CN190004

Overview
NameCN190004
Unique NameCN190004
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length735
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN190004 vs. ExPASy Swiss-Prot
Match: AROD2_ARATH (Arogenate dehydratase/prephenate dehydratase 2, chloroplastic OS=Arabidopsis thaliana GN=ADT2 PE=1 SV=1)

HSP 1 Score: 246.514 bits (628), Expect = 1.104e-64
Identity = 121/135 (89.63%), Postives = 126/135 (93.33%), Query Frame = 1
Query:  331 PLSSAQFSNFVSNGSRLRVAYQGVRGAYSESAAEKAYPNCEAVPCEQFDTAFEAVERWLVDRAVLPIENSLGGSIHRNYDLLLRHRLHIVGEVKFAVRHCLLANPGVKVEDLKRVLSHPQALAXCENTLTKLGLV 735
            PLSS Q +  VSNGSR+RVAYQGVRGAYSESAAEKAYPNCEAVPCE+FDTAFEAVERWLVDRAVLPIENSLGGSIHRNYDLLLRH LHIVGEVK AVRHCLLAN GV +EDL+RVLSHPQALA CENTLTKLGLV
Sbjct:   83 PLSSNQLTESVSNGSRVRVAYQGVRGAYSESAAEKAYPNCEAVPCEEFDTAFEAVERWLVDRAVLPIENSLGGSIHRNYDLLLRHNLHIVGEVKLAVRHCLLANHGVNIEDLRRVLSHPQALAQCENTLTKLGLV 217          
BLAST of CN190004 vs. ExPASy Swiss-Prot
Match: AROD6_ARATH (Arogenate dehydratase/prephenate dehydratase 6, chloroplastic OS=Arabidopsis thaliana GN=ADT6 PE=1 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 8.209e-52
Identity = 98/134 (73.13%), Postives = 111/134 (82.84%), Query Frame = 1
Query:  331 PLSSAQFSNFVSNGSRLRVAYQGVRGAYSESAAEKAYPNCEAVPCEQFDTAFEAVERWLVDRAVLPIENSLGGSIHRNYDLLLRHRLHIVGEVKFAVRHCLLANPGVKVEDLKRVLSHPQALAXCENTLTKLGL 732
            PLS    S    +GS LRVAYQGV GAYSE+AA KAYPNC+A+PC+QF+ AF+AVE W+ DRAVLP+ENSLGGSIHRNYDLLLRHRLHIVGEV+  V HCLLA PGV+ E L RV+SHPQ LA CE+TLTKLGL
Sbjct:  100 PLSMTDLSPAPMHGSNLRVAYQGVPGAYSEAAAGKAYPNCQAIPCDQFEVAFQAVELWIADRAVLPVENSLGGSIHRNYDLLLRHRLHIVGEVQLPVHHCLLALPGVRKEFLTRVISHPQGLAQCEHTLTKLGL 233          
BLAST of CN190004 vs. ExPASy Swiss-Prot
Match: AROD3_ARATH (Arogenate dehydratase 3, chloroplastic OS=Arabidopsis thaliana GN=ADT3 PE=1 SV=1)

HSP 1 Score: 202.986 bits (515), Expect = 1.400e-51
Identity = 97/134 (72.39%), Postives = 112/134 (83.58%), Query Frame = 1
Query:  331 PLSSAQFSNFVSNGSRLRVAYQGVRGAYSESAAEKAYPNCEAVPCEQFDTAFEAVERWLVDRAVLPIENSLGGSIHRNYDLLLRHRLHIVGEVKFAVRHCLLANPGVKVEDLKRVLSHPQALAXCENTLTKLGL 732
            PLS +  S    +GS LRVAYQGV GAYSE+AA KAYPNC+A+PC+QF+ AF+AVE W+ DRAVLP+ENSLGGSIHRNYDLLLRHRLHIVGEV+  V HCL+A PGV+ E L RV+SHPQ LA CE+TLTKLGL
Sbjct:  105 PLSISDLSPAPMHGSNLRVAYQGVPGAYSEAAAGKAYPNCQAIPCDQFEVAFQAVELWIADRAVLPVENSLGGSIHRNYDLLLRHRLHIVGEVQLPVHHCLIALPGVRKEFLTRVISHPQGLAQCEHTLTKLGL 238          
