG
GCTTCTGGTGGTGGACTTGCAGTTGCTGCTGCTCCATCTGCCGGTGGTGC
ACGCGCTGCCCCCGCTGCTGCTGAGGCCTATAAAGAGGAGAAGGTGGAGG
AGAAAGAAAAAGCTGATGATGATATGGGCTTCAGTCTTTTCCACTAGAGA
GCTCTTCAGCGTTTTTTTCACCTCTTTCTCCTCAGTTGGGAGCTTCTAAC
TGGACTTAGAAGTTTTGTTATGTTGGAGTTCTGTAATTTTTAGTTTATAT
AATCCTTATATGAAACTTTTAACGTGTTAAGTTGCGGCTACTATATTGAT
ATGCTGTTTTGTGTTGTCTGGTCAGAGATTTATATATCTGGAGACCATCG
TTTTCTATTATTTCATCGTACCCCATGACTCCATGGATGTTTCTGTCGGA
GGTAGAGAATCCCTTCCATGTTCTGCTTGAAAGGAAACCCATGTATTTG
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