DR911200

Overview
NameDR911200
Unique NameDR911200
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length327
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR911200 vs. ExPASy Swiss-Prot
Match: CPR6_CAEEL (Cathepsin B-like cysteine proteinase 6 OS=Caenorhabditis elegans GN=cpr-6 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.288e-14
Identity = 48/121 (39.67%), Postives = 59/121 (48.76%), Query Frame = 3
Query:    6 TISRILDQGHCGSCWAFGAVEALSDRFCI--HFGMNLSLSVNXXXXXXXXXXXXXXXXXYPISAWRYFVHHGVVT-------EECDPYFDSTGCSH--------PGCEPAYPTPKCVRKCV 317
            +I  I DQ  CGSCWAFGAVEA+SDR CI  H  + ++LS +                  P++AWRY+V  G+VT         C PY     C H        P     YPTPKC +KCV
Sbjct:  120 SIKVIRDQSSCGSCWAFGAVEAMSDRICIASHGELQVTLSADDLLSCCKSCGFGCNGGD-PLAAWRYWVKDGIVTGSNYTANNGCKPY-PFPPCEHHSKKTHFDPCPHDLYPTPKCEKKCV 238          
BLAST of DR911200 vs. ExPASy Swiss-Prot
Match: CATB_CHICK (Cathepsin B OS=Gallus gallus GN=CTSB PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.247e-13
Identity = 43/101 (42.57%), Postives = 52/101 (51.49%), Query Frame = 3
Query:    6 TISRILDQGHCGSCWAFGAVEALSDRFCIHFGMNLSLSVN--XXXXXXXXXXXXXXXXXYPISAWRYFVHHGVVTEECDPYFDSTGCSHPGCEPAYPTPKC 302
            TIS I DQG CGSCWAFGAVEA+SDR C+H    +S+ V+                   YP  AWRY+   G+V+      +D    SH GC  AY  P C
Sbjct:   95 TISEIRDQGSCGSCWAFGAVEAISDRICVHTNAKVSVEVSAEDLLSCCGFECGMGCNGGYPSGAWRYWTERGLVS---GGLYD----SHVGCR-AYTIPPC 187          
BLAST of DR911200 vs. ExPASy Swiss-Prot
Match: CPR5_CAEEL (Cathepsin B-like cysteine proteinase 5 OS=Caenorhabditis elegans GN=cpr-5 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.128e-13
Identity = 48/125 (38.40%), Postives = 58/125 (46.40%), Query Frame = 3
Query:    6 TISRILDQGHCGSCWAFGAVEALSDRFCI--HFGMNLSLSVN--XXXXXXXXXXXXXXXXXYPISAWRYFVHHGVVTE-------ECDPYFDS------TGCSHPGC-EPAYPTPKCVRKCVKKN 326
            +I+ I DQ  CGSCWAF A EA+SDR CI  +  +N  LS                     YPI AW+++V HG+VT         C PY  +       G   P C E   PTPKCV  C  KN
Sbjct:   97 SINNIRDQSDCGSCWAFAAAEAISDRTCIASNGAVNTLLSSEDLLSCCTGMFSCGNGCEGGYPIQAWKWWVKHGLVTGGSYETQFGCKPYSIAPCGETVNGVKWPACPEDTEPTPKCVDSCTSKN 221          
BLAST of DR911200 vs. ExPASy Swiss-Prot
Match: CATB_RAT (Cathepsin B OS=Rattus norvegicus GN=Ctsb PE=1 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 2.779e-13
Identity = 44/118 (37.29%), Postives = 55/118 (46.61%), Query Frame = 3
Query:    6 TISRILDQGHCGSCWAFGAVEALSDRFCIHFG--MNLSLSVNXXXXXXXXXXXXXXXXXYPISAWRYFVHHGVVTE-------ECDPYFDSTGCSH------PGCEPAYPTPKCVRKC 314
            TI++I DQG CGSCWAFGAVEA+SDR CIH    +N+ +S                   YP  AW ++   G+V+         C PY     C H      P C     TPKC + C
Sbjct:   95 TIAQIRDQGSCGSCWAFGAVEAMSDRICIHTNGRVNVEVSAEDLLTCCGIQCGDGCNGGYPSGAWNFWTRKGLVSGGVYNSHIGCLPY-TIPPCEHHVNGSRPPCTGEGDTPKCNKMC 211          
