CN189910

Overview
NameCN189910
Unique NameCN189910
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length451
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189910 vs. ExPASy Swiss-Prot
Match: SPC3B_ARATH (Signal peptidase complex subunit 3B OS=Arabidopsis thaliana GN=At5g27430 PE=2 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 3.052e-46
Identity = 88/103 (85.44%), Postives = 94/103 (91.26%), Query Frame = 2
Query:  143 MHSFGYRANALLTFAVTILALMCTIGSLSDNLNTPSPSAQIEILNINWFQKQPHGNDEVSLTLNITADLQSLFTWNTKQLFIFVAAEYDTPKNALNQVSLWDA 451
            MHSFGYRANALLTFAVTILA +C I S SDN +  +PSAQI+ILNINWFQKQPHGNDEVSLTLNITADLQSLFTWNTKQ+F FVAAEY+T KNALNQVSLWDA
Sbjct:    1 MHSFGYRANALLTFAVTILAFICAIASFSDNFSNQNPSAQIQILNINWFQKQPHGNDEVSLTLNITADLQSLFTWNTKQVFAFVAAEYETSKNALNQVSLWDA 103          
BLAST of CN189910 vs. ExPASy Swiss-Prot
Match: SPC3A_ARATH (Signal peptidase complex subunit 3A OS=Arabidopsis thaliana GN=At3g05230 PE=2 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 2.956e-41
Identity = 79/103 (76.70%), Postives = 92/103 (89.32%), Query Frame = 2
Query:  143 MHSFGYRANALLTFAVTILALMCTIGSLSDNLNTPSPSAQIEILNINWFQKQPHGNDEVSLTLNITADLQSLFTWNTKQLFIFVAAEYDTPKNALNQVSLWDA 451
            MH+FGYRANALLTFAVT LA +C I S SD  +  +PSA+I+ILNIN F+KQ HGNDEVSLTL+I+ADLQSLFTWNTKQ+F+FVAAEY+TPKN+LNQVSLWDA
Sbjct:    1 MHTFGYRANALLTFAVTALAFICAIASFSDKFSNQNPSAEIQILNINRFKKQSHGNDEVSLTLDISADLQSLFTWNTKQVFVFVAAEYETPKNSLNQVSLWDA 103          
BLAST of CN189910 vs. ExPASy Swiss-Prot
Match: SPCS3_CHICK (Signal peptidase complex subunit 3 OS=Gallus gallus GN=SPC22 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 3.080e-14
Identity = 41/101 (40.59%), Postives = 62/101 (61.39%), Query Frame = 2
Query:  161 RANALLTFAVTILALM---CTIGSLSDNLNTPSPSA--QIEILNINWFQKQPHGNDEVSLTLNITADLQSLFTWNTKQLFIFVAAEYDTPKNALNQVSLWD 448
            RAN+L  F+++++A +   C I +     + P   A  ++ + N+  F      +D   +T +ITADLQS+F WN KQLF++++AEY T  NALNQV LWD
Sbjct:    7 RANSLFAFSLSVMAALTFGCFITTAFKERSVPVSIAVSRVTLRNVEDFTGPRERSDLAFVTFDITADLQSIFDWNVKQLFLYLSAEYSTKNNALNQVVLWD 107          
BLAST of CN189910 vs. ExPASy Swiss-Prot
Match: SPCS3_HUMAN (Signal peptidase complex subunit 3 OS=Homo sapiens GN=SPCS3 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 5.809e-13
Identity = 39/101 (38.61%), Postives = 63/101 (62.38%), Query Frame = 2
Query:  161 RANALLTFAVTILALM---CTIGSLSDNLNTPSPS--AQIEILNINWFQKQPHGNDEVSLTLNITADLQSLFTWNTKQLFIFVAAEYDTPKNALNQVSLWD 448
            RAN+L  F+++++A +   C I +   + + P     ++I + N+  F      +D   +T +ITADL+++F WN KQLF++++AEY T  NALNQV LWD
Sbjct:    7 RANSLFAFSLSVMAALTFGCFITTAFKDRSVPVRLHVSRIMLKNVEDFTGPRERSDLGFITFDITADLENIFDWNVKQLFLYLSAEYSTKNNALNQVVLWD 107          
BLAST of CN189910 vs. ExPASy Swiss-Prot
