CN190060

Overview
NameCN190060
Unique NameCN190060
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length648
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN190060 vs. ExPASy Swiss-Prot
Match: B3GT7_ARATH (Beta-1,3-galactosyltransferase 7 OS=Arabidopsis thaliana GN=B3GALT7 PE=2 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 8.333e-39
Identity = 89/173 (51.45%), Postives = 117/173 (67.63%), Query Frame = 1
Query:  139 KWIPFLCLFCFALGILFSNLTWNPPESDGRPSLNVRRREQQVAVASTDCA--KKAFQDQDVAKEVLKTRGAIHDGSVESDRTLDKPIGQLQMELAASRSSREM-PGLEXXXXXXXXXXRRPKVFVVIGINTAFSSRKRRDSVRDTWMPQGGKLIQLEREKGIIIRFMIGHSAT 648
            KW+PFLC+  FALG +F++ +W P    G   ++   R+ ++ + S DCA  KKA Q++DV  EVL+T  AI D     DR+LDK +  L    +++RSS+EM  G E           R KVF+V+GINTAFSSRKRRDSVR+TWMPQG KL +LE+EKGI+I+FMIGHSAT
Sbjct:   13 KWVPFLCISFFALGAIFTSRSWEPSSDSGSQLISQHHRDHELQIVSDDCAHNKKATQEKDVTGEVLRTHEAIQD-----DRSLDKSVSTL----SSTRSSQEMVDGSETNP--------RKKVFMVMGINTAFSSRKRRDSVRETWMPQGEKLERLEQEKGIVIKFMIGHSAT 168          
BLAST of CN190060 vs. ExPASy Swiss-Prot
Match: B3GT5_ARATH (Probable beta-1,3-galactosyltransferase 5 OS=Arabidopsis thaliana GN=B3GALT5 PE=2 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.054e-33
Identity = 77/171 (45.03%), Postives = 109/171 (63.74%), Query Frame = 1
Query:  142 WIPFLCLFCFALGILFSNLTWNPPESDGRPSLNVRRREQQVAVASTDCA--KKAFQDQDVAKEVLKTRGAIHDGSVESDRTLDKPIGQLQMELAASRSSREMPGLEXXXXXXXXXXRRPKVFVVIGINTAFSSRKRRDSVRDTWMPQGGKLIQLEREKGIIIRFMIGHSAT 648
            W+P LC+ CF LG +F++   +     G   +   RR+Q++ + + D A  KK  QD DV +EVLKT  AI         +LDK +  LQ +L+A+ S +++  +           +  KVF+VIGINTAFSSRKRRDS+R+TWMPQG KL +LE+EKGI+++FMIGHS+T
Sbjct:   15 WVPLLCISCFFLGAIFTSKLRSASSDSGSQLILQHRRDQELKIVTQDYAHEKKKSQDNDVMEEVLKTHKAIE--------SLDKSVSMLQKQLSATHSPQQIVNVSATNSSTEGNQKN-KVFMVIGINTAFSSRKRRDSLRETWMPQGEKLEKLEKEKGIVVKFMIGHSST 176          
BLAST of CN190060 vs. ExPASy Swiss-Prot
Match: B3GT2_ARATH (Probable beta-1,3-galactosyltransferase 2 OS=Arabidopsis thaliana GN=B3GALT2 PE=2 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.575e-29
Identity = 79/175 (45.14%), Postives = 103/175 (58.86%), Query Frame = 1
Query:  139 KWIPFLCLFCFALGILFSNLTWNPPESDGRPSLNVRRREQQVAVASTDCAKKAFQDQDVAKEVLKTRGAIHDGSVESDRTLDKPIGQLQMELAASRSSREM-----PGLEXXXXXXXXXXRRPKVFVVIGINTAFSSRKRRDSVRDTWMPQGGKLIQLEREKGIIIRFMIGHSAT 648
            KW   LCL  F +G+ F+N  WN PES G    +V   E+ + + S  C  KA   ++V ++     G + +  +   +TLDK I  L+MELAA+RS +E      P  +          RR    +V+GINTAFSSRKRRDS+R TWMPQG K  +LE EKGIIIRF+IGHSAT
Sbjct:   18 KWTILLCLGSFCVGMFFTNRMWNIPESKGMSHPSVTEAER-LKLVSEGCNPKALYQKEVKRDPQALFGEVANTHIAL-QTLDKTISSLEMELAAARSVQESLQNGAPLSDDMGKKQPQEQRR--FLMVVGINTAFSSRKRRDSIRATWMPQGEKRKRLEEEKGIIIRFVIGHSAT 188          
BLAST of CN190060 vs. ExPASy Swiss-Prot
Match: B3GT3_ARATH (Probable beta-1,3-galactosyltransferase 3 OS=Arabidopsis thaliana GN=B3GALT3 PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.333e-28