BLAST of CN190004 vs. ExPASy Swiss-Prot
Match: AROD5_ARATH (Arogenate dehydratase 5, chloroplastic OS=Arabidopsis thaliana GN=ADT5 PE=1 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 4.216e-48
Identity = 93/132 (70.45%), Postives = 107/132 (81.06%), Query Frame = 1
Query:  331 PLSSAQFSNFVSNGSRLRVAYQGVRGAYSESAAEKAYPNCEAVPCEQFDTAFEAVERWLVDRAVLPIENSLGGSIHRNYDLLLRHRLHIVGEVKFAVRHCLLANPGVKVEDLKRVLSHPQALAXCENTLTKL 726
            PL+    S   S+GS LRVAYQGV GAYSE+AA KAYPN EA+PC+QFD AF+AVE W+ DRAVLP+ENSLGGSIHRNYDLLLRHRLHIVGEV+  V HCLLA PGV+ + + RV+SHPQALA  E +L KL
Sbjct:  110 PLTITDLSPAPSHGSTLRVAYQGVPGAYSEAAAGKAYPNSEAIPCDQFDVAFQAVELWIADRAVLPVENSLGGSIHRNYDLLLRHRLHIVGEVQIPVHHCLLALPGVRTDCITRVISHPQALAQTEGSLNKL 241          
BLAST of CN190004 vs. ExPASy Swiss-Prot
Match: AROD4_ARATH (Arogenate dehydratase 4, chloroplastic OS=Arabidopsis thaliana GN=ADT4 PE=1 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 2.092e-47
Identity = 91/132 (68.94%), Postives = 107/132 (81.06%), Query Frame = 1
Query:  331 PLSSAQFSNFVSNGSRLRVAYQGVRGAYSESAAEKAYPNCEAVPCEQFDTAFEAVERWLVDRAVLPIENSLGGSIHRNYDLLLRHRLHIVGEVKFAVRHCLLANPGVKVEDLKRVLSHPQALAXCENTLTKL 726
            PL+    S    +GS LRVAYQGV GAYSE+AA KAYPNC+A+PC+QFD AF+AVE W+ DRAVLP+ENSLGGSIHRNYDLLLRHRLHIVGEV+  V HCLLA PGV+ + + RV+SHPQALA  E++L  L
Sbjct:  109 PLTITDLSPAPLHGSSLRVAYQGVPGAYSEAAAGKAYPNCDAIPCDQFDVAFQAVELWIADRAVLPVENSLGGSIHRNYDLLLRHRLHIVGEVQIPVHHCLLALPGVRTDCVSRVISHPQALAQTEHSLDVL 240          
BLAST of CN190004 vs. ExPASy Swiss-Prot
Match: AROD1_ARATH (Arogenate dehydratase/prephenate dehydratase 1, chloroplastic OS=Arabidopsis thaliana GN=ADT1 PE=1 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 3.021e-46
Identity = 88/134 (65.67%), Postives = 107/134 (79.85%), Query Frame = 1
Query:  331 PLSSAQFSNFVSNGSRLRVAYQGVRGAYSESAAEKAYPNCEAVPCEQFDTAFEAVERWLVDRAVLPIENSLGGSIHRNYDLLLRHRLHIVGEVKFAVRHCLLANPGVKVEDLKRVLSHPQALAXCENTLTKLGL 732
            PL++    +   + S++R+++QG+ GAYSE+AA KA+PNCE VPCEQF+ AF+AVE WLVD+AVLPIENS+GGSIHRNYDLLLRHRLHIV EV   V HCLL  PGVK ED+K VLSHPQAL  C N+L  LG+
Sbjct:   90 PLTANSLYSSDGDDSKVRISFQGIPGAYSETAALKAFPNCETVPCEQFEAAFQAVELWLVDKAVLPIENSVGGSIHRNYDLLLRHRLHIVQEVHLPVNHCLLGVPGVKKEDIKCVLSHPQALDQCVNSLNNLGI 223          
BLAST of CN190004 vs. ExPASy Swiss-Prot
