CN189907

Overview
NameCN189907
Unique NameCN189907
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length799
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189907 vs. ExPASy Swiss-Prot
Match: AAH_ARATH (Allantoate deiminase, chloroplastic OS=Arabidopsis thaliana GN=AAH PE=2 SV=2)

HSP 1 Score: 295.819 bits (756), Expect = 1.822e-79
Identity = 146/205 (71.22%), Postives = 172/205 (83.90%), Query Frame = -2
Query:  184 VPMSMRQDPMTAAAELIVLLERLCKHPKDFLSYDGRXXXXXXXXXXXXLVCTVGEISSWPSASNVIPGEVTFTVDLRAIDDAGRETVLYELSNQLYQICEKRSVSCIVERKHDANAVMCDADLSSQLKSASYAALKRMTGATQHEIPVIMSGAGHDAMAMSHLTKVGMLFVRCRGGISHSPAEHVLDDDVWAAGLAVLAFLETHV 798
            VPMSMRQDPMT AAELIVLLE +CK+PKD+LS + +            LVCTVGEIS+WPSASNVIPG+VTFTVDLR IDD GR+ +L++LS ++YQIC+KRS+ C +ERKHDA+AVM D  LS QLKSA+ +ALK+MTG  Q E+PV+MSGAGHDAMAM+HLTKVGMLFVRCRGGISHSPAEHVLDDDV AAGLA+L FLE+ +
Sbjct:  321 VPMSMRQDPMTGAAELIVLLESVCKNPKDYLSCNVQCNEDTVESLANSLVCTVGEISTWPSASNVIPGQVTFTVDLRTIDDVGRKAILHDLSTRMYQICDKRSLLCSIERKHDADAVMSDPQLSLQLKSAAQSALKKMTGEVQDEVPVLMSGAGHDAMAMAHLTKVGMLFVRCRGGISHSPAEHVLDDDVGAAGLAILEFLESQM 525          
BLAST of CN189907 vs. ExPASy Swiss-Prot
Match: HYUC_PSESN (Hydantoin utilization protein C OS=Pseudomonas sp. (strain NS671) GN=hyuC PE=1 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.160e-25
Identity = 66/190 (34.74%), Postives = 104/190 (54.74%), Query Frame = -2
Query:  229 VPMSMRQDPMTAAAELIVLLERLCKHPKDFLSYDGRXXXXXXXXXXXXLVCTVGEISSWPSASNVIPGEVTFTVDLRAIDDAGRETVLYELSNQLYQICEKRSVSCIVERKHDANAVMCDADLSSQLKSASYAALKRMTGATQHEIPVIMSGAGHDAMAMSHLTKVGMLFVRCRGGISHSPAEHVLDDDV 798
            VPMS+R+DP+  AAE+I  +E LC +  +                    V TVG I+++P  SN+IP  V FT+D+R I+   R  ++ ++  ++  +   R +   +E+   A  V C  +L + LK +            + + P+I+SGAGHDAM ++ +T++GM+FVRCR GISHSP E    DD+
Sbjct:  235 VPMSLRKDPLVGAAEVIKEVETLCMNDPN-----------------APTVGTVGRIAAFPGGSNIIPESVEFTLDIRDIELERRNKIIEKIEEKIKLVSNTRGLEYQIEKNMAAVPVKCSENLINSLKQSCKEL--------EIDAPIIVSGAGHDAMFLAEITEIGMVFVRCRNGISHSPKEWAEIDDI 399          
BLAST of CN189907 vs. ExPASy Swiss-Prot
Match: AMAB2_BACST (N-carbamoyl-L-amino acid hydrolase OS=Bacillus stearothermophilus GN=amaB PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.119e-19
Identity = 65/197 (32.99%), Postives = 104/197 (52.79%), Query Frame = -2
Query:  205 PMSMRQDPMTAAAELIVLLERLCKHPKDFLSYDGRXXXXXXXXXXXXLVCTVGEISSWPSASNVIPGEVTFTVDLRAIDDAGRETVLYELSNQLYQICEKRSVSCIVERKHDANAVMCDADLSSQLKSASYAALKRMTGATQHEIPVIMSGAGHDAMAMSHLTKVGMLFVRCRGGISHSPAEHVLDDDVWAAGLAVL 795
