EY676963 | Citrus Genome Database

Overview


Name	EY676963
Unique Name	EY676963
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	874

Libraries


Library Name	Type
Sweet orange leaf, infected with CiLV	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of EY676963 vs. ExPASy Swiss-Prot
Match: RS92_ARATH (40S ribosomal protein S9-2 OS=Arabidopsis thaliana GN=RPS9C PE=2 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 1.175e-45
Identity = 72/83 (86.75%), Postives = 77/83 (92.77%), Query Frame = 1

Query:    1 KTFKKPPRPYEKERLDAEFPLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQKQ 249
            KTFKKP RPYEKERLDAE  LVGEYGLRCKRELWRVQY LSRIRNAAR+LLTLDEKNPRRIFEGEALLRRM+RYG L+E+Q +
Sbjct:   12 KTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYTLSRIRNAARELLTLDEKNPRRIFEGEALLRRMNRYGLLDETQNK 94

HSP 2 Score: 55.4546 bits (132), Expect = 1.175e-45
Identity = 26/31 (83.87%), Postives = 29/31 (93.55%), Query Frame = 2

Query:  242 RNKLDYVLALTEENFLERRLQTLVFKNGMGK 334
            +NKLDYVLALT ENFLERRLQT+VFK+GM K
Sbjct:   92 QNKLDYVLALTVENFLERRLQTIVFKSGMAK 122

[Close]

BLAST of EY676963 vs. ExPASy Swiss-Prot
Match: RS91_ARATH (40S ribosomal protein S9-1 OS=Arabidopsis thaliana GN=RPS9B PE=1 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.381e-43
Identity = 70/83 (84.34%), Postives = 76/83 (91.57%), Query Frame = 1

Query:    1 KTFKKPPRPYEKERLDAEFPLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQKQ 249
            KTFK P RPYEKERLD+E  LVGEYGLR KRELWRVQY+LSRIRNAARDLLTLDEK+PRRIFEGEALLRRM+RYG L+ESQ +
Sbjct:   12 KTFKGPRRPYEKERLDSELKLVGEYGLRNKRELWRVQYSLSRIRNAARDLLTLDEKSPRRIFEGEALLRRMNRYGLLDESQNK 94

HSP 2 Score: 55.8398 bits (133), Expect = 1.381e-43
Identity = 26/32 (81.25%), Postives = 30/32 (93.75%), Query Frame = 2

Query:  239 ARNKLDYVLALTEENFLERRLQTLVFKNGMGK 334
            ++NKLDYVLALT ENFLERRLQT+VFK+GM K
Sbjct:   91 SQNKLDYVLALTVENFLERRLQTIVFKSGMAK 122

[Close]

BLAST of EY676963 vs. ExPASy Swiss-Prot
Match: RS9_DICDI (40S ribosomal protein S9 OS=Dictyostelium discoideum GN=rps9 PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 1.783e-33
Identity = 53/83 (63.86%), Postives = 69/83 (83.13%), Query Frame = 1

Query:    1 KTFKKPPRPYEKERLDAEFPLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQKQ 249
            KT   P RP+EKER+DAE  +VGE+GL+ K E+WRVQYAL++IR AAR+LL LDEK+P+RIFEG ALLRR+H+ G +EES+ +
Sbjct:    7 KTSHTPRRPFEKERIDAELKVVGEFGLKNKNEVWRVQYALAKIRKAARELLVLDEKDPKRIFEGSALLRRLHKLGVMEESKNK 89

HSP 2 Score: 49.2914 bits (116), Expect = 1.783e-33
Identity = 21/34 (61.76%), Postives = 29/34 (85.29%), Query Frame = 2

Query:  233 KRARNKLDYVLALTEENFLERRLQTLVFKNGMGK 334
            + ++NKLDY+L L  ++F+ERRLQTLVFKNG+ K
Sbjct:   84 EESKNKLDYILNLKVQDFMERRLQTLVFKNGLAK 117

[Close]

BLAST of EY676963 vs. ExPASy Swiss-Prot
Match: RS9_PODAN (40S ribosomal protein S9 OS=Podospora anserina GN=RPS9 PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 7.750e-31
Identity = 53/81 (65.43%), Postives = 65/81 (80.25%), Query Frame = 1

