CN190011

Overview
NameCN190011
Unique NameCN190011
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length455
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CN190011 vs. ExPASy Swiss-Prot
Match: CX5C3_ARATH (Probable cytochrome c oxidase subunit 5C-3 OS=Arabidopsis thaliana GN=At5g61310 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 2.412e-14
Identity = 37/55 (67.27%), Postives = 41/55 (74.55%), Query Frame = -2 
Query:  257 MAGHKIAHATLKGPSVVKEICXXXXXXXXXXXLWKMNQWNNQRKSRVFYDLLEKG 421
            MAGHKIAHATLKGPSVVKE+            LWKM+ WN QRK+RVFYDLLE+G
Sbjct:    1 MAGHKIAHATLKGPSVVKELVIGLTLGLAAGGLWKMHHWNEQRKTRVFYDLLERG 55
[Close]
BLAST of CN190011 vs. ExPASy Swiss-Prot
Match: CX5C2_ARATH (Cytochrome c oxidase subunit 5C-2 OS=Arabidopsis thaliana GN=At3g62400 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 9.166e-14
Identity = 35/55 (63.64%), Postives = 40/55 (72.73%), Query Frame = -2 
Query:  257 MAGHKIAHATLKGPSVVKEICXXXXXXXXXXXLWKMNQWNNQRKSRVFYDLLEKG 421
            MAGHK+AHATLKGPSVVKE+            LWKM+ WN QRK+R FYDLLE+G
Sbjct:    1 MAGHKVAHATLKGPSVVKELIIGLTLGLAAGGLWKMHHWNEQRKTRTFYDLLERG 55
[Close]
BLAST of CN190011 vs. ExPASy Swiss-Prot
Match: CX5C1_ARATH (Probable cytochrome c oxidase subunit 5C-1 OS=Arabidopsis thaliana GN=At2g47380 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.197e-13
Identity = 35/55 (63.64%), Postives = 40/55 (72.73%), Query Frame = -2 
Query:  257 MAGHKIAHATLKGPSVVKEICXXXXXXXXXXXLWKMNQWNNQRKSRVFYDLLEKG 421
            MAGHK+AHATLKGPSVVKE+            LWKM+ WN QRK+R FYDLLE+G
Sbjct:    1 MAGHKVAHATLKGPSVVKELFIGLALGLAAGGLWKMHHWNEQRKTRTFYDLLERG 55
[Close]
BLAST of CN190011 vs. ExPASy Swiss-Prot
Match: COX5C_ORYSJ (Cytochrome c oxidase subunit 5C OS=Oryza sativa subsp. japonica GN=COX5C PE=3 SV=3)

HSP 1 Score: 75.485 bits (184), Expect = 1.197e-13
Identity = 36/55 (65.45%), Postives = 40/55 (72.73%), Query Frame = -2 
Query:  257 MAGHKIAHATLKGPSVVKEICXXXXXXXXXXXLWKMNQWNNQRKSRVFYDLLEKG 421
            MAG +IAHATLKGPSVVKEIC           LWKM+ WN QRK+R FYD+LEKG
Sbjct:    1 MAGGRIAHATLKGPSVVKEICIGLTLGLVAGGLWKMHHWNEQRKTRSFYDMLEKG 55
[Close]
BLAST of CN190011 vs. ExPASy Swiss-Prot
Match: COX5C_HORVU (Cytochrome c oxidase subunit 5C OS=Hordeum vulgare GN=COX5C PE=3 SV=3)

HSP 1 Score: 70.8626 bits (172), Expect = 2.949e-12
Identity = 33/55 (60.00%), Postives = 39/55 (70.91%), Query Frame = -2 
Query:  257 MAGHKIAHATLKGPSVVKEICXXXXXXXXXXXLWKMNQWNNQRKSRVFYDLLEKG 421
            MAG ++AHATLKGPSVVKEI            +WKM+ WN QRK+R FYD+LEKG
Sbjct:    1 MAGGRVAHATLKGPSVVKEIFIGLTLGLVAGGMWKMHHWNEQRKTRSFYDMLEKG 55
[Close]
BLAST of CN190011 vs. ExPASy Swiss-Prot
Match: CX5C2_HELAN (Cytochrome c oxidase subunit 5C-2 OS=Helianthus annuus GN=COX5C2 PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 5.561e-11
Identity = 31/55 (56.36%), Postives = 36/55 (65.45%), Query Frame = -2 
Query:  257 MAGHKIAHATLKGPSVVKEICXXXXXXXXXXXLWKMNQWNNQRKSRVFYDLLEKG 421
            M G ++AH  LKGPSVVKE+            LWKM+ WN QRK+R FYDLLEKG
Sbjct:    1 MGGGRVAHPVLKGPSVVKELVIGTVLGLAAGGLWKMHHWNEQRKTRAFYDLLEKG 55
The following BLAST results are available for this feature:
BLAST of CN190011 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
CX5C3_ARATH2.412e-1467.27Probable cytochrome c oxidase subunit 5C-3 OS=Arab... [more]
CX5C2_ARATH9.166e-1463.64Cytochrome c oxidase subunit 5C-2 OS=Arabidopsis t... [more]
CX5C1_ARATH1.197e-1363.64Probable cytochrome c oxidase subunit 5C-1 OS=Arab... [more]
COX5C_ORYSJ1.197e-1365.45Cytochrome c oxidase subunit 5C OS=Oryza sativa su... [more]
COX5C_HORVU2.949e-1260.00Cytochrome c oxidase subunit 5C OS=Hordeum vulgare... [more]
CX5C2_HELAN5.561e-1156.36Cytochrome c oxidase subunit 5C-2 OS=Helianthus an... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS06_0002M09_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0002M09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN190011 ID=CN190011; Name=CN190011; organism=Citrus sinensis; type=EST; length=455bp
TTTTTTTTTTTTTTTTTAAGTAACAAGACAGATAATGCTCGATGAAGAGA
ACCAAGAATCTTTACAATTTCATAACCAACAATCAGTCAAGTCTCAGAAA
AGAAAATTTATTTGTTGAAAACCCAAACTATGGAAGATCATGTGAGATCT
AGGCGCCAAATAAGGAGAATCCAAATTATCAGAGTACCATTGAAGCCATC
CACATCATCACCGTGATAACGTAAACACTTTATTCTTCTACAACAACGCT
AACTTCACCTTTCTCTAGCAAGTCATAAAATACCCTTGACTTTCTTTGAT
TATTCCACTGATTCATCTTCCAAAGACCACCAGCAGCCAGCCCCAGTGTA
ATTCCTAAACATATCTCCTTGACAACGCTTGGACCTTTCAAGGTGGCATG
AGCAATCTTGTGGCCAGCCATTTCACTTCTAGTTAAATGCTATAAACCCG
GGCGG
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