DY257170

Overview
NameDY257170
Unique NameDY257170
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length871
Libraries
Library NameType
AbsCFruitcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6545 contig Csv1_Contig6545:1..871. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY257170 vs. ExPASy Swiss-Prot
Match: CNGC1_ARATH (Cyclic nucleotide-gated ion channel 1 OS=Arabidopsis thaliana GN=CNGC1 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 5.800e-13
Identity = 33/95 (34.74%), Postives = 59/95 (62.11%), Query Frame = 2
Query:    2 LQQKVKKYKSYIRRKTDYIDVQXXXXXXXXXXXXXXXXXXCWNLLKKVQEFRKLNEVTLDALCDCVKPTFFTEHTHLIREGDPIDEMIFLVQGKL 286
            L++++++Y+ Y  ++T  +D +                  C  LL +V  F K++E  LDALCD ++P  +TE ++++REGDP+DEM+F+++GKL
Sbjct:  437 LRKRIRRYEQYKWQETRGVDEENLLSNLPKDLRRDIKRHLCLALLMRVPMFEKMDEQLLDALCDRLQPVLYTEESYIVREGDPVDEMLFIMRGKL 531          
BLAST of DY257170 vs. ExPASy Swiss-Prot
Match: CNGC7_ARATH (Putative cyclic nucleotide-gated ion channel 7 OS=Arabidopsis thaliana GN=CNGC7 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.204e-12
Identity = 32/95 (33.68%), Postives = 59/95 (62.11%), Query Frame = 2
Query:    2 LQQKVKKYKSYIRRKTDYIDVQXXXXXXXXXXXXXXXXXXCWNLLKKVQEFRKLNEVTLDALCDCVKPTFFTEHTHLIREGDPIDEMIFLVQGKL 286
            L+++V++Y  Y   +T  +D +                  C NL+++V  F  ++E  LDA+C+ +KP+ FTE T+++REGDP++EM+F+++G+L
Sbjct:  453 LRERVRRYDQYKWLETRGVDEENIVQSLPKDLRRDIKRHLCLNLVRRVPLFANMDERLLDAICERLKPSLFTESTYIVREGDPVNEMMFIIRGRL 547          
BLAST of DY257170 vs. ExPASy Swiss-Prot
Match: CNG13_ARATH (Putative cyclic nucleotide-gated ion channel 13 OS=Arabidopsis thaliana GN=CNGC13 PE=2 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 2.878e-12
Identity = 33/95 (34.74%), Postives = 60/95 (63.16%), Query Frame = 2
Query:    2 LQQKVKKYKSYIRRKTDYIDVQXXXXXXXXXXXXXXXXXXCWNLLKKVQEFRKLNEVTLDALCDCVKPTFFTEHTHLIREGDPIDEMIFLVQGKL 286
            L++++++Y+ Y  ++T  ++ +                  C +LLKKV  F  ++E  LDA+CD +KP  +TE+++ IREGDP++EM+F+++GKL
Sbjct:  425 LRKRIRRYEQYKWQETRGVEEENLLRNLPKDLRRDIKRHFCLDLLKKVPLFEIMDEQLLDAVCDKLKPVLYTENSYAIREGDPVEEMLFVMRGKL 519          
BLAST of DY257170 vs. ExPASy Swiss-Prot
Match: CNGC8_ARATH (Putative cyclic nucleotide-gated ion channel 8 OS=Arabidopsis thaliana GN=CNGC8 PE=2 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 3.759e-12
Identity = 31/95 (32.63%), Postives = 59/95 (62.11%), Query Frame = 2
Query:    2 LQQKVKKYKSYIRRKTDYIDVQXXXXXXXXXXXXXXXXXXCWNLLKKVQEFRKLNEVTLDALCDCVKPTFFTEHTHLIREGDPIDEMIFLVQGKL 286
            L+++V++Y  Y   +T  +D +                  C NL+++V  F  ++E  LDA+C+ +KP+ +TE T+++REGDP++EM+F+++G+L