Query:    1 KTFKKPPRPYEKERLDAEFPLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQ 243
            KT K P RP+E  RLD+E  LVGEYGLR KRE+WRV   LS+IR AAR+LLTLDEK+P+R+FEG AL+RR+ R G L+ES+
Sbjct:    8 KTAKVPRRPFEAARLDSELKLVGEYGLRNKREVWRVLLTLSKIRRAARELLTLDEKDPKRLFEGNALIRRLVRVGVLDESR 88

HSP 2 Score: 47.3654 bits (111), Expect = 7.750e-31
Identity = 23/32 (71.88%), Postives = 27/32 (84.38%), Query Frame = 2

Query:  239 ARNKLDYVLALTEENFLERRLQTLVFKNGMGK 334
            +R KLDYVLAL  E+FLERRLQTLV+K G+ K
Sbjct:   87 SRMKLDYVLALKAEDFLERRLQTLVYKLGLAK 118

[Close]

BLAST of EY676963 vs. ExPASy Swiss-Prot
Match: RS9_DROME (40S ribosomal protein S9 OS=Drosophila melanogaster GN=RpS9 PE=1 SV=2)

HSP 1 Score: 111.309 bits (277), Expect = 1.314e-30
Identity = 52/81 (64.20%), Postives = 67/81 (82.72%), Query Frame = 1

Query:    1 KTFKKPPRPYEKERLDAEFPLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQ 243
            KT+  P RPYEK RLD E  ++GEYGLR KRE+WRV+YAL++IR AAR+LLTLDEK+ +R+F+G ALLRR+ R G L+ES+
Sbjct:   12 KTYVTPRRPYEKARLDQELKIIGEYGLRNKREVWRVKYALAKIRKAARELLTLDEKDEKRLFQGNALLRRLVRIGVLDESR 92

HSP 2 Score: 43.8986 bits (102), Expect = 1.314e-30
Identity = 22/32 (68.75%), Postives = 25/32 (78.12%), Query Frame = 2

Query:  239 ARNKLDYVLALTEENFLERRLQTLVFKNGMGK 334
            +R KLDYVL L  E+FLERRLQT VFK G+ K
Sbjct:   91 SRMKLDYVLGLKIEDFLERRLQTQVFKLGLAK 122

[Close]

BLAST of EY676963 vs. ExPASy Swiss-Prot
Match: RS9B_SCHPO (40S ribosomal protein S9-B OS=Schizosaccharomyces pombe GN=rps9b PE=1 SV=3)

HSP 1 Score: 108.997 bits (271), Expect = 2.228e-30
Identity = 51/81 (62.96%), Postives = 64/81 (79.01%), Query Frame = 1

Query:    1 KTFKKPPRPYEKERLDAEFPLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQ 243
            KT+K P RP+E  RLDAE  L GEYGLR K E+WRV   LS+IR AAR+LLTLDEK+P+R+FEG A++RR+ R G L+ES+
Sbjct:   10 KTYKVPRRPFESARLDAELKLAGEYGLRNKHEIWRVALTLSKIRRAARELLTLDEKDPKRLFEGNAIIRRLVRLGILDESR 90

HSP 2 Score: 45.4394 bits (106), Expect = 2.228e-30
Identity = 23/32 (71.88%), Postives = 26/32 (81.25%), Query Frame = 2

Query:  239 ARNKLDYVLALTEENFLERRLQTLVFKNGMGK 334
            +R KLDYVLAL  E+FLERRLQT VFK G+ K
Sbjct:   89 SRMKLDYVLALRIEDFLERRLQTQVFKLGLAK 120

[Close]

BLAST of EY676963 vs. ExPASy Swiss-Prot
Match: RS9_RAT (40S ribosomal protein S9 OS=Rattus norvegicus GN=Rps9 PE=1 SV=4)

HSP 1 Score: 111.694 bits (278), Expect = 3.777e-30
Identity = 52/81 (64.20%), Postives = 66/81 (81.48%), Query Frame = 1

