CN190051

Overview
NameCN190051
Unique NameCN190051
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length396
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN190051 vs. ExPASy Swiss-Prot
Match: RL27_MAGSA (50S ribosomal protein L27 OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) GN=rpmA PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.903e-15
Identity = 40/57 (70.18%), Postives = 45/57 (78.95%), Query Frame = -1
Query:  226 GERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVEP 396
            GE VIPGNIIVRQRGT+F+PG  VGMGKDHTL+A   G+V F KHK  GR +V VEP
Sbjct:   28 GELVIPGNIIVRQRGTKFYPGTNVGMGKDHTLFATAMGKVSF-KHKAEGRTFVVVEP 83          
BLAST of CN190051 vs. ExPASy Swiss-Prot
Match: RL27_BART1 (50S ribosomal protein L27 OS=Bartonella tribocorum (strain CIP 105476 / IBS 506) GN=rpmA PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.441e-14
Identity = 38/57 (66.67%), Postives = 45/57 (78.95%), Query Frame = -1
Query:  226 GERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVEP 396
            GE VI GNIIVRQRGTR+HPGD VG+GKDHTL+AL EG+V F++ K   R +V V P
Sbjct:   28 GESVIAGNIIVRQRGTRWHPGDNVGIGKDHTLFALSEGKVSFQR-KAGNRSYVSVIP 83          
BLAST of CN190051 vs. ExPASy Swiss-Prot
Match: RL27_COXBU (50S ribosomal protein L27 OS=Coxiella burnetii GN=rpmA PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.882e-14
Identity = 36/59 (61.02%), Postives = 45/59 (76.27%), Query Frame = -1
Query:  220 GERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVEPKE 396
            GERV+ GNIIVRQRGT + PG+ +GMG+DHTLYAL EG+VKF +     R +V +EP E
Sbjct:   28 GERVLAGNIIVRQRGTHYRPGENMGMGRDHTLYALIEGKVKFTRKGPKKRNFVSIEPLE 86          
BLAST of CN190051 vs. ExPASy Swiss-Prot
Match: RL27_COXBR (50S ribosomal protein L27 OS=Coxiella burnetii (strain RSA 331 / Henzerling II) GN=rpmA PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.882e-14
Identity = 36/59 (61.02%), Postives = 45/59 (76.27%), Query Frame = -1
Query:  220 GERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVEPKE 396
            GERV+ GNIIVRQRGT + PG+ +GMG+DHTLYAL EG+VKF +     R +V +EP E
Sbjct:   28 GERVLAGNIIVRQRGTHYRPGENMGMGRDHTLYALIEGKVKFTRKGPKKRNFVSIEPLE 86          
BLAST of CN190051 vs. ExPASy Swiss-Prot
Match: RL27_COXB2 (50S ribosomal protein L27 OS=Coxiella burnetii (strain CbuG_Q212) GN=rpmA PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.882e-14
Identity = 36/59 (61.02%), Postives = 45/59 (76.27%), Query Frame = -1
Query:  220 GERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVEPKE 396
            GERV+ GNIIVRQRGT + PG+ +GMG+DHTLYAL EG+VKF +     R +V +EP E
Sbjct:   28 GERVLAGNIIVRQRGTHYRPGENMGMGRDHTLYALIEGKVKFTRKGPKKRNFVSIEPLE 86          
BLAST of CN190051 vs. ExPASy Swiss-Prot
Match: RL27_COXB1 (50S ribosomal protein L27 OS=Coxiella burnetii (strain CbuK_Q154) GN=rpmA PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.882e-14
Identity = 36/59 (61.02%), Postives = 45/59 (76.27%), Query Frame = -1
Query:  220 GERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVEPKE 396
            GERV+ GNIIVRQRGT + PG+ +GMG+DHTLYAL EG+VKF +     R +V +EP E
Sbjct:   28 GERVLAGNIIVRQRGTHYRPGENMGMGRDHTLYALIEGKVKFTRKGPKKRNFVSIEPLE 86          
BLAST of CN190051 vs. ExPASy Swiss-Prot
Match: RL27_MARMM (50S ribosomal protein L27 OS=Maricaulis maris (strain MCS10) GN=rpmA PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.458e-14
Identity = 39/57 (68.42%), Postives = 45/57 (78.95%), Query Frame = -1
