CN189926

Overview
NameCN189926
Unique NameCN189926
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length611
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189926 vs. ExPASy Swiss-Prot
Match: THI4_CITSI (Thiazole biosynthetic enzyme, chloroplastic OS=Citrus sinensis GN=THI1 PE=2 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 2.718e-41
Identity = 85/86 (98.84%), Postives = 85/86 (98.84%), Query Frame = -3
Query:  352 NSAEDVIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGTYVGGVHPELILAAADSAETAD 609
            NSAED IVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGTYVGGVHPELILAAADSAETAD
Sbjct:  270 NSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGTYVGGVHPELILAAADSAETAD 355          
BLAST of CN189926 vs. ExPASy Swiss-Prot
Match: THI4_ALNGL (Thiazole biosynthetic enzyme, chloroplastic OS=Alnus glutinosa GN=THI4 PE=2 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 4.798e-38
Identity = 78/86 (90.70%), Postives = 82/86 (95.35%), Query Frame = -3
Query:  352 NSAEDVIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGTYVGGVHPELILAAADSAETAD 609
            N AED IVRLTRE+VPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALK+LG PNALDG+YVGG+HPELILAAADSAE AD
Sbjct:  266 NVAEDAIVRLTREIVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKALGLPNALDGSYVGGIHPELILAAADSAEIAD 351          
BLAST of CN189926 vs. ExPASy Swiss-Prot
Match: THI4_ARATH (Thiazole biosynthetic enzyme, chloroplastic OS=Arabidopsis thaliana GN=THI1 PE=1 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.445e-34
Identity = 73/86 (84.88%), Postives = 78/86 (90.70%), Query Frame = -3
Query:  352 NSAEDVIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGTYVGGVHPELILAAADSAETAD 609
            N+AED IVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKA  LALK+LG PNA+DGT VG + PEL+LAAADSAET D
Sbjct:  263 NTAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAGQLALKALGLPNAIDGTLVGNLSPELVLAAADSAETVD 348          
BLAST of CN189926 vs. ExPASy Swiss-Prot
Match: THI41_MAIZE (Thiazole biosynthetic enzyme 1-1, chloroplastic OS=Zea mays GN=THI1-1 PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 9.069e-29
Identity = 64/80 (80.00%), Postives = 71/80 (88.75%), Query Frame = -3
Query:  370 NSAEDVIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGTYVGGVHPELILAAAD 609
            N+AED IVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALK+LG+PNA+DGT    +  EL++A  D
Sbjct:  269 NTAEDEIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKALGRPNAVDGTMSPPLREELMIAYKD 348          
BLAST of CN189926 vs. ExPASy Swiss-Prot
Match: THI42_MAIZE (Thiazole biosynthetic enzyme 1-2, chloroplastic OS=Zea mays GN=THI1-2 PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.310e-27
Identity = 65/84 (77.38%), Postives = 73/84 (86.90%), Query Frame = -3
Query:  370 NSAEDVIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGTYVGGVHP----ELILAAAD 609
            N+AED IVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALK+LG+PNA+DGT +  V P    E ++A+ D
Sbjct:  266 NAAEDEIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKALGRPNAVDGT-IPEVSPALREEFVIASKD 348          
BLAST of CN189926 vs. ExPASy Swiss-Prot
Match: THI4_UROFA (Thiazole biosynthetic enzyme, mitochondrial OS=Uromyces fabae GN=THI2 PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.699e-14
Identity = 37/66 (56.06%), Postives = 51/66 (77.27%), Query Frame = -3
Query:  406 AEDVIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGTYVG 603
            AED I   TRE++PG+IV GME++E DG+ RMGPTFGAM++SG++AA +AL+SL +    +G  VG
Sbjct:  270 AEDHIANKTREILPGLIVGGMELSEFDGSARMGPTFGAMLLSGKRAAEVALQSLDRVKIEEGEVVG 335          
BLAST of CN189926 vs. ExPASy Swiss-Prot
Match: THI4_FUSSH (Thiazole biosynthetic enzyme, mitochondrial OS=Fusarium solani subsp. phaseoli GN=STI35 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.699e-14
