CN190171

Overview
NameCN190171
Unique NameCN190171
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length457
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CN190171 vs. ExPASy Swiss-Prot
Match: Y1736_ARATH (REF/SRPP-like protein At1g67360 OS=Arabidopsis thaliana GN=At1g67360 PE=2 SV=1)

HSP 1 Score: 60.077 bits (144), Expect = 3.246e-12
Identity = 25/44 (56.82%), Postives = 35/44 (79.55%), Query Frame = -2 
Query:  247 AVPTAAQWSKKYNHLVVEMTKKGYTVFGYLPLVPIDDIAKAFKQ 378
            A+P AA +S +YN LV +MT  GY++ GYLPLVP+DDI KA+++
Sbjct:  165 ALPVAAHFSSRYNDLVTDMTNMGYSLVGYLPLVPVDDIVKAYEK 208

HSP 2 Score: 30.8018 bits (68), Expect = 3.246e-12
Identity = 13/22 (59.09%), Postives = 14/22 (63.64%), Query Frame = -3 
Query:  387 LVTNSVKAWYKLNHYALFHTNG 452
            +VTNSVK W KLN Y   H  G
Sbjct:  141 VVTNSVKVWAKLNQYKPIHAMG 162
The following BLAST results are available for this feature:
BLAST of CN190171 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y1736_ARATH3.246e-1256.82REF/SRPP-like protein At1g67360 OS=Arabidopsis tha... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS06_0003A14_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0003A14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN190171 ID=CN190171; Name=CN190171; organism=Citrus sinensis; type=EST; length=457bp
ATCTCCATTTCACATATGGGGAAAACCAAGTCTTAAAGGTCATTTACAGA
TTACAAACCATACTGCCACTACCCGGCCACACCTTCAAGCCTAGAATTTT
GCAAACCAGACCACTAGATGAAGCAAACTCATCAGACAAAAAGTAAATTC
TTAGTCAGAATCTGAGCTTGAATCCTTTTCCTTTGCATCTTCTTTCTTTG
GAGCATCTTCTTTCTCTGGAGCATCTTCTTTCTTGGGAGCTTCACTCTGC
TTAAAAGCTTTGGCTATGTCATCAATGGGAACCAAAGGAAGATAGCCAAA
GACTGTGTAACCCTTCTTCGTCATCTCCACGACAAGATGGTTATACTTCT
TGGACCACTGTGCAGCTGTGGGAACAGCCATAATCTGCCATTTGTGTGGA
ACAATGCATAGTGGTTTAGTTTATACCATGCTTTCACGGAATTTGTTACC
AAAAGGT
back to top