BLAST of DR911200 vs. ExPASy Swiss-Prot
Match: CATB_PONAB (Cathepsin B OS=Pongo abelii GN=CTSB PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.630e-13
Identity = 44/118 (37.29%), Postives = 54/118 (45.76%), Query Frame = 3
Query:    6 TISRILDQGHCGSCWAFGAVEALSDRFCIHFGMNLSLSVN--XXXXXXXXXXXXXXXXXYPISAWRYFVHHGVVT-------EECDPYFDSTGCSH------PGCEPAYPTPKCVRKC 314
            TI  I DQG CGSCWAFGAVEA+SDR CIH   ++S+ V+                   YP  AW ++   G+V+         C PY     C H      P C     TPKC + C
Sbjct:   95 TIKEIRDQGSCGSCWAFGAVEAISDRICIHTNAHVSVEVSAEDLLTCCGSMCGDGCNGGYPAEAWNFWTRKGLVSGGLYESHVGCRPY-SIPPCEHHVNGSRPPCTGEGDTPKCSKIC 211          
BLAST of DR911200 vs. ExPASy Swiss-Prot
Match: CATB_MACFA (Cathepsin B OS=Macaca fascicularis GN=CTSB PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.630e-13
Identity = 44/118 (37.29%), Postives = 54/118 (45.76%), Query Frame = 3
Query:    6 TISRILDQGHCGSCWAFGAVEALSDRFCIHFGMNLSLSVN--XXXXXXXXXXXXXXXXXYPISAWRYFVHHGVVT-------EECDPYFDSTGCSH------PGCEPAYPTPKCVRKC 314
            TI  I DQG CGSCWAFGAVEA+SDR CIH   ++S+ V+                   YP  AW ++   G+V+         C PY     C H      P C     TPKC + C
Sbjct:   95 TIKEIRDQGSCGSCWAFGAVEAISDRICIHTNAHVSVEVSAEDLLTCCGIMCGDGCNGGYPAGAWNFWTRKGLVSGGLYDSHVGCRPY-SIPPCEHHVNGSRPPCTGEGDTPKCSKIC 211          
BLAST of DR911200 vs. ExPASy Swiss-Prot
Match: CATB_HUMAN (Cathepsin B OS=Homo sapiens GN=CTSB PE=1 SV=3)

HSP 1 Score: 73.559 bits (179), Expect = 3.630e-13
Identity = 44/118 (37.29%), Postives = 54/118 (45.76%), Query Frame = 3
Query:    6 TISRILDQGHCGSCWAFGAVEALSDRFCIHFGMNLSLSVN--XXXXXXXXXXXXXXXXXYPISAWRYFVHHGVVT-------EECDPYFDSTGCSH------PGCEPAYPTPKCVRKC 314
            TI  I DQG CGSCWAFGAVEA+SDR CIH   ++S+ V+                   YP  AW ++   G+V+         C PY     C H      P C     TPKC + C
Sbjct:   95 TIKEIRDQGSCGSCWAFGAVEAISDRICIHTNAHVSVEVSAEDLLTCCGSMCGDGCNGGYPAEAWNFWTRKGLVSGGLYESHVGCRPY-SIPPCEHHVNGSRPPCTGEGDTPKCSKIC 211          
BLAST of DR911200 vs. ExPASy Swiss-Prot
Match: CATB_BOVIN (Cathepsin B OS=Bos taurus GN=CTSB PE=1 SV=5)

HSP 1 Score: 72.7886 bits (177), Expect = 6.191e-13
Identity = 43/118 (36.44%), Postives = 53/118 (44.92%), Query Frame = 3
Query:    6 TISRILDQGHCGSCWAFGAVEALSDRFCIHFG--MNLSLSVNXXXXXXXXXXXXXXXXXYPISAWRYFVHHGVVT-------EECDPYFDSTGCSH------PGCEPAYPTPKCVRKC 314
            TI  I DQG CGSCWAFGAVEA+SDR CIH    +N+ +S                   +P  AW ++   G+V+         C PY     C H      P C     TPKC + C
Sbjct:   95 TIKEIRDQGSCGSCWAFGAVEAISDRICIHSNGRVNVEVSAEDMLTCCGGECGDGCNGGFPSGAWNFWTKKGLVSGGLYNSHVGCRPY-SIPPCEHHVNGSRPPCTGEGDTPKCSKTC 211          
BLAST of DR911200 vs. ExPASy Swiss-Prot
Match: CTSB_DICDI (Cathepsin B OS=Dictyostelium discoideum GN=ctsB PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.056e-12