Match: SPCS3_CANFA (Signal peptidase complex subunit 3 OS=Canis familiaris GN=SPCS3 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 5.809e-13
Identity = 39/101 (38.61%), Postives = 63/101 (62.38%), Query Frame = 2
Query:  161 RANALLTFAVTILALM---CTIGSLSDNLNTPSPS--AQIEILNINWFQKQPHGNDEVSLTLNITADLQSLFTWNTKQLFIFVAAEYDTPKNALNQVSLWD 448
            RAN+L  F+++++A +   C I +   + + P     ++I + N+  F      +D   +T +ITADL+++F WN KQLF++++AEY T  NALNQV LWD
Sbjct:    7 RANSLFAFSLSVMAALTFGCFITTAFKDRSVPVRLHVSRIMLKNVEDFTGPRERSDLGFITFDITADLENIFDWNVKQLFLYLSAEYSTKNNALNQVVLWD 107          
BLAST of CN189910 vs. ExPASy Swiss-Prot
Match: SPCS3_BOVIN (Signal peptidase complex subunit 3 OS=Bos taurus GN=SPCS3 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 5.809e-13
Identity = 39/101 (38.61%), Postives = 63/101 (62.38%), Query Frame = 2
Query:  161 RANALLTFAVTILALM---CTIGSLSDNLNTPSPS--AQIEILNINWFQKQPHGNDEVSLTLNITADLQSLFTWNTKQLFIFVAAEYDTPKNALNQVSLWD 448
            RAN+L  F+++++A +   C I +   + + P     ++I + N+  F      +D   +T +ITADL+++F WN KQLF++++AEY T  NALNQV LWD
Sbjct:    7 RANSLFAFSLSVMAALTFGCFITTAFKDRSVPVRLHVSRIMLKNVEDFTGPRERSDLGFITFDITADLENIFDWNVKQLFLYLSAEYSTKNNALNQVVLWD 107          
BLAST of CN189910 vs. ExPASy Swiss-Prot
Match: SPCS3_CAEBR (Probable signal peptidase complex subunit 3 OS=Caenorhabditis briggsae GN=CBG22979 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.869e-11
Identity = 36/107 (33.64%), Postives = 58/107 (54.21%), Query Frame = 2
Query:  143 MHSFGYRANALLTFAVTILALMCTIGSLSDNLNTPSPSAQIEILNINWFQKQPHGNDE-----VSLTLNITADLQSLFTWNTKQLFIFVAAEYDTPKNALNQVSLWD 448
            MH+   RAN+LL F + ++A +     LS      + S  +E+ +I     + +  D+      +L  N+  D   LF WN KQLF+++ AEY + +NA+NQV +WD
Sbjct:    1 MHNLLSRANSLLAFTLWVMAAVTAACFLSTVFLDYTVSNHLEVNDIKIRNVRDYATDDKQADLATLAFNLKVDFSRLFNWNVKQLFVYLVAEYKSAENAVNQVVIWD 107          
BLAST of CN189910 vs. ExPASy Swiss-Prot
Match: SPCS3_DICDI (Signal peptidase complex subunit 3 OS=Dictyostelium discoideum GN=spcs3 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 3.188e-11
Identity = 38/103 (36.89%), Postives = 59/103 (57.28%), Query Frame = 2
Query:  143 MHSFGYRANALLTFAVTILALMCTIGSLSDNLNTPSPSAQIEILNINWFQKQPHGNDEVS-LTLNITADLQSLFTWNTKQLFIFVAAEYDTPKNALNQVSLWD 448
            MHS   RAN ++ F   +L  +  +  LS    +      I++  I+ F  Q   N E S +++++ A+L+ LF WNTK LF++V AEY T +N L+QV +WD
Sbjct:    1 MHSLSQRANTIVCFGGIVLVGVLLLNVLSRAFFSDHVDVDIKLNEIHRFNTQR--NFEYSFISIDLDANLEPLFNWNTKMLFLYVTAEYRTKQNVLSQVVVWD 101          
BLAST of CN189910 vs. ExPASy Swiss-Prot
Match: SPCS3_MOUSE (Signal peptidase complex subunit 3 OS=Mus musculus GN=Spcs3 PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 5.437e-11
Identity = 37/107 (34.58%), Postives = 62/107 (57.94%), Query Frame = 2