Match: PHEA_BUCAP (P-protein OS=Buchnera aphidicola subsp. Schizaphis graminum GN=pheA PE=4 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.112e-15
Identity = 48/145 (33.10%), Postives = 75/145 (51.72%), Query Frame = 1
Query:  310 RLVCVSGPLSSAQFSNFVSNGSRLRVA---YQGVRGAYSESAA----EKAYPNCEAVPCEQFDTAFEAVERWLVDRAVLPIENSLGGSIHRNYDLLLRHRLHIVGEVKFAVRHCLLANPGVKVEDLKRVLSHPQALAXCENTLTK 723
            +L+     L+  +  N   N + L +A   + G +G+YS  AA    E+ +  C    C  F+   ++VE    D AVLPIENS  G I+  +D+L +  L I+GE+  ++ HCLLA   +++  +K V SHPQ    C   + K
Sbjct:   78 QLIIEESVLTQKKLLNKFCNDNNLDLASFSFLGPKGSYSHIAASQYAEQNFKTCIENACLSFNEVIQSVENNQTDYAVLPIENSCSGFINEIFDILKKTNLFIIGEINISINHCLLAIKKIELNKIKAVYSHPQPFQQCSYFIKK 222          
BLAST of CN190004 vs. ExPASy Swiss-Prot
Match: PHEA_HAEIN (P-protein OS=Haemophilus influenzae GN=pheA PE=4 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.335e-14
Identity = 41/123 (33.33%), Postives = 64/123 (52.03%), Query Frame = 1
Query:  379 LRVAYQGVRGAYSESAAEKAYPNCEA----VPCEQFDTAFEAVERWLVDRAVLPIENSLGGSIHRNYDLLLRHRLHIVGEVKFAVRHCLLANPGVKVEDLKRVLSHPQALAXCENTLTKLGLV 735
            L +A+ G RG+YS  AA       +     + C+ F+  FE V+    D  VLP+EN+  G+I+  YDLL    L +VGE+ + ++HC+L N    +  +  + SHPQ +  C   +  L  V
Sbjct:  104 LHIAFLGKRGSYSNLAARNYAARYQKQFVELGCQSFEQVFEKVQTGEADFGVLPLENTTSGAINEVYDLLQHTDLSLVGELAYPIKHCVLVNDKTDLNQIDTLYSHPQVIQQCSQFIHSLDRV 226          
BLAST of CN190004 vs. ExPASy Swiss-Prot
Match: PHEA_ENTAG (P-protein OS=Enterobacter agglomerans GN=pheA PE=4 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.873e-14
Identity = 41/118 (34.75%), Postives = 64/118 (54.24%), Query Frame = 1
Query:  382 RVAYQGVRGAYSESAAE----KAYPNCEAVPCEQFDTAFEAVERWLVDRAVLPIENSLGGSIHRNYDLLLRHRLHIVGEVKFAVRHCLLANPGVKVEDLKRVLSHPQALAXCENTLTK 723
            R+A+ G +G+YS  AA     + + +     C +F    + VE  + D AV+PIEN+  GSI+  YDLL +  L IVGE+   + HC+L N    ++ ++ V SHPQ    C   + +
Sbjct:  105 RIAFLGPKGSYSHLAARNYASRHFDSMVECGCLKFHDIIKQVENGVADYAVMPIENTSSGSINDVYDLLQQTSLSIVGELTLPIDHCVLVNGPTDLQQIETVYSHPQPFQQCSQFINR 222          
BLAST of CN190004 vs. ExPASy Swiss-Prot
Match: PHEA_PSEAE (P-protein OS=Pseudomonas aeruginosa GN=pheA PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.582e-13
Identity = 40/114 (35.09%), Postives = 61/114 (53.51%), Query Frame = 1
Query:  379 LRVAYQGVRGAYSESAAEKAYPNCE-AVPCEQFDTAFEAVERWLVDRAVLPIENSLGGSIHRNYDLLLRHRLHIVGEVKFAVRHCLLANPGVKVEDLKRVLSHPQALAXCENTL 717
