EY758156

Overview
NameEY758156
Unique NameEY758156
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length596
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY758156_ssr316 microsatellite EY758156_ssr316:316..327. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig10401 contig Csv1_Contig10401:370..965. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY758156 vs. ExPASy Swiss-Prot
Match: YJBQ_SALTY (UPF0047 protein yjbQ OS=Salmonella typhimurium GN=yjbQ PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.087e-15
Identity = 35/64 (54.69%), Postives = 48/64 (75.00%), Query Frame = 1
Query:   49 SASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGIWLCEHRDAPTPRKVVITLNG 240
            +A+++H  EG DDMP+HIKSS+ G +L +P+  G+L +GTWQGIWL EHR    PRK++ TL G
Sbjct:   74 NAAYEHDYEGADDMPSHIKSSVLGVSLLLPVRQGRLQLGTWQGIWLGEHRIHGGPRKIIATLQG 137          
BLAST of EY758156 vs. ExPASy Swiss-Prot
Match: YJBQ_SALTI (UPF0047 protein yjbQ OS=Salmonella typhi GN=yjbQ PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.087e-15
Identity = 35/64 (54.69%), Postives = 48/64 (75.00%), Query Frame = 1
Query:   49 SASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGIWLCEHRDAPTPRKVVITLNG 240
            +A+++H  EG DDMP+HIKSS+ G +L +P+  G+L +GTWQGIWL EHR    PRK++ TL G
Sbjct:   74 NAAYEHDYEGADDMPSHIKSSVLGVSLLLPVRQGRLQLGTWQGIWLGEHRIHGGPRKIIATLQG 137          
BLAST of EY758156 vs. ExPASy Swiss-Prot
Match: YE72_SCHPO (UPF0047 protein C4A8.02c OS=Schizosaccharomyces pombe GN=SPAC4A8.02c PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 7.049e-15
Identity = 36/65 (55.38%), Postives = 49/65 (75.38%), Query Frame = 1
Query:   49 SASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGIWLCEHRDAPTPRKVVITLNGI 243
            SA ++HT EG DDMPAH+KSS+ G +LT+PIT+G+L++GTWQ I L E R  P  R +V T+ G+
Sbjct:   75 SAGYRHTAEGLDDMPAHVKSSLIGPSLTVPITNGKLSLGTWQDIQLAEFRRQPHSRTIVCTIIGL 139          
BLAST of EY758156 vs. ExPASy Swiss-Prot
Match: YJBQ_ECOLI (UPF0047 protein yjbQ OS=Escherichia coli (strain K12) GN=yjbQ PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.018e-13
Identity = 32/64 (50.00%), Postives = 45/64 (70.31%), Query Frame = 1
Query:   49 SASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGIWLCEHRDAPTPRKVVITLNG 240
            + +++H  EG DDMP+HIKSSM G +L +P+  G++  GTWQGIWL EHR     R+++ TL G
Sbjct:   74 NGNYEHDYEGADDMPSHIKSSMLGTSLVLPVHKGRIQTGTWQGIWLGEHRIHGGSRRIIATLQG 137          
BLAST of EY758156 vs. ExPASy Swiss-Prot
Match: YJBQ_ECO57 (UPF0047 protein yjbQ OS=Escherichia coli O157:H7 GN=yjbQ PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.018e-13
Identity = 32/64 (50.00%), Postives = 45/64 (70.31%), Query Frame = 1
Query:   49 SASWKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGIWLCEHRDAPTPRKVVITLNG 240
            + +++H  EG DDMP+HIKSSM G +L +P+  G++  GTWQGIWL EHR     R+++ TL G
Sbjct:   74 NGNYEHDYEGADDMPSHIKSSMLGTSLVLPVHKGRIQTGTWQGIWLGEHRIHGGSRRIIATLQG 137          
BLAST of EY758156 vs. ExPASy Swiss-Prot
Match: Y1880_SYNY3 (UPF0047 protein sll1880 OS=Synechocystis sp. (strain PCC 6803) GN=sll1880 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 7.294e-12
Identity = 29/61 (47.54%), Postives = 46/61 (75.41%), Query Frame = 1
Query:   58 WKHTLEGPDDMPAHIKSSMFGCTLTIPITDGQLNMGTWQGIWLCEHRDAPTPRKVVITLNG 240
            ++H+ EG DDMPAHI+S++   +  IPI +G+L +GTWQG++L EHR  P  R+V++ ++G
Sbjct:   85 YRHSTEGLDDMPAHIRSALTKTSEHIPIVNGRLGLGTWQGVFLWEHRQRPHQREVIVHVSG 145          
The following BLAST results are available for this feature:
BLAST of EY758156 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
YJBQ_SALTY1.087e-1554.69UPF0047 protein yjbQ OS=Salmonella typhimurium GN=... [more]
YJBQ_SALTI1.087e-1554.69UPF0047 protein yjbQ OS=Salmonella typhi GN=yjbQ P... [more]
YE72_SCHPO7.049e-1555.38UPF0047 protein C4A8.02c OS=Schizosaccharomyces po... [more]
YJBQ_ECOLI1.018e-1350.00UPF0047 protein yjbQ OS=Escherichia coli (strain K... [more]
YJBQ_ECO571.018e-1350.00UPF0047 protein yjbQ OS=Escherichia coli O157:H7 G... [more]
Y1880_SYNY37.294e-1247.54UPF0047 protein sll1880 OS=Synechocystis sp. (stra... [more]
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Properties
Property NameValue
Genbank descriptionCS13-C1-001-040-G10-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY758156 ID=EY758156; Name=EY758156; organism=Citrus sinensis; type=EST; length=596bp
CAGTGCTCGGGCCGGNATTCCCGGCCCGACCCACGCGTCCGGGGGAGATC
AGCTTCTTGGAAGCATACCCTCGAAGGCCCAGATGACATGCCAGCACATA
TTAAATCATCAATGTTTGGTTGCACACTCACGATTCCAATCACAGATGGG
CAGCTAAACATGGGAACTTGGCAGGGAATATGGCTGTGCGAGCATCGCGA
TGCACCCACTCCTCGCAAAGTCGTCATCACTCTCAATGGAATATGATTCA
AATAGGAGACGAGTGCTTTTGTTCTGTTACTTTTCTCCTTTTGACTGAAA
TGGTTAATGGCGTGTAATGAATGAATGTAAACATAGCAAGAAAGAAGTGT
CTATGTTGTTGTTGGGATGATGTATGCAGTGAGGTACATAATTTCCTTAA
TGTATGTAATAAACCCAATCCACCCTTCTTGATATGTATTGCCTTAAGGG
TTGTATCAAAATGTTTTGTTATATCGAAAGTGTTATGGAAGCAGAGACGG
CATTGNCCANAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAGGGNNGGNNGATATAAAAGATACAAGAATAAANAACGNG
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