Query:  143 MHSFGYRANALLTFAVTILALM---CTIGSLSDNLNTPSPS--AQIEILNINWFQKQPHGNDEVSLTLNITADLQSLFTWNTKQLFIFVAAEYDTPKNALNQVSLWD 448
            M+S   RAN+L  F ++++A +   C + +   + + P     ++I +  +  F      +D   +T +I+ADL+  F WN KQLF++++AEY T  NA+NQV LWD
Sbjct:    1 MNSLLSRANSLFAFTLSVMAALTLGCILTTAFKDRSAPVRLHVSRILLKKVEDFTGPRKKSDLGFITFHISADLEKTFDWNVKQLFLYLSAEYSTKSNAVNQVVLWD 107          
BLAST of CN189910 vs. ExPASy Swiss-Prot
Match: SPCS3_CAEEL (Probable signal peptidase complex subunit 3 OS=Caenorhabditis elegans GN=K12H4.4 PE=1 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 5.437e-11
Identity = 34/107 (31.78%), Postives = 57/107 (53.27%), Query Frame = 2
Query:  143 MHSFGYRANALLTFAVTILALM---CTIGSLSDNLNTPSPSA--QIEILNINWFQKQPHGNDEVSLTLNITADLQSLFTWNTKQLFIFVAAEYDTPKNALNQVSLWD 448
            MH+   RANALL F + ++A +   C + ++  +   P+      +++ N+  +       D  +L  N+  D   +F WN KQLF+++ AEY +  N +NQV LWD
Sbjct:    1 MHNLLSRANALLAFTLWVMAAVTAACFLSTVFLDYTVPTKLTVNDVKVRNVVDYATDEQQADLATLNFNLKVDFSKIFNWNVKQLFVYLVAEYKSKVNEVNQVVLWD 107          
The following BLAST results are available for this feature:
BLAST of CN189910 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
SPC3B_ARATH3.052e-4685.44Signal peptidase complex subunit 3B OS=Arabidopsis... [more]
SPC3A_ARATH2.956e-4176.70Signal peptidase complex subunit 3A OS=Arabidopsis... [more]
SPCS3_CHICK3.080e-1440.59Signal peptidase complex subunit 3 OS=Gallus gallu... [more]
SPCS3_HUMAN5.809e-1338.61Signal peptidase complex subunit 3 OS=Homo sapiens... [more]
SPCS3_CANFA5.809e-1338.61Signal peptidase complex subunit 3 OS=Canis famili... [more]
SPCS3_BOVIN5.809e-1338.61Signal peptidase complex subunit 3 OS=Bos taurus G... [more]
SPCS3_CAEBR1.869e-1133.64Probable signal peptidase complex subunit 3 OS=Cae... [more]
SPCS3_DICDI3.188e-1136.89Signal peptidase complex subunit 3 OS=Dictyosteliu... [more]
SPCS3_MOUSE5.437e-1134.58Signal peptidase complex subunit 3 OS=Mus musculus... [more]
SPCS3_CAEEL5.437e-1131.78Probable signal peptidase complex subunit 3 OS=Cae... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS06_0002J18_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0002J18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189910 ID=CN189910; Name=CN189910; organism=Citrus sinensis; type=EST; length=451bp
CTTTTAAGGCGCGCCACGCTGCCACCGGTCGTAATTCTCGGCTGTCAATC
GGGTCTTGTCGGTGGTCACTTTCTCGCATCACAGTTGCAGTCGACCTTCA
CTCTCGTCTTCTTCGGGTTATATTTAACGGAAAAAATAAAAAATGCATTC
GTTTGGGTACAGAGCCAATGCTCTGCTAACGTTCGCCGTGACAATTCTGG
CGCTAATGTGCACCATTGGTTCTCTTTCCGATAACCTCAACACTCCTTCT
CCTTCTGCTCAAATTGAGATATTGAATATCAATTGGTTTCAGAAGCAGCC
ACATGGAAACGACGAGGTCAGCCTGACATTGAATATAACAGCTGATTTGC
AATCACTATTTACATGGAACACAAAACAGCTTTTCATTTTTGTGGCAGCT
GAGTATGATACCCCAAAGAATGCCTTAAACCAAGTGTCTCTTTGGGATGC
T
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