Identity = 38/54 (70.37%), Postives = 46/54 (85.19%), Query Frame = -3
Query:  448 NSAEDVIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALK 609
            N AED IV+ TRE+VPG+IV GME++E+DGA RMGPTFGAM++SG KAA  ALK
Sbjct:  260 NVAEDAIVKGTREIVPGLIVGGMELSEVDGANRMGPTFGAMVLSGLKAAEEALK 313          
BLAST of CN189926 vs. ExPASy Swiss-Prot
Match: THI4_FUSOX (Thiazole biosynthetic enzyme, mitochondrial OS=Fusarium oxysporum GN=STI35 PE=2 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 6.310e-14
Identity = 38/54 (70.37%), Postives = 45/54 (83.33%), Query Frame = -3
Query:  448 NSAEDVIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALK 609
            N AED IV+ TRE+VPG+IV GME++E+DGA RMGPTFGAM +SG KAA  ALK
Sbjct:  256 NLAEDAIVKGTREIVPGLIVGGMELSEVDGANRMGPTFGAMALSGLKAAEEALK 309          
BLAST of CN189926 vs. ExPASy Swiss-Prot
Match: THI2_SCHPO (Thiazole biosynthetic enzyme, mitochondrial OS=Schizosaccharomyces pombe GN=thi2 PE=2 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 8.241e-14
Identity = 40/67 (59.70%), Postives = 48/67 (71.64%), Query Frame = -3
Query:  409 NSAEDVIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGTYV 609
            N AED+IV+ TREV PGMIV GME++E DGA RMGPTFG MM SG KAA  AL    +  A++  Y+
Sbjct:  262 NRAEDLIVKGTREVFPGMIVGGMELSEFDGANRMGPTFGGMMFSGIKAAQEALAIFDERKAVNEKYL 328          
BLAST of CN189926 vs. ExPASy Swiss-Prot
Match: THI4_ASPOR (Thiazole biosynthetic enzyme, mitochondrial OS=Aspergillus oryzae GN=thiA PE=3 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 5.342e-13
Identity = 37/54 (68.52%), Postives = 44/54 (81.48%), Query Frame = -3
Query:  448 NSAEDVIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALK 609
            NSAED IV+ TREV  G+I+ GME++EIDG  RMGPTFGAM++SG KAA  ALK
Sbjct:  263 NSAEDAIVKNTREVTKGLIIGGMELSEIDGFNRMGPTFGAMVLSGVKAAEEALK 316          
The following BLAST results are available for this feature:
BLAST of CN189926 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
THI4_CITSI2.718e-4198.84Thiazole biosynthetic enzyme, chloroplastic OS=Cit... [more]
THI4_ALNGL4.798e-3890.70Thiazole biosynthetic enzyme, chloroplastic OS=Aln... [more]
THI4_ARATH1.445e-3484.88Thiazole biosynthetic enzyme, chloroplastic OS=Ara... [more]
THI41_MAIZE9.069e-2980.00Thiazole biosynthetic enzyme 1-1, chloroplastic OS... [more]
THI42_MAIZE1.310e-2777.38Thiazole biosynthetic enzyme 1-2, chloroplastic OS... [more]
THI4_UROFA3.699e-1456.06Thiazole biosynthetic enzyme, mitochondrial OS=Uro... [more]
THI4_FUSSH3.699e-1470.37Thiazole biosynthetic enzyme, mitochondrial OS=Fus... [more]
THI4_FUSOX6.310e-1470.37Thiazole biosynthetic enzyme, mitochondrial OS=Fus... [more]
THI2_SCHPO8.241e-1459.70Thiazole biosynthetic enzyme, mitochondrial OS=Sch... [more]
THI4_ASPOR5.342e-1368.52Thiazole biosynthetic enzyme, mitochondrial OS=Asp... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0002K06_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0002K06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189926 ID=CN189926; Name=CN189926; organism=Citrus sinensis; type=EST; length=611bp
CAGCACTGTCCCATCGTTTGATGCCTCCAGTTATAAACATACAAAGCAAA
GAAAATGGAACAGCCCAAGGGCAGTCTTACACATAATACAGATAACAAGG
ACTAGATACGCAACTGCAAATTCACCCCCGAAAAACTCACAACGGTTTCT
TACAAGAGGAGAAAGAAATTAAAATTAAAGGTTGCATGATGGACCGGAAA
CAAACACTTTATTCACAAAACCTCACAACATCATCTCATTATTCGCATCA
ACCATCCATCACAACCACCTAAATACAACTACTTTTTTGCCAGAGTTTAT
TTGCATGCACACAGCTGATGAGTGATGATGCCTGTTATTATCAAATTAAC
CATCAGCAGTCTCAGCAGAATCAGCTGCAGCTAAGATCAGCTCAGGGTGA
ACACCTCCCACATATGTACCGTCTAATGCATTCGGCTGGCCCAGTGACTT
CAACGCCAAATGCGCAGCCTTCTGCCCCGATATCATCATTGCTCCAAATG
TTGGCCCCATTCTAGGAGCACCATCAATCTCGGCAACTTCCATGCCGGTA
ACTATCATACCAGGCACAACCTCCCTGGTCAGCCTCACAATAACATCTTC
TGCAGAGTTCA
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