            PMS+R+DPM AAA++I+++E   +                        V TVG++  +P   NVIP  V F +DLR +    R+ V   ++ +   I ++R+V    ER  +   V+C    S ++K A+ AA +++ G     +P   SGA HD++ ++ +  +GM+FVR + G+SHSPAE    +D  AAG  VL
Sbjct:  230 PMSLRRDPMAAAAQIIIVIEEEARRT-------------------GTTVGTVGQLHVYPGGINVIPERVEFVLDLRDLKAEVRDQVWKAIAVRAETIAKERNVRVTTERLQEMPPVLC----SDEVKRAAEAACQKL-GYPSFWLP---SGAAHDSVQLAPICPIGMIFVRSQDGVSHSPAEWSTKEDC-AAGAEVL 398          
BLAST of CN189907 vs. ExPASy Swiss-Prot
Match: AMAB1_BACST (N-carbamoyl-L-amino acid hydrolase OS=Bacillus stearothermophilus GN=amaB PE=3 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 3.996e-18
Identity = 64/197 (32.49%), Postives = 100/197 (50.76%), Query Frame = -2
Query:  205 PMSMRQDPMTAAAELIVLLERLCKHPKDFLSYDGRXXXXXXXXXXXXLVCTVGEISSWPSASNVIPGEVTFTVDLRAIDDAGRETVLYELSNQLYQICEKRSVSCIVERKHDANAVMCDADLSSQLKSASYAALKRMTGATQHEIPVIMSGAGHDAMAMSHLTKVGMLFVRCRGGISHSPAEHVLDDDVWAAGLAVL 795
            PMS+R+DPM AAA++I+++E   +                        V TVG++  +P   NVIP  V F +DLR +    R+ V   ++ +   I ++R+V    ER  +   V+C    S  +K A+  A K++ G     +P   SGA HD + ++ +  +GM+FVR + G+SHSPAE    +D  A G  VL
Sbjct:  230 PMSLRRDPMAAAAQIIIVIEEEARRT-------------------GTTVGTVGQLHVYPGGINVIPERVEFVLDLRDLKAEVRDQVWKAIAVRAETIAKERNVRLTTERLQEMAPVLC----SEVVKQAAERACKQL-GYPPFWLP---SGAAHDGVQLAPICPIGMIFVRSQDGVSHSPAEWSTKEDC-AVGAEVL 398          
BLAST of CN189907 vs. ExPASy Swiss-Prot
Match: Y588_HAEIN (Uncharacterized hydrolase HI0588 OS=Haemophilus influenzae GN=HI0588 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.471e-12
Identity = 45/149 (30.20%), Postives = 76/149 (51.01%), Query Frame = -2
Query:  205 VCTVGEISSWPSASNVIPGEVTFTVDLRAIDDAGRETVLYELSNQLYQICEKRSVSCIVERKHDANAVMCDADLSSQLKSASYAALKRMTGATQHEIPVIMSGAGHDAMAMSHLTKVGMLFVRCRGGISHSPAEHVLDDDVWAAGLAVL 651
            V TVG I++ P   NV+PG     VD+R      R++V   L  ++ ++ EKR +   ++     N ++   ++ +Q+   ++        +  +   ++ SGAGHDAM M+ L   GM+F+    GISH+P E     D+  AG+ VL
Sbjct:  261 VATVGNITAKPGVMNVVPGYCELLVDIRGTHVQARDSVFELLQEEISKVSEKRGLLIELQLISKDNPIILPENMVNQIAETAH--------SLGYSYEIMPSGAGHDAMHMATLCPTGMIFIPSHLGISHNPLEFTDWKDI-EAGIKVL 400          
BLAST of CN189907 vs. ExPASy Swiss-Prot
Match: ALLC_ECOLI (Allantoate amidohydrolase OS=Escherichia coli (strain K12) GN=allC PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 7.299e-12
