FC871225

Overview
NameFC871225
Unique NameFC871225
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length601
Libraries
Library NameType
AbsCFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC871225_ssr477 microsatellite FC871225_ssr477:477..488. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig13598 contig Csv1_Contig13598:472..1072. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC871225 vs. ExPASy Swiss-Prot
Match: QUA1_ARATH (Glycosyltransferase QUASIMODO1 OS=Arabidopsis thaliana GN=QUA1 PE=1 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 4.652e-30
Identity = 55/88 (62.50%), Postives = 70/88 (79.55%), Query Frame = 1 
Query:    4 NHDIQLWKLGTLPPGLITFWKRTYPLDRFWHVLGLGYNPSVNQRDIERAAVIHYNGNMKPWLEINIPKYRNYWTKHVDYDQLYLRECN 267
            N +  LWKLGTLPPGLITF+  T PLD+ WHVLGLGYNPS++  +I  AAV+H+NGNMKPWL+I + ++R  WTKHVDYD  +++ CN
Sbjct:  469 NENRALWKLGTLPPGLITFYSTTKPLDKSWHVLGLGYNPSISMDEIRNAAVVHFNGNMKPWLDIAMNQFRPLWTKHVDYDLEFVQACN 556
[Close]
BLAST of FC871225 vs. ExPASy Swiss-Prot
Match: GLTR_ARATH (Uncharacterized glycosyltransferase At3g02350 OS=Arabidopsis thaliana GN=At3g02350 PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 3.334e-28
Identity = 53/88 (60.23%), Postives = 68/88 (77.27%), Query Frame = 1 
Query:    4 NHDIQLWKLGTLPPGLITFWKRTYPLDRFWHVLGLGYNPSVNQRDIERAAVIHYNGNMKPWLEINIPKYRNYWTKHVDYDQLYLRECN 267
            N D  LWKLGTLPPGLITF+ +T  LD+ WHVLGLGYNP V+  +I  A VIHYNGNMKPWL+I + +Y++ WTK+VD +  +++ CN
Sbjct:  471 NEDRTLWKLGTLPPGLITFYSKTKSLDKSWHVLGLGYNPGVSMDEIRNAGVIHYNGNMKPWLDIAMNQYKSLWTKYVDNEMEFVQMCN 558
The following BLAST results are available for this feature:
BLAST of FC871225 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
QUA1_ARATH4.652e-3062.50Glycosyltransferase QUASIMODO1 OS=Arabidopsis thal... [more]
GLTR_ARATH3.334e-2860.23Uncharacterized glycosyltransferase At3g02350 OS=A... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAK2AG11FM1 AbsCFruit1 Citrus sinensis cDNA clone KN0AAK2AG11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC871225 ID=FC871225; Name=FC871225; organism=Citrus sinensis; type=EST; length=601bp
CAGAATCATGACATACAATTGTGGAAGCTGGGAACACTACCGCCTGGTCT
TATAACATTCTGGAAACGCACATATCCCCTGGACCGTTTTTGGCATGTGC
TGGGGCTTGGATACAATCCCAGTGTCAACCAGAGGGATATAGAGAGGGCG
GCTGTCATACACTACAATGGGAACATGAAACCATGGCTTGAGATAAACAT
ACCAAAGTATAGGAACTATTGGACCAAACATGTAGACTATGATCAATTGT
ATTTGCGAGAATGCAACATCAATCCATAGTCCGGGCAGAATTTGAAGTTT
CCTGAACACTGCTTTGTTGGCCTTAAATTTTTCAAGGTCTCTTCCATCTG
TCATTGTAGATTATTGTGTTTGGAAGATAAAGCTTCTGAGTTTAATTCTT
TTCACTGTACATTTTAATTTTTGTTTTTGTTTTCTTAGGAGGATTATAGA
TTTAGAGCCGTAATGCATGGAATATGTTTATTTATTTATTTTTCCGAATC
TTCAGTAACATTTTTGGAAATTTGCACTTGTATATGTAAATGAGTTGAAG
TTAGATATATGTATTGTTTTTGGCCAAAAAAAAAAAAAAAAAAAAAAAAA
A
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