Query:    1 KTFKKPPRPYEKERLDAEFPLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQ 243
            KT+  P RP+EK RLD E  L+GEYGLR KRE+WRV++ L++IR AAR+LLTLDEK+PRR+FEG ALLRR+ R G L+E +
Sbjct:   11 KTYVTPRRPFEKSRLDQELKLIGEYGLRNKREVWRVKFTLAKIRKAARELLTLDEKDPRRLFEGNALLRRLVRIGVLDEGK 91

HSP 2 Score: 41.9726 bits (97), Expect = 3.777e-30
Identity = 20/29 (68.97%), Postives = 23/29 (79.31%), Query Frame = 2

Query:  248 KLDYVLALTEENFLERRLQTLVFKNGMGK 334
            KLDY+L L  E+FLERRLQT VFK G+ K
Sbjct:   93 KLDYILGLKIEDFLERRLQTQVFKLGLAK 121

[Close]

BLAST of EY676963 vs. ExPASy Swiss-Prot
Match: RS9_PAPAN (40S ribosomal protein S9 OS=Papio anubis GN=RPS9 PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.777e-30
Identity = 52/81 (64.20%), Postives = 66/81 (81.48%), Query Frame = 1

Query:    1 KTFKKPPRPYEKERLDAEFPLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQ 243
            KT+  P RP+EK RLD E  L+GEYGLR KRE+WRV++ L++IR AAR+LLTLDEK+PRR+FEG ALLRR+ R G L+E +
Sbjct:   11 KTYVTPRRPFEKSRLDQELKLIGEYGLRNKREVWRVKFTLAKIRKAARELLTLDEKDPRRLFEGNALLRRLVRIGVLDEGK 91

HSP 2 Score: 41.9726 bits (97), Expect = 3.777e-30
Identity = 20/29 (68.97%), Postives = 23/29 (79.31%), Query Frame = 2

Query:  248 KLDYVLALTEENFLERRLQTLVFKNGMGK 334
            KLDY+L L  E+FLERRLQT VFK G+ K
Sbjct:   93 KLDYILGLKIEDFLERRLQTQVFKLGLAK 121

[Close]

BLAST of EY676963 vs. ExPASy Swiss-Prot
Match: RS9_MOUSE (40S ribosomal protein S9 OS=Mus musculus GN=Rps9 PE=2 SV=3)

HSP 1 Score: 111.694 bits (278), Expect = 3.777e-30
Identity = 52/81 (64.20%), Postives = 66/81 (81.48%), Query Frame = 1

Query:    1 KTFKKPPRPYEKERLDAEFPLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQ 243
            KT+  P RP+EK RLD E  L+GEYGLR KRE+WRV++ L++IR AAR+LLTLDEK+PRR+FEG ALLRR+ R G L+E +
Sbjct:   11 KTYVTPRRPFEKSRLDQELKLIGEYGLRNKREVWRVKFTLAKIRKAARELLTLDEKDPRRLFEGNALLRRLVRIGVLDEGK 91

HSP 2 Score: 41.9726 bits (97), Expect = 3.777e-30
Identity = 20/29 (68.97%), Postives = 23/29 (79.31%), Query Frame = 2

Query:  248 KLDYVLALTEENFLERRLQTLVFKNGMGK 334
            KLDY+L L  E+FLERRLQT VFK G+ K
Sbjct:   93 KLDYILGLKIEDFLERRLQTQVFKLGLAK 121

[Close]

BLAST of EY676963 vs. ExPASy Swiss-Prot
Match: RS9_HUMAN (40S ribosomal protein S9 OS=Homo sapiens GN=RPS9 PE=1 SV=3)

HSP 1 Score: 111.694 bits (278), Expect = 3.777e-30
Identity = 52/81 (64.20%), Postives = 66/81 (81.48%), Query Frame = 1

Query:    1 KTFKKPPRPYEKERLDAEFPLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQ 243
            KT+  P RP+EK RLD E  L+GEYGLR KRE+WRV++ L++IR AAR+LLTLDEK+PRR+FEG ALLRR+ R G L+E +
Sbjct:   11 KTYVTPRRPFEKSRLDQELKLIGEYGLRNKREVWRVKFTLAKIRKAARELLTLDEKDPRRLFEGNALLRRLVRIGVLDEGK 91

