FC871171

Overview
NameFC871171
Unique NameFC871171
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length493
Libraries
Library NameType
AbsCFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13524 contig Csv1_Contig13524:1..493. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC871171 vs. ExPASy Swiss-Prot
Match: IMA1_ARATH (Importin subunit alpha-1 OS=Arabidopsis thaliana GN=KAP1 PE=2 SV=2)

HSP 1 Score: 104.76 bits (260), Expect = 2.234e-22
Identity = 53/73 (72.60%), Postives = 59/73 (80.82%), Query Frame = 3
Query:    6 CPYTKIVTVCLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEKIENLRSRDVNGISEKAVKILETYW 224
            CP  +I+TVCLEGLENILKVG AE N G   GD N YAQL+++AEGLEKIENL+S D N I EKAVKILETYW
Sbjct:  423 CPDPRIITVCLEGLENILKVGEAEKNLGHT-GDMNYYAQLIDDAEGLEKIENLQSHDNNEIYEKAVKILETYW 494          
BLAST of FC871171 vs. ExPASy Swiss-Prot
Match: IMA1B_ORYSJ (Importin subunit alpha-1b OS=Oryza sativa subsp. japonica GN=Os05g0155500 PE=1 SV=2)

HSP 1 Score: 99.7525 bits (247), Expect = 7.186e-21
Identity = 50/73 (68.49%), Postives = 58/73 (79.45%), Query Frame = 3
Query:    6 CPYTKIVTVCLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEKIENLRSRDVNGISEKAVKILETYW 224
            CP  +IVTVCLEGLENILKVG AE N G   GD N YAQ++++AEGLEKIENL+S D   I EKAVK+LE+YW
Sbjct:  429 CPDPRIVTVCLEGLENILKVGEAEKNLGA--GDVNSYAQMIDDAEGLEKIENLQSHDNTEIYEKAVKMLESYW 499          
BLAST of FC871171 vs. ExPASy Swiss-Prot
Match: IMA_SOLLC (Importin subunit alpha OS=Solanum lycopersicum PE=2 SV=2)

HSP 1 Score: 97.4413 bits (241), Expect = 3.566e-20
Identity = 50/73 (68.49%), Postives = 57/73 (78.08%), Query Frame = 3
Query:    6 CPYTKIVTVCLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEKIENLRSRDVNGISEKAVKILETYW 224
            CP  +IVTVCLEGLENILK+G A+ + G   G  N YAQL++EAEGLEKIENL+S D   I EKAVKILETYW
Sbjct:  424 CPDPRIVTVCLEGLENILKIGEADKDLGNTEG-VNVYAQLIDEAEGLEKIENLQSHDNTEIYEKAVKILETYW 495          
BLAST of FC871171 vs. ExPASy Swiss-Prot
Match: IMA2_ARATH (Importin subunit alpha-2 OS=Arabidopsis thaliana GN=KAP2 PE=1 SV=2)

HSP 1 Score: 96.2857 bits (238), Expect = 7.945e-20
Identity = 49/74 (66.22%), Postives = 58/74 (78.38%), Query Frame = 3
Query:    6 CPYTKIVTVCLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEKIENLRSRDVNGISEKAVKILETYWS 227
            CP  K+VTVCLE LENIL VG AE N G   G+ N YAQ+++EAEGLEKIENL+S D N I +KAVKILET+W+
Sbjct:  426 CPDLKVVTVCLEALENILVVGEAEKNLGHT-GEDNLYAQMIDEAEGLEKIENLQSHDNNDIYDKAVKILETFWT 498          
BLAST of FC871171 vs. ExPASy Swiss-Prot
Match: IMA1A_ORYSJ (Importin subunit alpha-1a OS=Oryza sativa subsp. japonica GN=Os01g0253300 PE=1 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 1.038e-19
Identity = 49/73 (67.12%), Postives = 57/73 (78.08%), Query Frame = 3
Query:    6 CPYTKIVTVCLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEKIENLRSRDVNGISEKAVKILETYW 224
            CP  +IVTVCLEGLENILKVG  E +   A GD N ++Q+++EAEGLEKIENL+S D N I EKAVKILE YW
Sbjct:  423 CPDIRIVTVCLEGLENILKVG--ETDKTLAAGDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKILEAYW 493          
The following BLAST results are available for this feature:
BLAST of FC871171 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
IMA1_ARATH2.234e-2272.60Importin subunit alpha-1 OS=Arabidopsis thaliana G... [more]
IMA1B_ORYSJ7.186e-2168.49Importin subunit alpha-1b OS=Oryza sativa subsp. j... [more]
IMA_SOLLC3.566e-2068.49Importin subunit alpha OS=Solanum lycopersicum PE=... [more]
IMA2_ARATH7.945e-2066.22Importin subunit alpha-2 OS=Arabidopsis thaliana G... [more]
IMA1A_ORYSJ1.038e-1967.12Importin subunit alpha-1a OS=Oryza sativa subsp. j... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAK3DB04FM1 AbsCFruit1 Citrus sinensis cDNA clone KN0AAK3DB04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC871171 ID=FC871171; Name=FC871171; organism=Citrus sinensis; type=EST; length=493bp
TTCAATGCCCTTATACAAAGATCGTCACTGTTTGCTTAGAAGGATTAGAG
AACATTTTGAAGGTCGGGGTAGCTGAAATGAATACCGGTACCGCCGTTGG
AGATTTTAATCAATATGCCCAGTTGGTTGAGGAGGCTGAGGGATTAGAAA
AGATTGAAAATCTACGAAGTCGTGACGTCAACGGGATCTCTGAGAAGGCA
GTAAAGATTCTCGAGACATACTGGTCTAGCCGTGTGATTGGAAGAGGACG
ATGATACAAAGGAGGAAGATGCAAAAGGCAGAGACAACTAGTAGTAATTA
TTAACAAAGGTTTAATGGTGGAAGATTCATGCATGCTTGTGTGCCCCTCT
CCTGTTAAGTGTATTGTGGATTGCTGCTGTGTTTCGACACAGTTAATGAT
GAAACTCCTCATCAAATGATCTTTAATCATTCTAATCATGCGAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAACAAAAAAAAAAAAAAAAAAAA
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