            L+VAY G  G ++++AA K + N   + P    D  F  V    V+  V+P+ENS  G+++   D  L H + I GEV+  + H LL     K +++ R+ SH Q+LA C   L
Sbjct:   95 LKVAYLGPEGTFTQAAALKHFGNAVISTPMAAIDEVFREVAAGAVNFGVVPVENSTEGAVNHTLDSFLEHDMVICGEVELRIHHHLLVGETTKTDNITRIYSHAQSLAQCRKWL 208          
The following BLAST results are available for this feature:
BLAST of CN190004 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
AROD2_ARATH1.104e-6489.63Arogenate dehydratase/prephenate dehydratase 2, ch... [more]
AROD6_ARATH8.209e-5273.13Arogenate dehydratase/prephenate dehydratase 6, ch... [more]
AROD3_ARATH1.400e-5172.39Arogenate dehydratase 3, chloroplastic OS=Arabidop... [more]
AROD5_ARATH4.216e-4870.45Arogenate dehydratase 5, chloroplastic OS=Arabidop... [more]
AROD4_ARATH2.092e-4768.94Arogenate dehydratase 4, chloroplastic OS=Arabidop... [more]
AROD1_ARATH3.021e-4665.67Arogenate dehydratase/prephenate dehydratase 1, ch... [more]
PHEA_BUCAP2.112e-1533.10P-protein OS=Buchnera aphidicola subsp. Schizaphis... [more]
PHEA_HAEIN2.335e-1433.33P-protein OS=Haemophilus influenzae GN=pheA PE=4 S... [more]
PHEA_ENTAG8.873e-1434.75P-protein OS=Enterobacter agglomerans GN=pheA PE=4... [more]
PHEA_PSEAE2.582e-1335.09P-protein OS=Pseudomonas aeruginosa GN=pheA PE=3 S... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0002M04_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0002M04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN190004 ID=CN190004; Name=CN190004; organism=Citrus sinensis; type=EST; length=735bp
GAGGCTGAGTCTCGCTGTCTCACGCGTTGATTAATGGCGGCCTCCGTTGC
GCGATCACAGCTGACCCCACTTTCGCGACAGATCACTGCTAAACCCTCTC
AGTCGGATCAAACACCAAAATGCATCGTCAGATTCCGTCCGCTTAACATC
CCACGGCGGTTTAACGTTGCCGTTAAGGCCTCTATTAACCGAAACGATGA
GAAAATCGGCGGTAACAATAACAAAACCGCTCCGGCGCTTCACCCGCAGA
GCATTCTCGATGATGATGAAGAGGACGCCGCTTCGAATGATTCGTTGAAT
TCGCTTCCCCGTTTGGTTTGTGTTTCAGGGCCTTTGTCTTCGGCTCAGTT
TTCAAATTTTGTATCCAACGGGTCCCGCCTTCGAGTTGCGTACCAGGGAG
TTCGTGGAGCTTACAGCGAGTCAGCAGCAGAGAAAGCATACCCAAATTGC
GAAGCGGTTCCTTGCGAGCAATTTGACACTGCTTTTGAAGCTGTCGAGAG
GTGGCTTGTAGACAGAGCAGTTTTACCCATTGAGAATTCTTTGGGTGGCA
GCATCCACAGAAATTATGATCTCTTACTCCGGCACAGGTTGCACATAGTA
GGGGAAGTTAAATTTGCTGTCCGACACTGCCTACTAGCCAATCCTGGTGT
TAAAGTTGAGGACTTGAAAAGGGTTCTAAGCCATCCTCAGGCTCTTGCTN
CATGTGAGAACACACTAACGAAATTAGGGTTAGTC
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