HSP 2 Score: 41.9726 bits (97), Expect = 3.777e-30
Identity = 20/29 (68.97%), Postives = 23/29 (79.31%), Query Frame = 2

Query:  248 KLDYVLALTEENFLERRLQTLVFKNGMGK 334
            KLDY+L L  E+FLERRLQT VFK G+ K
Sbjct:   93 KLDYILGLKIEDFLERRLQTQVFKLGLAK 121

The following BLAST results are available for this feature:

BLAST of EY676963 vs. ExPASy Swiss-Prot

BLAST of EY676963 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43


Match Name	E-value	Identity	Description
RS92_ARATH	1.175e-45	86.75	40S ribosomal protein S9-2 OS=Arabidopsis thaliana...	[more]
RS91_ARATH	1.381e-43	84.34	40S ribosomal protein S9-1 OS=Arabidopsis thaliana...	[more]
RS9_DICDI	1.783e-33	63.86	40S ribosomal protein S9 OS=Dictyostelium discoide...	[more]
RS9_PODAN	7.750e-31	65.43	40S ribosomal protein S9 OS=Podospora anserina GN=...	[more]
RS9_DROME	1.314e-30	64.20	40S ribosomal protein S9 OS=Drosophila melanogaste...	[more]
RS9B_SCHPO	2.228e-30	62.96	40S ribosomal protein S9-B OS=Schizosaccharomyces ...	[more]
RS9_RAT	3.777e-30	64.20	40S ribosomal protein S9 OS=Rattus norvegicus GN=R...	[more]
RS9_PAPAN	3.777e-30	64.20	40S ribosomal protein S9 OS=Papio anubis GN=RPS9 P...	[more]
RS9_MOUSE	3.777e-30	64.20	40S ribosomal protein S9 OS=Mus musculus GN=Rps9 P...	[more]
RS9_HUMAN	3.777e-30	64.20	40S ribosomal protein S9 OS=Homo sapiens GN=RPS9 P...	[more]

Pages

Properties


Property Name	Value
Genbank description	CS00-C1-401-029-A12-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>EY676963 ID=EY676963; Name=EY676963; organism=Citrus sinensis; type=EST; length=874bp
AAAACCTTCAAGAAGCCCCCACGTCCCTATGAGAAGGAGCGATTGGATGC
TGAGTTCCCACTTGTGGGAGAGTATGGGCTTCGCTGCAAGAGGGAACTCT
GGAGGGTTCAATACGCACTGAGCCGCATCCGAAATGCTGCGAGGGATCTT
CTCACTCTCGATGAGAAGAACCCACGACGTATTTTTGAGGGTGAGGCCCT
TCTCAGGAGGATGCACAGGTATGGCTTCTTGGAAGAGAGCCAGAAACAAG
CTTGATTATGTGTTGGCCCTCACTGAGGAGAACTTTCTTGAACGTCGTCT
TCAGACCCTTGTGTTCAAGAATGGAATGGGTAAAGACGATTCACCGTGCT
CAAGTGGCTCAACAAGCCAAGGCACAATTTAGGGTAGGGAGGGAAACTGT
CGAAATTTCCAAGAGAGGGTGGGGGGAGGGGGAACGAAGAAAAGATTTGA
AGTGTCAAAAGAAAAGAGGCAATGGAAAGAAAGGAGCAAAAAAGGAGAGA
AAAAAAAGAAAAATAAAGGAGAAAAACAAAAGACCGAACAGGAGAAAAGA
AAAAGAAAAAAAAGTGGAAACAAGAAACAAACGGGGCAATAGAAGAAAGA
TCGATAAAAGAAACAAGAGAATCAAAAGAAAAAAGAAAAGAAAAAAAAAA
AAGGAAGGAAGGAAAAGGAGACGAAGAGAAACCCAAAAAAGACGAAGGAA
AAAGAAAAAAAAAGACAAGAACGAAGAGAAAAGTGAAAGGAAAAAAGAAA
AGAGAAAAATCAATACCAATAAACAAAAGAAACCGTAAGGATAAAAAAAA
AGAGAAAACAAAAATTGAGACGACTACACGAAGGAAAAGAAGAATAAGAA
ATAAAGAAGGGAAAGAGAAGGAAC