Identity = 41/111 (36.94%), Postives = 53/111 (47.75%), Query Frame = 3
Query:    3 STISRILDQGHCGSCWAFGAVEALSDRFCIHFGMNLSLSVNXXXXXXXXXXXXXXXXXYPISAWRYFVHHGVVTEECDPYFDSTGCSHPGCEPAYP-------TPKCVRKC 314
            +TIS+I +Q  CGSCWAFGA E+ +DR CIH   N+ LS                   +  SAW +    G V+EEC PY      + P C PA         TP C ++C
Sbjct:   93 TTISQIQNQARCGSCWAFGATESATDRLCIHNNENVQLSFMDMVTCDETDNGCEGGDAF--SAWNWLRKQGAVSEECLPY------TIPTCPPAQQPCLNFVNTPSCTKEC 195          
BLAST of DR911200 vs. ExPASy Swiss-Prot
Match: CPR4_CAEEL (Cathepsin B-like cysteine proteinase 4 OS=Caenorhabditis elegans GN=cpr-4 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.801e-12
Identity = 47/123 (38.21%), Postives = 57/123 (46.34%), Query Frame = 3
Query:    6 TISRILDQGHCGSCWAFGAVEALSDRFCI--HFGMNLSLSVNXXXXXXXXXXXXXXXXXYPISAWRYFVHHGVVTE-------ECDPYF-----DSTG-CSHPGC-EPAYPTPKCVRKCVKKN 326
            +I+ I DQ  CGSCWAF A EA SDRFCI  +  +N  LS                   YPI+AW+Y V  G  T         C PY      ++ G  + P C +  Y TP CV KC  KN
Sbjct:   96 SINNIRDQSDCGSCWAFAAAEAASDRFCIASNGAVNTLLSAE-DVLSCCSNCGYGCEGGYPINAWKYLVKSGFCTGGSYEAQFGCKPYSLAPCGETVGNVTWPSCPDDGYDTPACVNKCTNKN 217          
The following BLAST results are available for this feature:
BLAST of DR911200 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
CPR6_CAEEL4.288e-1439.67Cathepsin B-like cysteine proteinase 6 OS=Caenorha... [more]
CATB_CHICK1.247e-1342.57Cathepsin B OS=Gallus gallus GN=CTSB PE=2 SV=1[more]
CPR5_CAEEL2.128e-1338.40Cathepsin B-like cysteine proteinase 5 OS=Caenorha... [more]
CATB_RAT2.779e-1337.29Cathepsin B OS=Rattus norvegicus GN=Ctsb PE=1 SV=2[more]
CATB_PONAB3.630e-1337.29Cathepsin B OS=Pongo abelii GN=CTSB PE=2 SV=1[more]
CATB_MACFA3.630e-1337.29Cathepsin B OS=Macaca fascicularis GN=CTSB PE=2 SV... [more]
CATB_HUMAN3.630e-1337.29Cathepsin B OS=Homo sapiens GN=CTSB PE=1 SV=3[more]
CATB_BOVIN6.191e-1336.44Cathepsin B OS=Bos taurus GN=CTSB PE=1 SV=5[more]
CTSB_DICDI1.056e-1236.94Cathepsin B OS=Dictyostelium discoideum GN=ctsB PE... [more]
CPR4_CAEEL1.801e-1238.21Cathepsin B-like cysteine proteinase 4 OS=Caenorha... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_19328 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-27_E06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR911200 ID=DR911200; Name=DR911200; organism=Citrus sinensis; type=EST; length=327bp
GCAGCACCATTAGTAGGATCCTAGATCAGGGCCATTGTGGTTCTTGTTGG
GCTTTTGGTGCTGTTGAAGCGCTATCTGATCGTTTCTGCATCCATTTTGG
CATGAACCTATCTCTATCAGTTAATGATCTTTTAGCCTGCTGTGGCTTTT
TGTGTGGAGATGGTTGTGACGGGGGTTATCCAATTTCTGCATGGCGATAC
TTTGTCCACCATGGTGTTGTTACCGAAGAGTGTGATCCCTACTTTGATAG
TACTGGCTGTTCCCACCCTGGTTGTGAGCCGGCATATCCTACTCCAAAGT
GTGTGAGGAAGTGCGTCAAGAAAAACC
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