FC871226

Overview
NameFC871226
Unique NameFC871226
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length528
Libraries
Library NameType
AbsCFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of FC871226 vs. ExPASy Swiss-Prot
Match: SPT51_ARATH (Putative transcription elongation factor SPT5 homolog 1 OS=Arabidopsis thaliana GN=At4g08350 PE=1 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 9.929e-33
Identity = 65/97 (67.01%), Postives = 87/97 (89.69%), Query Frame = 1 
Query:    1 RSGEESVVGVIREVLPDGSCRVVLGSSGNGDTITALPNEIEIVPPRKTDKIKIMGGPHRGATGKLIGVDGTDGIVKVDVSLDVKILDMAILAKLAQP 291
            ++GE++ VGVIR+V  DG+C+V LGSSG GDTI ALP+E+EI+PPRK+D++KI+GG +RG+TGKLIG+DG+DGIVK+D +LDVKILD+A+LAK  QP
Sbjct:  959 KAGEDTDVGVIRDV-SDGTCKVSLGSSGEGDTIMALPSELEIIPPRKSDRVKIVGGQYRGSTGKLIGIDGSDGIVKIDDNLDVKILDLALLAKFVQP 1054
[Close]
BLAST of FC871226 vs. ExPASy Swiss-Prot
Match: SPT52_ARATH (Putative transcription elongation factor SPT5 homolog 2 OS=Arabidopsis thaliana GN=At2g34210 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 4.784e-19
Identity = 44/78 (56.41%), Postives = 59/78 (75.64%), Query Frame = 1 
Query:   49 DGSCRVVLGSSGNGDTITALPNEIEIVPPRKTDKIKIMGGPHRGATGKLIGVDGTDGIVKVDVSLDVKILDMAILAKL 282
            DGSC V LG  G G+TI A  N++ +V P+K +++KI+GG + G+T K+IG DG DGIVK+D SLD+KIL + ILAKL
Sbjct:  910 DGSCVVALGHRGEGETIRATQNKVSLVCPKKNERVKILGGKYCGSTAKVIGEDGQDGIVKLDESLDIKILKLTILAKL 987
The following BLAST results are available for this feature:
BLAST of FC871226 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
SPT51_ARATH9.929e-3367.01Putative transcription elongation factor SPT5 homo... [more]
SPT52_ARATH4.784e-1956.41Putative transcription elongation factor SPT5 homo... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAK2AG12FM1 AbsCFruit1 Citrus sinensis cDNA clone KN0AAK2AG12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC871226 ID=FC871226; Name=FC871226; organism=Citrus sinensis; type=EST; length=528bp
AGGTCCGGAGAGGAATCTGTTGTTGGAGTCATCCGAGAAGTGCTTCCGGA
TGGGTCATGTAGAGTGGTCCTTGGTTCAAGTGGGAATGGTGATACAATAA
CGGCGCTTCCAAATGAAATAGAGATAGTGCCACCAAGGAAAACCGACAAG
ATCAAGATAATGGGTGGTCCACATCGCGGTGCAACAGGCAAATTAATTGG
TGTGGATGGTACTGATGGAATTGTAAAAGTAGATGTCAGTCTTGATGTTA
AGATATTAGACATGGCTATACTTGCAAAATTAGCACAACCATGAGCAACA
TGGTTGTAGACGAAAATTCATAGTGTATATTTGTTGTTCCTAAATTTTGA
GTAAAATTTATTAGAGGATTTTCTTTCCGAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATAAAAAACAAACACAAAAC
AAAAGAAAAAAAAAAAAAAGAAAAAAATAAAGGCCCCCCCTTTTTTGAGA
GAAGGGGGGTTATAAAAAAAAGGTGGTT
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