CN189999

Overview
NameCN189999
Unique NameCN189999
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length444
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CN189999 vs. ExPASy Swiss-Prot
Match: EF1G_PRUAV (Elongation factor 1-gamma OS=Prunus avium PE=2 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 5.154e-35
Identity = 65/78 (83.33%), Postives = 72/78 (92.31%), Query Frame = -1 
Query:  211 FGKMLIIGNEPPYKVKGLWLFRGPEIPKFVMDECYDMELYDWKKADISDEEQKERVNQMIEDHEPFEGEALLDAKCFK 444
            FGKML+IG+EPP+KVKGLWLFRG EIP FVM+ECYDMELY+W K D+SDE QKERVNQ+IED EPFEGEALLDAKCFK
Sbjct:  345 FGKMLVIGSEPPFKVKGLWLFRGQEIPPFVMEECYDMELYNWTKVDLSDENQKERVNQVIEDQEPFEGEALLDAKCFK 422
[Close]
BLAST of CN189999 vs. ExPASy Swiss-Prot
Match: EF1G1_ORYSJ (Elongation factor 1-gamma 1 OS=Oryza sativa subsp. japonica GN=Os02g0220600 PE=2 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 5.154e-35
Identity = 67/78 (85.90%), Postives = 72/78 (92.31%), Query Frame = -1 
Query:  211 FGKMLIIGNEPPYKVKGLWLFRGPEIPKFVMDECYDMELYDWKKADISDEEQKERVNQMIEDHEPFEGEALLDAKCFK 444
            FGKML+IG+EPP+KVKGLWLFRGPEIPKFVMDE YDMELY+W K DISDE QKERV+ MIED EPFEGEALLDAKCFK
Sbjct:  341 FGKMLVIGSEPPFKVKGLWLFRGPEIPKFVMDEVYDMELYEWTKVDISDEAQKERVSAMIEDLEPFEGEALLDAKCFK 418
[Close]
BLAST of CN189999 vs. ExPASy Swiss-Prot
Match: EF1G2_ORYSJ (Elongation factor 1-gamma 2 OS=Oryza sativa subsp. japonica GN=Os02g0220500 PE=2 SV=2)

HSP 1 Score: 145.206 bits (365), Expect = 1.148e-34
Identity = 66/78 (84.62%), Postives = 72/78 (92.31%), Query Frame = -1 
Query:  211 FGKMLIIGNEPPYKVKGLWLFRGPEIPKFVMDECYDMELYDWKKADISDEEQKERVNQMIEDHEPFEGEALLDAKCFK 444
            FGKML+IG+EPP+KVKGLWLFRGPEIPKFVMDE YDMELY+W K DISDE QKERV+ MIED EPFEGE+LLDAKCFK
Sbjct:  341 FGKMLVIGSEPPFKVKGLWLFRGPEIPKFVMDEVYDMELYEWTKVDISDEAQKERVSAMIEDLEPFEGESLLDAKCFK 418
[Close]
BLAST of CN189999 vs. ExPASy Swiss-Prot
Match: EF1G2_ARATH (Probable elongation factor 1-gamma 2 OS=Arabidopsis thaliana GN=At1g57720 PE=2 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 3.341e-34
Identity = 66/78 (84.62%), Postives = 71/78 (91.03%), Query Frame = -1 
Query:  211 FGKMLIIGNEPPYKVKGLWLFRGPEIPKFVMDECYDMELYDWKKADISDEEQKERVNQMIEDHEPFEGEALLDAKCFK 444
            FGKMLI G+E P+KVKGLWLFRGPEIPKF+MDE YDMELY+W K DISDE QKERV+QMIED EPFEGEALLDAKCFK
Sbjct:  336 FGKMLICGSEGPFKVKGLWLFRGPEIPKFIMDEVYDMELYEWTKVDISDEAQKERVSQMIEDAEPFEGEALLDAKCFK 413
[Close]
BLAST of CN189999 vs. ExPASy Swiss-Prot
