CN189905

Overview
NameCN189905
Unique NameCN189905
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length296
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189905 vs. ExPASy Swiss-Prot
Match: EF1B_ORYSJ (Elongation factor 1-beta OS=Oryza sativa subsp. japonica GN=Os07g0662500 PE=1 SV=3)

HSP 1 Score: 100.138 bits (248), Expect = 3.623e-21
Identity = 48/54 (88.89%), Postives = 52/54 (96.30%), Query Frame = -2
Query:  134 SKLVPVGYGIKKLQIMITIVDDLVSVDSLIEDHLTAEPCNEYIQSCDIVAFNKI 295
            SKLVPVGYGIKKLQIM+TIVDDLVSVDSLIE+HLT EP NE++QSCDIVAFNKI
Sbjct:  171 SKLVPVGYGIKKLQIMLTIVDDLVSVDSLIEEHLTEEPINEFVQSCDIVAFNKI 224          
BLAST of CN189905 vs. ExPASy Swiss-Prot
Match: EF1D_PIMBR (Elongation factor 1-delta OS=Pimpinella brachycarpa PE=2 SV=3)

HSP 1 Score: 98.5969 bits (244), Expect = 1.054e-20
Identity = 48/54 (88.89%), Postives = 51/54 (94.44%), Query Frame = -2
Query:  134 SKLVPVGYGIKKLQIMITIVDDLVSVDSLIEDHLTAEPCNEYIQSCDIVAFNKI 295
            SKLV VGYGIKKLQIM+TIVDDLVSVD L+ED+LTAEP NEYIQSCDIVAFNKI
Sbjct:  173 SKLVAVGYGIKKLQIMLTIVDDLVSVDDLVEDYLTAEPANEYIQSCDIVAFNKI 226          
BLAST of CN189905 vs. ExPASy Swiss-Prot
Match: EF1D_BETVU (Elongation factor 1-delta OS=Beta vulgaris PE=2 SV=3)

HSP 1 Score: 97.4413 bits (241), Expect = 2.348e-20
Identity = 47/54 (87.04%), Postives = 51/54 (94.44%), Query Frame = -2
Query:  134 SKLVPVGYGIKKLQIMITIVDDLVSVDSLIEDHLTAEPCNEYIQSCDIVAFNKI 295
            SKLVPVGYGIKKL IM+TIVDDLVSVD+LIED+LT EP NEY+QSCDIVAFNKI
Sbjct:  178 SKLVPVGYGIKKLTIMMTIVDDLVSVDNLIEDYLTVEPINEYVQSCDIVAFNKI 231          
BLAST of CN189905 vs. ExPASy Swiss-Prot
Match: EF1D1_ORYSJ (Elongation factor 1-delta 1 OS=Oryza sativa subsp. japonica GN=Os07g0614500 PE=2 SV=3)

HSP 1 Score: 97.4413 bits (241), Expect = 2.348e-20
Identity = 48/54 (88.89%), Postives = 50/54 (92.59%), Query Frame = -2
Query:  134 SKLVPVGYGIKKLQIMITIVDDLVSVDSLIEDHLTAEPCNEYIQSCDIVAFNKI 295
            SKLVPVGYGIKKLQIM+TIVDDLVSVDSLIED+   EP NEYIQSCDIVAFNKI
Sbjct:  176 SKLVPVGYGIKKLQIMMTIVDDLVSVDSLIEDYFYTEPANEYIQSCDIVAFNKI 229          
BLAST of CN189905 vs. ExPASy Swiss-Prot
Match: EF1D2_ORYSJ (Elongation factor 1-delta 2 OS=Oryza sativa subsp. japonica GN=Os03g0406200 PE=2 SV=3)