Sbjct:  459 LRERVRRYDQYKWLETRGVDEENIVQSLPKDLRRDIKRHLCLNLVRRVPLFANMDERLLDAICERLKPSLYTESTYIVREGDPVNEMLFIIRGRL 553          
BLAST of DY257170 vs. ExPASy Swiss-Prot
Match: CNGC5_ARATH (Probable cyclic nucleotide-gated ion channel 5 OS=Arabidopsis thaliana GN=CNGC5 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.094e-11
Identity = 32/95 (33.68%), Postives = 57/95 (60.00%), Query Frame = 2
Query:    2 LQQKVKKYKSYIRRKTDYIDVQXXXXXXXXXXXXXXXXXXCWNLLKKVQEFRKLNEVTLDALCDCVKPTFFTEHTHLIREGDPIDEMIFLVQGKL 286
            L+++V++Y  Y   +T  +D +                  C  L+++V  F+ +++  LDA+C  +KP  FTE T+L+REGDP+DEM+F+++G+L
Sbjct:  449 LRERVRRYDQYKWLETRGVDEEYLVQNLPKDLRRDIKRHLCLALVRRVPLFKSMDDKLLDAICMRLKPCLFTESTYLVREGDPVDEMLFIIRGRL 543          
BLAST of DY257170 vs. ExPASy Swiss-Prot
Match: CNG10_ARATH (Probable cyclic nucleotide-gated ion channel 10 OS=Arabidopsis thaliana GN=CNGC10 PE=2 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.866e-11
Identity = 31/95 (32.63%), Postives = 60/95 (63.16%), Query Frame = 2
Query:    2 LQQKVKKYKSYIRRKTDYIDVQXXXXXXXXXXXXXXXXXXCWNLLKKVQEFRKLNEVTLDALCDCVKPTFFTEHTHLIREGDPIDEMIFLVQGKL 286
            L++++++Y+ Y  ++T  ++ +                  C +LLKKV  F  ++E  LDA+CD ++P  +TE++++IREGDP+ EM+F+++G+L
Sbjct:  424 LRKRIRRYEQYRWQETRGVEEETLLRNLPKDLRRDIKRHLCLDLLKKVPLFEIMDEQLLDAVCDRLRPVLYTENSYVIREGDPVGEMLFVMRGRL 518          
BLAST of DY257170 vs. ExPASy Swiss-Prot
Match: CNGC6_ARATH (Probable cyclic nucleotide-gated ion channel 6 OS=Arabidopsis thaliana GN=CNGC6 PE=1 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 3.182e-11
Identity = 31/95 (32.63%), Postives = 57/95 (60.00%), Query Frame = 2
Query:    2 LQQKVKKYKSYIRRKTDYIDVQXXXXXXXXXXXXXXXXXXCWNLLKKVQEFRKLNEVTLDALCDCVKPTFFTEHTHLIREGDPIDEMIFLVQGKL 286
            L+++V++Y  Y   +T  +D +                  C  L+++V  F  ++E  LDA+C+ +KP  FTE ++L+REGDP++EM+F+++G+L
Sbjct:  465 LRERVRRYDQYKWLETRGVDEENLVQNLPKDLRRDIKRHLCLALVRRVPLFENMDERLLDAICERLKPCLFTEKSYLVREGDPVNEMLFIIRGRL 559          
BLAST of DY257170 vs. ExPASy Swiss-Prot
Match: CNGC9_ARATH (Putative cyclic nucleotide-gated ion channel 9 OS=Arabidopsis thaliana GN=CNGC9 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.090e-11
Identity = 30/95 (31.58%), Postives = 57/95 (60.00%), Query Frame = 2
Query:    2 LQQKVKKYKSYIRRKTDYIDVQXXXXXXXXXXXXXXXXXXCWNLLKKVQEFRKLNEVTLDALCDCVKPTFFTEHTHLIREGDPIDEMIFLVQGKL 286
            L+++V++Y  Y   +T  +D +                  C  L+++V  F  ++E  LDA+C+ +KP  +TE ++L+REGDP++EM+F+++G+L
Sbjct:  464 LRERVRRYDQYKWLETRGVDEENLVQNLPKDLRRDIKRHLCLALVRRVPLFENMDERLLDAICERLKPCLYTESSYLVREGDPVNEMLFIIRGRL 558          
BLAST of DY257170 vs. ExPASy Swiss-Prot