Match: EF1G1_ARATH (Probable elongation factor 1-gamma 1 OS=Arabidopsis thaliana GN=At1g09640 PE=2 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 3.341e-34
Identity = 66/78 (84.62%), Postives = 71/78 (91.03%), Query Frame = -1 
Query:  211 FGKMLIIGNEPPYKVKGLWLFRGPEIPKFVMDECYDMELYDWKKADISDEEQKERVNQMIEDHEPFEGEALLDAKCFK 444
            FGKMLI G+E P+KVKGLWLFRGPEIPKF+MDE YDMELY+W K DISDE QKERV+QMIED EPFEGEALLDAKCFK
Sbjct:  337 FGKMLICGSEGPFKVKGLWLFRGPEIPKFIMDEVYDMELYEWTKVDISDEAQKERVSQMIEDAEPFEGEALLDAKCFK 414
[Close]
BLAST of CN189999 vs. ExPASy Swiss-Prot
Match: EF1G3_ORYSJ (Elongation factor 1-gamma 3 OS=Oryza sativa subsp. japonica GN=Os06g0571400 PE=2 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 4.824e-33
Identity = 63/78 (80.77%), Postives = 69/78 (88.46%), Query Frame = -1 
Query:  211 FGKMLIIGNEPPYKVKGLWLFRGPEIPKFVMDECYDMELYDWKKADISDEEQKERVNQMIEDHEPFEGEALLDAKCFK 444
            FGKML+IG+ PP+KVKGLWLFRG +IPKFVMDE YDMELY+W K D+SDE QKERVN MIED EPFEGE LLDAKCFK
Sbjct:  339 FGKMLVIGSTPPFKVKGLWLFRGQDIPKFVMDEVYDMELYEWTKVDLSDEAQKERVNAMIEDQEPFEGEDLLDAKCFK 416
The following BLAST results are available for this feature:
BLAST of CN189999 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
EF1G_PRUAV5.154e-3583.33Elongation factor 1-gamma OS=Prunus avium PE=2 SV=... [more]
EF1G1_ORYSJ5.154e-3585.90Elongation factor 1-gamma 1 OS=Oryza sativa subsp.... [more]
EF1G2_ORYSJ1.148e-3484.62Elongation factor 1-gamma 2 OS=Oryza sativa subsp.... [more]
EF1G2_ARATH3.341e-3484.62Probable elongation factor 1-gamma 2 OS=Arabidopsi... [more]
EF1G1_ARATH3.341e-3484.62Probable elongation factor 1-gamma 1 OS=Arabidopsi... [more]
EF1G3_ORYSJ4.824e-3380.77Elongation factor 1-gamma 3 OS=Oryza sativa subsp.... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS06_0002M02_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0002M02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189999 ID=CN189999; Name=CN189999; organism=Citrus sinensis; type=EST; length=444bp
TTTTTTTTTTTTTTTTTCTTCAAGAACCATTGAAACTTGTATTAAAAAGA
TGTCCAAATCATCCTCAAAATTGCGACAAAATTATAAGTTAATACTATAA
CACAAAATACTAGACTTCGATCTTTCTGAATTCGAAACACAAACAAACTC
TACCAATAACCAAAGACAAACATGAACATCTTAAAACTAGAAAAAAGATT
AAGCTCATCACTTGAAGCACTTAGCATCCAAAAGAGCTTCACCCTCAAAA
GGCTCGTGATCCTCGATCATCTGGTTCACACGTTCCTTTTGCTCTTCGTC
TGAGATGTCAGCCTTCTTCCAGTCATACAATTCCATGTCATAGCACTCAT
CCATGACGAATTTAGGAATTTCTGGGCCACGGAAGAGCCACAACCCCTTG
ACTTTGTATGGAGGCTCGTTGCCGATAATTAGCATCTTTCCAAA
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