HSP 1 Score: 95.9005 bits (237), Expect = 6.832e-20
Identity = 47/54 (87.04%), Postives = 50/54 (92.59%), Query Frame = -2
Query:  134 SKLVPVGYGIKKLQIMITIVDDLVSVDSLIEDHLTAEPCNEYIQSCDIVAFNKI 295
            SKLVPVGYGIKKLQIM+TIVDDLVSVDSLIED+   EP NE+IQSCDIVAFNKI
Sbjct:  173 SKLVPVGYGIKKLQIMMTIVDDLVSVDSLIEDYFYTEPANEFIQSCDIVAFNKI 226          
BLAST of CN189905 vs. ExPASy Swiss-Prot
Match: EF1B1_ARATH (Elongation factor 1-beta 1 OS=Arabidopsis thaliana GN=At5g12110 PE=2 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 6.832e-20
Identity = 48/54 (88.89%), Postives = 51/54 (94.44%), Query Frame = -2
Query:  134 SKLVPVGYGIKKLQIMITIVDDLVSVDSLIEDHLTAEPCNEYIQSCDIVAFNKI 295
            SKLVPVGYGIKKL IM+TIVDDLVSVD+LIEDHLT+EP NEYIQS DIVAFNKI
Sbjct:  175 SKLVPVGYGIKKLTIMMTIVDDLVSVDNLIEDHLTSEPNNEYIQSVDIVAFNKI 228          
BLAST of CN189905 vs. ExPASy Swiss-Prot
Match: EF1D1_ARATH (Elongation factor 1-delta 1 OS=Arabidopsis thaliana GN=At1g30230 PE=2 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 1.988e-19
Identity = 44/54 (81.48%), Postives = 50/54 (92.59%), Query Frame = -2
Query:  134 SKLVPVGYGIKKLQIMITIVDDLVSVDSLIEDHLTAEPCNEYIQSCDIVAFNKI 295
            SKLVPVGYGIKKLQI+ TIVDDLVS+D++IE+ LT EP NEY+QSCDIVAFNKI
Sbjct:  178 SKLVPVGYGIKKLQILCTIVDDLVSIDTMIEEQLTVEPINEYVQSCDIVAFNKI 231          
BLAST of CN189905 vs. ExPASy Swiss-Prot
Match: EF1D2_ARATH (Elongation factor 1-delta 2 OS=Arabidopsis thaliana GN=At2g18110 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 3.391e-19
Identity = 44/54 (81.48%), Postives = 49/54 (90.74%), Query Frame = -2
Query:  134 SKLVPVGYGIKKLQIMITIVDDLVSVDSLIEDHLTAEPCNEYIQSCDIVAFNKI 295
            SKLVPVGYGIKKL IM TIVDDLVS+D++IE+ LT EP NEY+QSCDIVAFNKI
Sbjct:  178 SKLVPVGYGIKKLHIMCTIVDDLVSIDTMIEEQLTVEPINEYVQSCDIVAFNKI 231          
BLAST of CN189905 vs. ExPASy Swiss-Prot
Match: EF1B2_ARATH (Elongation factor 1-beta 2 OS=Arabidopsis thaliana GN=At5g19510 PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 3.391e-19
Identity = 47/54 (87.04%), Postives = 49/54 (90.74%), Query Frame = -2
Query:  134 SKLVPVGYGIKKLQIMITIVDDLVSVDSLIEDHLTAEPCNEYIQSCDIVAFNKI 295
            SKLVPVGYGIKKL IM TIVDDLVS D+LIED LT+EP NEYIQSCDIVAFNKI
Sbjct:  171 SKLVPVGYGIKKLTIMFTIVDDLVSPDNLIEDFLTSEPNNEYIQSCDIVAFNKI 224          
BLAST of CN189905 vs. ExPASy Swiss-Prot
Match: EF1B_WHEAT (Elongation factor 1-beta OS=Triticum aestivum PE=1 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 2.514e-14
Identity = 39/54 (72.22%), Postives = 44/54 (81.48%), Query Frame = -2
Query:  134 SKLVPVGYGIKKLQIMITIVDDLVSVDSLIEDHLTAEPCNEYIQSCDIVAFNKI 295
            SKL+PVGYGIKKLQIM+TI+DDL S    IE+ L   P NEY+QSCDIVAFNKI
Sbjct:  165 SKLMPVGYGIKKLQIMLTIIDDLASTP--IEEVLCEAPINEYVQSCDIVAFNKI 216          
The following BLAST results are available for this feature:
BLAST of CN189905 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
EF1B_ORYSJ3.623e-2188.89Elongation factor 1-beta OS=Oryza sativa subsp. ja... [more]
EF1D_PIMBR1.054e-2088.89Elongation factor 1-delta OS=Pimpinella brachycarp... [more]
EF1D_BETVU2.348e-2087.04Elongation factor 1-delta OS=Beta vulgaris PE=2 SV... [more]
EF1D1_ORYSJ2.348e-2088.89Elongation factor 1-delta 1 OS=Oryza sativa subsp.... [more]
EF1D2_ORYSJ6.832e-2087.04Elongation factor 1-delta 2 OS=Oryza sativa subsp.... [more]
EF1B1_ARATH6.832e-2088.89Elongation factor 1-beta 1 OS=Arabidopsis thaliana... [more]
EF1D1_ARATH1.988e-1981.48Elongation factor 1-delta 1 OS=Arabidopsis thalian... [more]
EF1D2_ARATH3.391e-1981.48Elongation factor 1-delta 2 OS=Arabidopsis thalian... [more]
EF1B2_ARATH3.391e-1987.04Elongation factor 1-beta 2 OS=Arabidopsis thaliana... [more]
EF1B_WHEAT2.514e-1472.22Elongation factor 1-beta OS=Triticum aestivum PE=1... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS06_0002J16_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0002J16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189905 ID=CN189905; Name=CN189905; organism=Citrus sinensis; type=EST; length=296bp
TTTCTTCTCAATTTAGCACGGAAAATGCAGGCCAAGCAACCCCTTTAAAA
AGCAGAACACAATTAAAACGACAAAAACTAAATTGCAGCCAAAAATGGCT
GCACTATAAGGCAAAACAATGAGAGGATTCTTAAATTTTATTGAAGGCGA
CGATGTCGCAGCTCTGAATATACTCATTGCAGGGCTCAGCTGTGAGGTGG
TCCTCTATCAGTGAATCCACAGAAACAAGATCGTCAACGATTGTAATCAT
GATTTGCAGCTTCTTAATCCCATAACCGACTGGGACCAATTTTGAT
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