Identity = 46/152 (30.26%), Postives = 71/152 (46.71%), Query Frame = -2
Query:  196 VCTVGEISSWPSASNVIPGEVTFTVDLRAIDDAGRETVLYELSNQLYQICEKRSVSCIVERKHDANAVMCDADLSSQLKSASYAALKRMTGATQHEIPVIMSGAGHDAMAMSHLTKVGMLFVRCRGGISHSPAEHVLDDDVWAAGLAVLAFL 651
            V T G++   P+  NV+PG+ TFT+D R  D A       +L N +  IC++  +   ++   D   V  + +L         A L  +    +    V+ SGAGHDA   +      M+F+    GISH+PAE     D+ A G+  LA +
Sbjct:  261 VLTFGKVEPRPNTVNVVPGKTTFTIDCRHTDAAVLRDFTQQLENDMRAICDEMDIGIDIDLWMDEEPVPMNKEL--------VATLTELCEREKLNYRVMHSGAGHDAQIFAPRVPTCMIFIPSINGISHNPAERTNITDL-AEGVKTLALM 403          
The following BLAST results are available for this feature:
BLAST of CN189907 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
AAH_ARATH1.822e-7971.22Allantoate deiminase, chloroplastic OS=Arabidopsis... [more]
HYUC_PSESN1.160e-2534.74Hydantoin utilization protein C OS=Pseudomonas sp.... [more]
AMAB2_BACST2.119e-1932.99N-carbamoyl-L-amino acid hydrolase OS=Bacillus ste... [more]
AMAB1_BACST3.996e-1832.49N-carbamoyl-L-amino acid hydrolase OS=Bacillus ste... [more]
Y588_HAEIN1.471e-1230.20Uncharacterized hydrolase HI0588 OS=Haemophilus in... [more]
ALLC_ECOLI7.299e-1230.26Allantoate amidohydrolase OS=Escherichia coli (str... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS06_0002J17_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0002J17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189907 ID=CN189907; Name=CN189907; organism=Citrus sinensis; type=EST; length=799bp
TTTTTTTCCACATCAAATACTCTTATCTTATCTTGAGTGTATCTGCATAA
ACAACTACCAAAAACAAATAATGATAATACATACATATATGCAATGGGTT
TTCCAAATTGAGGCATTGCCTAATTAGACTTATTTTTTTAGAAGAAAATA
TTTACATTAATGCTGCAGAATGTTTACAGTTCACACATGGGTTTCAAGAA
ATGCCAAAACTGCTAAACCAGCAGCCCATACATCATCATCCAAAACATGC
TCTGCAGGGGAATGACTTATTCCTCCCCGACATCGCACAAAGAGCATCCC
GACCTTGGTTAGATGAGACATGGCCATTGCATCATGTCCGGCACCACTCA
TTATTACTGGAATTTCATGTTGAGTCGCACCTGTCATTCTCTTGAGTGCA
GCGTAGGATGCAGACTTCAGCTGTGAACTTAAATCAGCATCGCACATCAC
TGCATTTGCATCATGCTTTCGTTCAACAATGCAAGAAACGGAACGTTTTT
CACATATTTGATACAATTGATTAGATAGTTCGTAAAGAACTGTCTCACGG
CCTGCATCATCAATTGCTCGTAAATCCACAGTGAATGTAACCTCTCCTGG
GATGACATTGCTAGCGCTTGGCCAGCTTGAAATCTCTCCAACAGTACAGA
CAAGAGAACTAGATAGTGATTCCAATGTGGAGCCGTTGGAACGACCATCA
TAAGACAGAAAATCTTTAGGGTGTTTACAGAGTCTTTCCAGAAGTACAAT
TAATTCAGCAGCAGCAGTCATAGGGTCCTGACGCATTGACATTGGAACT
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