Query:  226 GERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVEP 396
            G+ VIPGNIIVRQRGT+ +PG  VGMGKDHTL+AL EGRV F K K  G+ +V VEP
Sbjct:   28 GQEVIPGNIIVRQRGTKVNPGANVGMGKDHTLFALTEGRVVFAK-KSGGKAFVSVEP 83          
BLAST of CN190051 vs. ExPASy Swiss-Prot
Match: RL27_COXBN (50S ribosomal protein L27 OS=Coxiella burnetii (strain Dugway 5J108-111) GN=rpmA PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.210e-14
Identity = 36/59 (61.02%), Postives = 45/59 (76.27%), Query Frame = -1
Query:  220 GERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVEPKE 396
            GERV+ GNIIVRQRGT + PG+ +GMG+DHTLYAL EG+VKF +     R +V +EP E
Sbjct:   28 GERVLAGNIIVRQRGTHYRPGENMGMGRDHTLYALIEGKVKFIRKGPKKRNFVSIEPLE 86          
BLAST of CN190051 vs. ExPASy Swiss-Prot
Match: RL27_VIBPA (50S ribosomal protein L27 OS=Vibrio parahaemolyticus GN=rpmA PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.192e-14
Identity = 36/56 (64.29%), Postives = 44/56 (78.57%), Query Frame = -1
Query:  229 GERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVE 396
            GE V+ GNIIVRQRGT+FH G+ VG+GKDHTL+AL EG+VKFE      RK+V +E
Sbjct:   28 GESVLAGNIIVRQRGTKFHAGNNVGIGKDHTLFALTEGKVKFEVKGPKNRKFVSIE 83          
BLAST of CN190051 vs. ExPASy Swiss-Prot
Match: RL27_VIBHB (50S ribosomal protein L27 OS=Vibrio harveyi (strain ATCC BAA-1116 / BB120) GN=rpmA PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.192e-14
Identity = 36/56 (64.29%), Postives = 44/56 (78.57%), Query Frame = -1
Query:  229 GERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVE 396
            GE V+ GNIIVRQRGT+FH G+ VG+GKDHTL+AL EG+VKFE      RK+V +E
Sbjct:   28 GESVLAGNIIVRQRGTKFHAGNNVGIGKDHTLFALTEGKVKFEVKGPKNRKFVSIE 83          
The following BLAST results are available for this feature:
BLAST of CN190051 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 333
Match NameE-valueIdentityDescription
RL27_MAGSA2.903e-1570.1850S ribosomal protein L27 OS=Magnetospirillum magn... [more]
RL27_BART11.441e-1466.6750S ribosomal protein L27 OS=Bartonella tribocorum... [more]
RL27_COXBU1.882e-1461.0250S ribosomal protein L27 OS=Coxiella burnetii GN=... [more]
RL27_COXBR1.882e-1461.0250S ribosomal protein L27 OS=Coxiella burnetii (st... [more]
RL27_COXB21.882e-1461.0250S ribosomal protein L27 OS=Coxiella burnetii (st... [more]
RL27_COXB11.882e-1461.0250S ribosomal protein L27 OS=Coxiella burnetii (st... [more]
RL27_MARMM2.458e-1468.4250S ribosomal protein L27 OS=Maricaulis maris (str... [more]
RL27_COXBN3.210e-1461.0250S ribosomal protein L27 OS=Coxiella burnetii (st... [more]
RL27_VIBPA4.192e-1464.2950S ribosomal protein L27 OS=Vibrio parahaemolytic... [more]
RL27_VIBHB4.192e-1464.2950S ribosomal protein L27 OS=Vibrio harveyi (strai... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0002N07_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0002N07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN190051 ID=CN190051; Name=CN190051; organism=Citrus sinensis; type=EST; length=396bp
GCTTCATGGTGAGCGTGGGAAATTTATATTCAATTCTGGTCCTTAATTTC
AGTAAAAACCCATATTTATTTCAGTTTCTGTCCAGAAAGGAAGAAGAAAA
AGAGAAAAGAGTAGCTTGATTAAATAATCAAATAAAATGGGGTTTTATGC
AGCCGTCTCCAGCTGAGGTGAAGAAGCATTTGCCGTTGCATTTGCATATA
GAGGATGTAGCACATGGCCTTCCTTGGGTTCAACATGCACCCACTTGCGA
CCGCTAAGCTTGTGTTTTTCAAATTTGACACGTCCTTCCTTAAGGGCATA
AAGGGTGTGATCCTTGCCCATCCCTACATAATCTCCAGGATGAAAGCGTG
TTCCTCGCTGACGAACAATAATGTTTCCAGGTATCACCCTCTCACC
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