FC871185

Overview
NameFC871185
Unique NameFC871185
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length383
Libraries
Library NameType
AbsCFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10724 contig Csv1_Contig10724:841..1231. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC871185 vs. ExPASy Swiss-Prot
Match: GME1_ORYSJ (GDP-mannose 3,5-epimerase 1 OS=Oryza sativa subsp. japonica GN=GME-1 PE=1 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 1.613e-37
Identity = 73/81 (90.12%), Postives = 78/81 (96.30%), Query Frame = 2 
Query:    2 IPGPDGVRGRNSDNTLIKEKLGWAPSMKLKDGLRITYFWIKEQIEKEKTQGIDLSVYGSSKVVGTQAPVQLGSLRAADGKE 244
            IPGP+GVRGRNSDNTLIKEKLGWAP+MKLKDGLR TYFWIKEQIEKEKTQG+D++ YGSSKVV TQAPVQLGSLRAADGKE
Sbjct:  298 IPGPEGVRGRNSDNTLIKEKLGWAPTMKLKDGLRFTYFWIKEQIEKEKTQGVDIAGYGSSKVVSTQAPVQLGSLRAADGKE 378
[Close]
BLAST of FC871185 vs. ExPASy Swiss-Prot
Match: GME1_ORYSI (GDP-mannose 3,5-epimerase 1 OS=Oryza sativa subsp. indica GN=OsI_032456 PE=2 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 1.613e-37
Identity = 73/81 (90.12%), Postives = 78/81 (96.30%), Query Frame = 2 
Query:    2 IPGPDGVRGRNSDNTLIKEKLGWAPSMKLKDGLRITYFWIKEQIEKEKTQGIDLSVYGSSKVVGTQAPVQLGSLRAADGKE 244
            IPGP+GVRGRNSDNTLIKEKLGWAP+MKLKDGLR TYFWIKEQIEKEKTQG+D++ YGSSKVV TQAPVQLGSLRAADGKE
Sbjct:  298 IPGPEGVRGRNSDNTLIKEKLGWAPTMKLKDGLRFTYFWIKEQIEKEKTQGVDIAGYGSSKVVSTQAPVQLGSLRAADGKE 378
[Close]
BLAST of FC871185 vs. ExPASy Swiss-Prot
Match: GME2_ORYSJ (GDP-mannose 3,5-epimerase 2 OS=Oryza sativa subsp. japonica GN=GME-2 PE=2 SV=2)

HSP 1 Score: 153.295 bits (386), Expect = 3.594e-37
Identity = 72/81 (88.89%), Postives = 78/81 (96.30%), Query Frame = 2 
Query:    2 IPGPDGVRGRNSDNTLIKEKLGWAPSMKLKDGLRITYFWIKEQIEKEKTQGIDLSVYGSSKVVGTQAPVQLGSLRAADGKE 244
            IPGP+GVRGRNSDNTLIKEKLGWAP+M+LKDGLRITYFWIKEQ+EKEK +G+DLS YGSSKVV TQAPVQLGSLRAADGKE
Sbjct:  291 IPGPEGVRGRNSDNTLIKEKLGWAPTMRLKDGLRITYFWIKEQLEKEKAEGVDLSAYGSSKVVQTQAPVQLGSLRAADGKE 371
[Close]
BLAST of FC871185 vs. ExPASy Swiss-Prot
Match: GME_ARATH (GDP-mannose 3,5-epimerase OS=Arabidopsis thaliana GN=At5g28840 PE=1 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 2.329e-36
Identity = 71/81 (87.65%), Postives = 78/81 (96.30%), Query Frame = 2 
Query:    2 IPGPDGVRGRNSDNTLIKEKLGWAPSMKLKDGLRITYFWIKEQIEKEKTQGIDLSVYGSSKVVGTQAPVQLGSLRAADGKE 244
            IPGP+GVRGRNSDN LIKEKLGWAP+M+LK+GLRITYFWIKEQIEKEK +G D+S+YGSSKVVGTQAPVQLGSLRAADGKE
Sbjct:  297 IPGPEGVRGRNSDNNLIKEKLGWAPNMRLKEGLRITYFWIKEQIEKEKAKGSDVSLYGSSKVVGTQAPVQLGSLRAADGKE 377
The following BLAST results are available for this feature:
BLAST of FC871185 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
GME1_ORYSJ1.613e-3790.12GDP-mannose 3,5-epimerase 1 OS=Oryza sativa subsp.... [more]
GME1_ORYSI1.613e-3790.12GDP-mannose 3,5-epimerase 1 OS=Oryza sativa subsp.... [more]
GME2_ORYSJ3.594e-3788.89GDP-mannose 3,5-epimerase 2 OS=Oryza sativa subsp.... [more]
GME_ARATH2.329e-3687.65GDP-mannose 3,5-epimerase OS=Arabidopsis thaliana ... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAK2AE07FM1 AbsCFruit1 Citrus sinensis cDNA clone KN0AAK2AE07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC871185 ID=FC871185; Name=FC871185; organism=Citrus sinensis; type=EST; length=383bp
CATTCCTGGCCCTGATGGTGTCCGCGGTCGTAATTCAGACAACACACTGA
TCAAAGAGAAGCTTGGTTGGGCACCATCAATGAAGTTGAAGGATGGGCTG
AGAATTACATATTTCTGGATCAAGGAACAGATTGAGAAGGAGAAGACTCA
AGGTATTGACCTATCTGTTTATGGATCATCGAAGGTGGTAGGAACTCAAG
CTCCAGTTCAGTTAGGCTCACTTCGTGCTGCTGATGGCAAAGAATGAAGT
GGTTGAGCCTCTTGTAGTTGCCCTCAGAAAAGCCATGTTTTATTATGCTA
TTTCTAGCAATCATAATTCCATGTTGTCTTATGATATAAAGCTATCACTA
TGAGTTAAAAAAAAAAAAAAAAAAAAAAAAAAA
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