Identity = 79/180 (43.89%), Postives = 100/180 (55.56%), Query Frame = 1
Query:  139 KWIPFLCLFCFALGILFSNLTWNPPESDGRPSLNVRRREQQVAVASTDCAKKAFQDQDVAK-------EVLKTRGAIHDGSVESDRTLDKPIGQLQMELAASRSSREMPGLEXXXXXXXXXXRRP---KVFVVIGINTAFSSRKRRDSVRDTWMPQGGKLIQLEREKGIIIRFMIGHSAT 648
            KW   LC   F  GILF++  W  PES   P  +V    +++ + S  C  K    ++V +       EV KT  AI        +TLDK I  L+MELAA+RS++E               + P   +  +V+GINTAFSSRKRRDSVR TWMP G K  +LE EKGIIIRF+IGHSAT
Sbjct:   19 KWTFLLCFGSFCFGILFTDRMWIIPESKDMPRPSVSTEAERLKLISEGCDPKTLYQKEVNRDPQALFGEVSKTHNAI--------QTLDKTISSLEMELAAARSAQESLVNGAPISNDMEKKQLPGKRRYLMVVGINTAFSSRKRRDSVRTTWMPSGEKRKKLEEEKGIIIRFVIGHSAT 190          
BLAST of CN190060 vs. ExPASy Swiss-Prot
Match: B3GT4_ARATH (Probable beta-1,3-galactosyltransferase 4 OS=Arabidopsis thaliana GN=B3GALT4 PE=1 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.354e-25
Identity = 74/177 (41.81%), Postives = 106/177 (59.89%), Query Frame = 1
Query:  139 KWIPFLCLFCFALGILFSNLTWNPPESDGRPSLNVRRREQQVAVASTDC--AKKAF--QDQDVAKEVLKTRGAIHDGSVESDRTLDKPIGQLQMELAASRSSRE--MPGLEXXXXXXXXXX-RRPKVFVVIGINTAFSSRKRRDSVRDTWMPQGGKLIQLEREKGIIIRFMIGHSAT 648
            KW  FLC+  F  GILFS+  W  PES+   S +    ++++ + S DC  +KK    + +D+  +V K+  AI        +TLDK I +L+ ELA +R+++E  M G              + K  +V+G+NTAFSSRKRRDSVR TWMP G +  +LE EKGI++RF+IGHS+T
Sbjct:   22 KWTLFLCIGFFCAGILFSDRMWPEPESNV-VSRDTVASDERLRLESEDCDSSKKGLKRESKDILGDVYKSPDAI--------QTLDKTISKLETELADARAAQESIMNGSPVSDDFKLPETVTKRKYLMVVGVNTAFSSRKRRDSVRATWMPPGEERKKLEEEKGIVMRFVIGHSST 189          
BLAST of CN190060 vs. ExPASy Swiss-Prot
Match: B3GT1_ARATH (Probable beta-1,3-galactosyltransferase 1 OS=Arabidopsis thaliana GN=B3GALT1 PE=2 SV=2)

HSP 1 Score: 114.005 bits (284), Expect = 6.848e-25
Identity = 73/165 (44.24%), Postives = 95/165 (57.58%), Query Frame = 1
Query:  151 FLCLFCFALGILFSNLTWN-PPESDGRPSLNVRRREQQVAVASTDCAKKAFQDQDVAKEVLKTRGAIHDGSVESDRTLDKPIGQLQMELAASRSSREMPGLEXXXXXXXXXXRRPKVFVVIGINTAFSSRKRRDSVRDTWMPQGGKLIQLEREKGIIIRFMIGHS 642
            F+CL  F LG+ F+N  WN  PE+ G   L+      +++++S+DC KK                 + D    +   LDK I  L+M+L A+R+ RE   L           +R K F+VIGINTAFSSRKRRDSVR TWMPQG  L +LE EKGII+RF+IGHS
Sbjct:   24 FMCLASFCLGMFFTNRMWNIVPEARGISRLS------KLSLSSSDCDKKN----------------VLDYGNNTIGILDKSISNLEMKLVAARAERE--SLSGKFNISNEAKKR-KYFMVIGINTAFSSRKRRDSVRSTWMPQGENLKKLEEEKGIIVRFVIGHS 163          
BLAST of CN190060 vs. ExPASy Swiss-Prot
Match: B3GT8_ARATH (Probable beta-1,3-galactosyltransferase 8 OS=Arabidopsis thaliana GN=B3GALT8 PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 9.256e-22
Identity = 68/175 (38.86%), Postives = 96/175 (54.86%), Query Frame = 1
Query:  139 KWIPFLCLFCFALGILFSNLTWNP---PESDGRPSLNVRRREQQVAVASTDCAKKAFQDQ--DVAKEVLKTRGAIHDGSVESDRTLDKPIGQLQMELAASRSSREMPGLEXXXXXXXXXXRRPKVFVVIGINTAFSSRKRRDSVRDTWMPQGGKLIQLEREKGIIIRFMIGHSAT 648
            K I  LCL  F  G LF + T +    PE +         +  ++     +  +K  + +  D+  EV +T  A+        ++L++ +  L+MELAA+R+S                 R  KVF VIGINTAFSS+KRRDSVR TWMP G KL ++E+EKGI++RF+IGHSAT
