FC871162

Overview
NameFC871162
Unique NameFC871162
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length608
Libraries
Library NameType
AbsCFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6585 contig Csv1_Contig6585:1..608. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC871162 vs. ExPASy Swiss-Prot
Match: Y637_PELLD (UPF0301 protein Plut_0637 OS=Pelodictyon luteolum (strain DSM 273) GN=Plut_0637 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.700e-11
Identity = 54/161 (33.54%), Postives = 78/161 (48.45%), Query Frame = 2 
Query:   35 GCLLIATEKLDGVHIFERTVILILSMEPMGPSGIILNRPSLMSIKEMRSTVLDAAGTFS--DRPLFFGGPLEEGL--FLVSPKGGGDEVGKSGVFEQVMEGLYFG-TKETVGCAAEMVKRNAVGPEDFRFFDGCCGWEKEQLNEEIRAGYWTVAACSPSVI 502
            G LLIA+  L   + F+RTV+++    P G  G ILNRP    ++E       A   F   D PL  GGP++     FL      GD +  S   EQ++ GLY+G  +E +G    ++    + P + RFF G  GW   QL  E   G W  A  +P+++
Sbjct:   13 GKLLIASANLLESN-FKRTVLMMCEHNPQGSLGFILNRPMEFQVRE-------AVAGFDEVDEPLHMGGPVQSNTVHFLHMR---GDLIDGS---EQILPGLYWGGDREELGY---LLNTGVLKPSEIRFFLGYAGWSAGQLEAEFEEGSWYTADATPAMV 156
The following BLAST results are available for this feature:
BLAST of FC871162 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y637_PELLD1.700e-1133.54UPF0301 protein Plut_0637 OS=Pelodictyon luteolum ... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAK2AD06FM1 AbsCFruit1 Citrus sinensis cDNA clone KN0AAK2AD06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC871162 ID=FC871162; Name=FC871162; organism=Citrus sinensis; type=EST; length=608bp
CAAATGGGCTCATACAATCCATGAGCCCGAAAAGGGCTGCTTGCTCATTG
CAACCGAGAAGCTTGACGGGGTCCACATCTTCGAACGGACGGTGATCCTA
ATCTTATCAATGGAGCCCATGGGCCCATCAGGGATCATACTCAACCGGCC
GTCCCTAATGTCCATCAAGGAGATGCGTTCGACGGTGCTAGACGCAGCGG
GGACATTCTCCGACCGACCGTTGTTCTTCGGAGGACCTTTAGAAGAAGGG
TTGTTTTTGGTGAGCCCAAAAGGGGGTGGTGATGAAGTGGGGAAGAGTGG
GGTGTTTGAGCAAGTGATGGAAGGATTGTATTTTGGGACTAAAGAGACTG
TTGGTTGCGCTGCTGAAATGGTGAAGAGAAATGCAGTTGGGCCTGAGGAT
TTTAGGTTCTTCGATGGGTGTTGTGGGTGGGAGAAAGAGCAATTGAATGA
GGAAATTAGGGCTGGTTATTGGACGGTGGCTGCGTGTAGCCCAAGTGTAA
TTGGGCTAGAAAGCGGAACTCTTGGGCTCTGGGAAGAGCTTCTTTGGCTC
ATGGGCCGTACAACAGTTTGGTGAGCCCCGACTCTATTCCTTTGATAGTC
GGGGGCAA
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