CN189929

Overview
NameCN189929
Unique NameCN189929
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length738
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig756 contig Csv1_Contig756:36..773. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CN189929 vs. ExPASy Swiss-Prot
Match: Y4844_ARATH (Uncharacterized protein At4g28440 OS=Arabidopsis thaliana GN=At4g28440 PE=1 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 5.333e-43
Identity = 88/132 (66.67%), Postives = 105/132 (79.55%), Query Frame = 3 
Query:   75 RKPVFTKVDQLRPGTSGHTLTVKVVSTKMVL---QKGRGDGTQVRQM---RIAECLVGDETGMIIFTARNDQVDLMKEGTTVILRNAKIDMFKGSMRLAVDKWGRVEVAEPANFTVKEDNNLSLIEYELVNV 452
            RKPVF KV+QL+PGT+GHTLTVKV+   +V+   +K R   +  R     RI ECL+GDETG I+FTARNDQVDLMK G TVILRN++IDMFKG+MRL VDKWGR+E    A+FTVKEDNNLSL+EYEL+NV
Sbjct:   18 RKPVFVKVEQLKPGTTGHTLTVKVIEANIVVPVTRKTRPASSLSRPSQPSRIVECLIGDETGCILFTARNDQVDLMKPGATVILRNSRIDMFKGTMRLGVDKWGRIEATGAASFTVKEDNNLSLVEYELINV 149
The following BLAST results are available for this feature:
BLAST of CN189929 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y4844_ARATH5.333e-4366.67Uncharacterized protein At4g28440 OS=Arabidopsis t... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS06_0002K07_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0002K07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189929 ID=CN189929; Name=CN189929; organism=Citrus sinensis; type=EST; length=738bp
GACGCAAAATCATTTCGTGTCTCCACTCAGGTTTTTTAGTTTTGCTGGAA
ATGGCAGAATCAAAATCAGGATTGAGGAAACCAGTTTTTACCAAGGTTGA
TCAGCTACGCCCGGGTACTAGTGGGCACACTCTCACAGTGAAGGTCGTGA
GTACGAAGATGGTATTGCAGAAGGGTCGTGGTGATGGAACACAAGTACGT
CAGATGCGAATTGCTGAATGCTTGGTTGGTGATGAGACAGGAATGATTAT
CTTTACTGCTAGAAATGATCAAGTGGACCTGATGAAAGAGGGTACTACTG
TGATTCTGCGCAATGCAAAAATTGACATGTTTAAAGGATCAATGAGACTT
GCTGTGGACAAGTGGGGCCGTGTTGAAGTTGCAGAGCCTGCCAATTTCAC
CGTGAAGGAAGATAACAACCTCTCTCTGATTGAATATGAGCTTGTGAATG
TTGTAGAAGAGTGAATTTCTGGACGGTGTTCACTTACTCACTGCAATGTG
ACCCAAGAATAAAAAGAAATCCAGCATATCATAGTACTGTCGTTTATGCG
GCATCTCCTGTCCAAAACTGTGGTGCCTTTAGGAAGAAGAAATCTGGAAG
CTATTACTACCCAAGATGCTTTCTACCGTTGTGGCAGATCCAGTAGAACC
TTTTGATTGGACCTCCAAACAGATGGTGATGGCTCTAAAGTTGATAAGTG
AAAGCAGCTGGCATTTTAAACTGTCTTTGGTTTGTTTG
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