Match: CNG15_ARATH (Putative cyclic nucleotide-gated ion channel 15 OS=Arabidopsis thaliana GN=CNGC15 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.090e-11
Identity = 36/104 (34.62%), Postives = 58/104 (55.77%), Query Frame = 2
Query:    2 LQQKVKKYKSYIRRKTDYIDVQXXXXXXXXXXXXXXXXXXCWNLLKKVQEFRKLNEVTLDALCDCVKPTFFTEHTHLIREGDPIDEMIFLVQGKLRHLHL*GYT 313
            L+Q V+KY  Y    T  +D +                  C++L+++V  F +++E  LDA+C+ +KP   TE T L+REGDP++EM+F+++G     HL  YT
Sbjct:  422 LRQAVRKYDQYKWLATRGVDEEALLISLPLDLRRDIKRHLCFDLVRRVPLFDQMDERMLDAICERLKPALCTEGTFLVREGDPVNEMLFIIRG-----HLDSYT 520          
The following BLAST results are available for this feature:
BLAST of DY257170 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
CNGC1_ARATH5.800e-1334.74Cyclic nucleotide-gated ion channel 1 OS=Arabidops... [more]
CNGC7_ARATH2.204e-1233.68Putative cyclic nucleotide-gated ion channel 7 OS=... [more]
CNG13_ARATH2.878e-1234.74Putative cyclic nucleotide-gated ion channel 13 OS... [more]
CNGC8_ARATH3.759e-1232.63Putative cyclic nucleotide-gated ion channel 8 OS=... [more]
CNGC5_ARATH1.094e-1133.68Probable cyclic nucleotide-gated ion channel 5 OS=... [more]
CNG10_ARATH1.866e-1132.63Probable cyclic nucleotide-gated ion channel 10 OS... [more]
CNGC6_ARATH3.182e-1132.63Probable cyclic nucleotide-gated ion channel 6 OS=... [more]
CNGC9_ARATH7.090e-1131.58Putative cyclic nucleotide-gated ion channel 9 OS=... [more]
CNG15_ARATH7.090e-1134.62Putative cyclic nucleotide-gated ion channel 15 OS... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAK1BD01FM2 AbsCFruit Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257170 ID=DY257170; Name=DY257170; organism=Citrus sinensis; type=EST; length=871bp
TCTCCAGCAAAAGGTGAAGAAATATAAGTCGTACATACGGCGAAAAACTG
ATTACATTGATGTACAAAATCTACTCAATAATCTTCCCAATGAACTCAGA
AGAGAACTAAAGCGCGAACTTTGCTGGAATCTGCTAAAGAAAGTACAAGA
GTTCAGGAAGCTAAATGAGGTAACATTGGATGCTCTATGCGATTGCGTAA
AACCAACTTTCTTCACCGAGCACACTCACTTAATTCGTGAAGGAGACCCA
ATTGACGAGATGATCTTTTTAGTGCAAGGAAAACTGCGCCACCTACACCT
TTAAGGATATACCAAAGTGGCTCAACAAGCTCTGATCTTAAAAGATATGA
TGGCAAAAACACCAGGAAAGAACATCTTCTGCAAGATGGCGACTTCTATG
GAAAAAAAAACTATTGACTGGGCTTTGAAAGACCGCTTCTCATTTGACAT
CCCTAAAGTCAAACCAAACCATTCCAGCACTTACAAATGTCGAATGCCTT
TATGCTTATGGCTGAATACTTGAAATTCGTATCAATAAAATGAATAAATA
GTTAAGTCCCCACAACTAAGGTCTCTACAACTAACAGAACTCGCTCAAAT
TCTCCCCAGAAAATTGAAGGGGCACTTGCATTGAGGTTACTCCCCCCTTC
ACCACATAAATATTTTATTGAAAATATAAACTTTAAATACCAAAAAACTA
CAATTTTCCCTATTTTTCATTCAGAATACTCACACTTTCCCCCCAGGCCC
GACTAATCACCTCTTTCAACGCCCAAACTAATACCCCCCTGCACCAGGGG
CAATTAATCAACCCCTATCCCAATTAAAAAAAACTAAACAAATGGGATAT
ATACAATCTCTCCTCTTTATC
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