Sbjct:    9 KAIIVLCLASFLAGSLFMSRTLSRSYIPEEEDHHLTKHLSKHLEIQKDCDEHKRKLIESKSRDIIGEVSRTHQAV--------KSLERTMSTLEMELAAARTSDRSSEF-WSERSAKNQSRLQKVFAVIGINTAFSSKKRRDSVRQTWMPTGEKLKKIEKEKGIVVRFVIGHSAT 174          
BLAST of CN190060 vs. ExPASy Swiss-Prot
Match: B3GT6_ARATH (Probable beta-1,3-galactosyltransferase 6 OS=Arabidopsis thaliana GN=B3GALT6 PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.517e-21
Identity = 67/177 (37.85%), Postives = 98/177 (55.37%), Query Frame = 1
Query:  139 KWIPFLCLFCFALGILFSNLTWNPPES-DGRPSLNVRRREQQVAVAS-TDCAKKAFQDQDVAKEVLKTRGAIHDGSVESDRTLDKPIGQLQMELAASRSSRE-----MPGLEXXXXXXXXXXRRPKVFVVIGINTAFSSRKRRDSVRDTWMPQGGKLIQLEREKGIIIRFMIGHSAT 648
            +W+  LC+  F LG+L  N      E+ DG    +  + +Q  ++    DC  K   + D+   V  T   I        +TLDK I  L++ELA +R++R       P +            RP++F V+GI TAFSSRKRRDS+R TW+P+G +L +LE EKGII+RF+IGHS++
Sbjct:   17 RWVFVLCISSFLLGVLVVNRLLASFETVDGIERASPEQNDQSRSLNPLVDCESK---EGDILSRVSHTHDVI--------KTLDKTISSLEVELATARAARSDGRDGSPAVAKTVADQSKI--RPRMFFVMGIMTAFSSRKRRDSIRGTWLPKGDELKRLETEKGIIMRFVIGHSSS 180          
The following BLAST results are available for this feature:
BLAST of CN190060 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
B3GT7_ARATH8.333e-3951.45Beta-1,3-galactosyltransferase 7 OS=Arabidopsis th... [more]
B3GT5_ARATH1.054e-3345.03Probable beta-1,3-galactosyltransferase 5 OS=Arabi... [more]
B3GT2_ARATH1.575e-2945.14Probable beta-1,3-galactosyltransferase 2 OS=Arabi... [more]
B3GT3_ARATH1.333e-2843.89Probable beta-1,3-galactosyltransferase 3 OS=Arabi... [more]
B3GT4_ARATH2.354e-2541.81Probable beta-1,3-galactosyltransferase 4 OS=Arabi... [more]
B3GT1_ARATH6.848e-2544.24Probable beta-1,3-galactosyltransferase 1 OS=Arabi... [more]
B3GT8_ARATH9.256e-2238.86Probable beta-1,3-galactosyltransferase 8 OS=Arabi... [more]
B3GT6_ARATH3.517e-2137.85Probable beta-1,3-galactosyltransferase 6 OS=Arabi... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS06_0002N12_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0002N12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN190060 ID=CN190060; Name=CN190060; organism=Citrus sinensis; type=EST; length=648bp
GGACTTTTCAACCCCCATCTTCCCTCCTGCACGCGCTTTCTTTTTCTTCT
CTCTTTTCTTGTTTGCTCCGAGAGAAAAAGGAAAAGAAAAAGAAAGAAAA
TGAAGTATCGAACGAGTACTACTACTATTATCTCCACAAAATGGATTCCT
TTTTTATGCTTATTTTGCTTTGCTCTCGGGATTCTCTTCAGCAACTTGAC
GTGGAACCCACCGGAATCGGATGGACGTCCATCGTTAAACGTGCGCAGAC
GTGAGCAGCAAGTGGCAGTTGCTTCAACTGATTGCGCTAAAAAAGCTTTT
CAAGATCAAGATGTGGCGAAGGAAGTTTTGAAAACCCGTGGAGCAATTCA
TGATGGTTCTGTTGAATCGGATAGGACTTTGGACAAGCCGATTGGGCAGC
TTCAGATGGAGCTGGCTGCTTCCCGGAGTAGTCGGGAAATGCCTGGCTTG
GAAAGTTCTGCTGCCAATGCAAGTACGAACTCCAGAAGGCCAAAAGTTTT
CGTGGTTATTGGAATTAATACTGCTTTTAGTAGTAGGAAGCGACGTGATT
CTGTTAGGGACACTTGGATGCCTCAAGGGGGAAAACTTATTCAATTAGAA
CGTGAGAAGGGAATAATCATCCGATTCATGATTGGCCACAGTGCGACA
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